Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0218_(-)_260924_262252
DateTue Jul 23 14:50:27 BST 2019
Unique Job IDf9de983621f0c078
SequenceMSDPARGAEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.106 Y:39.131 Z:44.727
Model (left) based on template d1xdya_
Top template information
Fold:Oxidoreductase molybdopterin-binding domain
Superfamily:Oxidoreductase molybdopterin-binding domain
Family:Oxidoreductase molybdopterin-binding domain
Confidence and coverage
Confidence:100.0% Coverage: 33%
148 residues ( 33% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
347 residues ( 79%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1xdya_



100.0 28
Fold:Oxidoreductase molybdopterin-binding domain
Superfamily:Oxidoreductase molybdopterin-binding domain
Family:Oxidoreductase molybdopterin-binding domain
2c1xdyC_



100.0 28
PDB header:oxidoreductase
Chain: C: PDB Molecule:bacterial sulfite oxidase;
PDBTitle: structural and biochemical identification of a novel2 bacterial oxidoreductase, w-containing cofactor
3c2xtsC_



100.0 25
PDB header:oxidoreductase/electron transport
Chain: C: PDB Molecule:sulfite dehydrogenase;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
4c1soxB_



100.0 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite oxidase;
PDBTitle: sulfite oxidase from chicken liver
5c2bpbA_



100.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit a;
PDBTitle: sulfite dehydrogenase from starkeya novella
6c2bihA_



100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrate reductase [nadph];
PDBTitle: crystal structure of the molybdenum-containing nitrate2 reducing fragment of pichia angusta assimilatory nitrate3 reductase
7c1ogpD_



100.0 28
PDB header:oxidoreductase
Chain: D: PDB Molecule:sulfite oxidase;
PDBTitle: the crystal structure of plant sulfite oxidase provides2 insight into sulfite oxidation in plants and animals
8d1ogpa2



100.0 27
Fold:Oxidoreductase molybdopterin-binding domain
Superfamily:Oxidoreductase molybdopterin-binding domain
Family:Oxidoreductase molybdopterin-binding domain
9c2a9dB_



100.0 26
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite oxidase;
PDBTitle: crystal structure of recombinant chicken sulfite oxidase with arg at2 residue 161
10c2biiA_



100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrate reductase [nadph];
PDBTitle: crystal structure of nitrate-reducing fragment of2 assimilatory nitrate reductase from pichia angusta
11d2a9da2



100.0 27
Fold:Oxidoreductase molybdopterin-binding domain
Superfamily:Oxidoreductase molybdopterin-binding domain
Family:Oxidoreductase molybdopterin-binding domain
12c4pw3B_



100.0 26
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative sulfite oxidase;
PDBTitle: crystal structure of the sulfite dehydrogenase sort from sinorhizobium2 meliloti
13d1kqfc_



98.4 15
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Formate dehydrogenase N, cytochrome (gamma) subunit
14c4gd3A_



97.9 21
PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:ni/fe-hydrogenase 1 b-type cytochrome subunit;
PDBTitle: structure of e. coli hydrogenase-1 in complex with cytochrome b
15c4gd3B_



97.9 21
PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:ni/fe-hydrogenase 1 b-type cytochrome subunit;
PDBTitle: structure of e. coli hydrogenase-1 in complex with cytochrome b
16c5oc0A_



96.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b561;
PDBTitle: structure of e. coli superoxide oxidase
17c6hwhb_



95.0 20
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
18c2qjkM_



94.5 20
PDB header:electron transport
Chain: M: PDB Molecule:cytochrome b;
PDBTitle: crystal structure analysis of mutant rhodobacter2 sphaeroides bc1 with stigmatellin and antimycin
19d1q90b_



92.9 19
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
20d2e74a1



91.7 19
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
21d1ppjc2



not modelled 89.6 17
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
22c3cwbC_



not modelled 89.1 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome b;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
23c3cx5N_



not modelled 88.9 15
PDB header:oxidoreductase
Chain: N: PDB Molecule:cytochrome b;
PDBTitle: structure of complex iii with bound cytochrome c in reduced state and2 definition of a minimal core interface for electron transfer.
24d3cx5c2



not modelled 87.7 15
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
25d1bccc3



not modelled 81.2 20
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
26c6f0kC_



not modelled 72.8 16
PDB header:membrane protein
Chain: C: PDB Molecule:polysulphide reductase nrfd;
PDBTitle: alternative complex iii
27c2e76D_



not modelled 61.8 14
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
28c6hwhB_



not modelled 50.4 21
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
29c6btmC_



not modelled 39.4 18
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
30d1nkza_



not modelled 34.3 24
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
31d1ny721



not modelled 27.7 26
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
32d1pgw21



not modelled 27.0 26
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
33d1pgl21



not modelled 25.9 26
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
34c2fyuE_



not modelled 24.1 23
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
35c5npxL_



not modelled 23.7 29
PDB header:virus
Chain: L: PDB Molecule:polyprotein;
PDBTitle: atomic structure of the broad bean stain virus (bbsv) by cryo-em
36c4o2tB_



not modelled 22.0 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4827 family protein (bdi_1692) from2 parabacteroides distasonis atcc 8503 at 2.40 a resolution
37d2axta1



not modelled 21.8 29
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
38d1ijda_



not modelled 20.7 25
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
39c1bmv2_



not modelled 19.8 25
PDB header:virus/rna
Chain: 2: PDB Molecule:protein (icosahedral virus - b and c domain);
PDBTitle: protein-rna interactions in an icosahedral virus at 3.02 angstroms resolution
40c1vw4b_



not modelled 19.1 27
PDB header:ribosome
Chain: B: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
41c2fynO_



not modelled 17.7 24
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
42d1h9aa2



not modelled 15.0 18
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
43d2evea1



not modelled 13.1 23
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Atu2648/PH1033-like
44c6igzH_



not modelled 11.5 20
PDB header:plant protein
Chain: H: PDB Molecule:psah;
PDBTitle: structure of psi-lhci
45c4e9iB_



not modelled 11.3 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: glucose-6-p dehydrogenase (apo form) from trypanosoma cruzi
46c2ky9A_



not modelled 10.8 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ydhk;
PDBTitle: solution nmr structure of ydhk c-terminal domain from b.subtilis,2 northeast structural genomics consortium target target sr518
47d2g2xa1



not modelled 9.9 36
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Atu2648/PH1033-like
48c1h9aA_



not modelled 9.2 18
PDB header:oxidoreductase (choh(d) - nad(p))
Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase;
PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp
49c4lgvA_



not modelled 8.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray crystal structure of glucose-6-phosphate 1-dehydrogenase from2 mycobacterium avium
50c2bfuL_



not modelled 8.7 26
PDB header:virus
Chain: L: PDB Molecule:cowpea mosaic virus, large (l) subunit;
PDBTitle: x-ray structure of cpmv top component
51c2bhlB_



not modelled 8.4 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase (deletion2 variant) complexed with glucose-6-phosphate
52c1qkiE_



not modelled 8.3 21
PDB header:oxidoreductase
Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase (variant2 canton r459l) complexed with structural nadp+
53c1p84E_



not modelled 8.1 9
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
54c1ej6D_



not modelled 7.9 13
PDB header:virus
Chain: D: PDB Molecule:sigma2;
PDBTitle: reovirus core
55c3diiB_



not modelled 7.7 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:short-chain dehydrogenase/reductase sdr;
PDBTitle: crystal structure of a carbohydrate specific scor enzyme2 from clostridium thermocellum, ligand-free form
56d1qkia2



not modelled 7.7 21
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
57c2o01H_



not modelled 7.7 14
PDB header:photosynthesis
Chain: H: PDB Molecule:photosystem i reaction center subunit vi, chloroplast;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
58c6fo2R_



not modelled 7.6 16
PDB header:membrane protein
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: cryoem structure of bovine cytochrome bc1 with no ligand bound
59c2pq4B_



not modelled 6.9 24
PDB header:chaperone/oxidoreductase
Chain: B: PDB Molecule:periplasmic nitrate reductase precursor;
PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide
60c5zjiH_



not modelled 6.6 12
PDB header:membrane protein
Chain: H: PDB Molecule:photosystem i reaction center subunit vi, chloroplastic;
PDBTitle: structure of photosystem i supercomplex with light-harvesting2 complexes i and ii
61c5ghaF_



not modelled 6.1 33
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
62d1r6oc1



not modelled 6.1 9
Fold:ClpS-like
Superfamily:ClpS-like
Family:Adaptor protein ClpS (YljA)
63c2ol5B_



not modelled 6.0 7
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
64c5ykaA_



not modelled 5.9 18
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein kdoo;
PDBTitle: crystal structure of the kdo hydroxylase kdoo, a non-heme fe(ii)2 alphaketoglutarate dependent dioxygenase in complex with cobalt(ii)
65c3llkA_



not modelled 5.5 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfhydryl oxidase 1;
PDBTitle: sulfhydryl oxidase fragment of human qsox1
66d1f46a_



not modelled 5.1 13
Fold:TBP-like
Superfamily:Cell-division protein ZipA, C-terminal domain
Family:Cell-division protein ZipA, C-terminal domain
67d2i5nl1



not modelled 5.1 23
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits

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