Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0226c_(-)_269834_271564
DateTue Jul 23 14:50:28 BST 2019
Unique Job IDb625655bc2a756b5
SequenceVRWFRPGYAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:86.757 Y:82.232 Z:63.756
Model (left) based on template c3wajA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
Confidence and coverage
Confidence: 99.1% Coverage: 80%
463 residues ( 80% of your sequence) have been modelled with 99.1% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3wajA_



99.1 10
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
2c3rceA_



98.6 11
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
3c6eznF_



98.4 12
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
4c5f15A_



97.6 13
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
5c3vu0B_



33.6 12
PDB header:transferase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (afaglb-s2, af_0040, o30195_arcfu) from3 archaeoglobus fulgidus
6c3vgpA_



25.3 14
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase, putative;
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (af_0329) from archaeoglobus fulgidus
7c2l9uA_



25.3 42
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
8c3waiA_



21.9 10
PDB header:transferase, transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, transmembrane
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (afaglb-l, o29867_arcfu) from archaeoglobus3 fulgidus as a mbp fusion
9c4dl0I_



21.1 28
PDB header:hydrolase
Chain: I: PDB Molecule:v-type proton atpase subunit c;
PDBTitle: crystal structure of the heterotrimeric egchead peripheral stalk2 complex of the yeast vacuolar atpase
10d1qkia1



19.9 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
11c6p25A_



18.7 5
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
12d1h9aa1



18.1 26
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
13c5vylA_



17.9 37
PDB header:viral protein
Chain: A: PDB Molecule:inner tegument protein;
PDBTitle: crystal structure of n-terminal half of herpes simplex virus type 12 ul37 protein
14c4k70B_



17.1 25
PDB header:viral protein
Chain: B: PDB Molecule:ul37;
PDBTitle: crystal structure of n-terminal half of pseudorabiesvirus ul37 protein
15d1a77a2



13.1 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
16c3gxgA_



12.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:putative phosphatase (duf442);
PDBTitle: crystal structure of putative phosphatase (duf442) (yp_001181608.1)2 from shewanella putrefaciens cn-32 at 1.60 a resolution
17c4j2lC_



12.0 40
PDB header:transcription regulator
Chain: C: PDB Molecule:protein capicua homolog;
PDBTitle: crystal structure of axh domain complexed with capicua
18c4j2lD_



12.0 40
PDB header:transcription regulator
Chain: D: PDB Molecule:protein capicua homolog;
PDBTitle: crystal structure of axh domain complexed with capicua
19c6p2rB_



11.7 7
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
20c5kzoA_



11.6 17
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
21d1u7la_



not modelled 11.5 28
Fold:Vacuolar ATP synthase subunit C
Superfamily:Vacuolar ATP synthase subunit C
Family:Vacuolar ATP synthase subunit C
22d2i5nm1



not modelled 11.2 18
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
23c2b5dX_



not modelled 10.5 21
PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of the novel alpha-amylase amyc from thermotoga2 maritima
24c2f46A_



not modelled 10.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative phosphatase (nma1982) from neisseria2 meningitidis z2491 at 1.41 a resolution
25d1rxwa2



not modelled 10.1 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
26d1eysl_



not modelled 9.7 11
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
27d1vkia_



not modelled 9.7 6
Fold:YbaK/ProRS associated domain
Superfamily:YbaK/ProRS associated domain
Family:YbaK/ProRS associated domain
28d1eysm_



not modelled 9.6 13
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
29d2axtd1



not modelled 9.4 14
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
30c2m7yA_



not modelled 9.4 29
PDB header:viral protein
Chain: A: PDB Molecule:leader peptide;
PDBTitle: the mengovirus leader protein
31d2j8cm1



not modelled 9.3 15
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
32d2i5nl1



not modelled 9.3 13
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
33d1u6ka1



not modelled 9.2 22
Fold:F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
Superfamily:F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
Family:F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
34c4witB_



not modelled 9.2 20
PDB header:lipid transport
Chain: B: PDB Molecule:predicted protein;
PDBTitle: tmem16 lipid scramblase in crystal form 2
35c1k1yA_



not modelled 9.1 26
PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose
36d2b5dx2



not modelled 9.0 21
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:AmyC N-terminal domain-like
37c3n92A_



not modelled 8.9 25
PDB header:transferase
Chain: A: PDB Molecule:alpha-amylase, gh57 family;
PDBTitle: crystal structure of tk1436, a gh57 branching enzyme from2 hyperthermophilic archaeon thermococcus kodakaraensis, in complex3 with glucose
38d2pp6a1



not modelled 8.8 22
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:gpFII-like
39d2j8cl1



not modelled 8.8 10
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
40d1l9bm_



not modelled 8.8 14
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
41c2lowA_



not modelled 8.7 13
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
42d2axta1



not modelled 8.6 13
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
43c5yq7M_



not modelled 8.2 14
PDB header:photosynthesis
Chain: M: PDB Molecule:precursor for m subunits of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
44c5yq7L_



not modelled 8.1 6
PDB header:photosynthesis
Chain: L: PDB Molecule:precursor for l subunits of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
45c2bhlB_



not modelled 8.0 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase (deletion2 variant) complexed with glucose-6-phosphate
46c2n1pA_



not modelled 8.0 38
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 5b, ns5b;
PDBTitle: structure of the c-terminal membrane domain of hcv ns5b protein
47c6g90J_



not modelled 7.9 50
PDB header:splicing
Chain: J: PDB Molecule:u1 small nuclear ribonucleoprotein component snu71;
PDBTitle: prespliceosome structure provides insight into spliceosome assembly2 and regulation (map a2)
48d1m1ha2



not modelled 7.8 6
Fold:Ferredoxin-like
Superfamily:N-utilization substance G protein NusG, N-terminal domain
Family:N-utilization substance G protein NusG, N-terminal domain
49d1tu7a2



not modelled 7.7 5
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
50c1qkiE_



not modelled 7.4 24
PDB header:oxidoreductase
Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase (variant2 canton r459l) complexed with structural nadp+
51d1ufaa2



not modelled 7.3 21
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:AmyC N-terminal domain-like
52c1a77A_



not modelled 7.3 19
PDB header:5'-3' exo/endo nuclease
Chain: A: PDB Molecule:flap endonuclease-1 protein;
PDBTitle: flap endonuclease-1 from methanococcus jannaschii
53d2cvda2



not modelled 7.2 12
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
54d1k1xa3



not modelled 7.2 26
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:4-alpha-glucanotransferase, N-terminal domain
55c1ufaA_



not modelled 7.2 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tt1467 protein;
PDBTitle: crystal structure of tt1467 from thermus thermophilus hb8
56c1h9aA_



not modelled 6.8 26
PDB header:oxidoreductase (choh(d) - nad(p))
Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase;
PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp
57c5n6mA_



not modelled 6.8 16
PDB header:membrane protein
Chain: A: PDB Molecule:apolipoprotein n-acyltransferase;
PDBTitle: structure of the membrane integral lipoprotein n-acyltransferase lnt2 from p. aeruginosa
58d1m6ja_



not modelled 6.6 20
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
59c3qeaZ_



not modelled 6.4 16
PDB header:hydrolase/dna
Chain: Z: PDB Molecule:exonuclease 1;
PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii)
60c4y8fA_



not modelled 6.4 20
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from clostridium2 perfringens
61c1b43A_



not modelled 6.3 19
PDB header:transferase
Chain: A: PDB Molecule:protein (fen-1);
PDBTitle: fen-1 from p. furiosus
62c3s6dA_



not modelled 6.2 20
PDB header:isomerase
Chain: A: PDB Molecule:putative triosephosphate isomerase;
PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis
63c4y9aB_



not modelled 6.2 20
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from streptomyces2 coelicolor
64d2j07a2



not modelled 6.2 21
Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
65d1b43a2



not modelled 6.1 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
66c5nc8B_



not modelled 6.1 18
PDB header:transport protein
Chain: B: PDB Molecule:potassium efflux system protein;
PDBTitle: shewanella denitrificans kef ctd in amp bound form
67c4mknA_



not modelled 6.1 24
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of chloroplastic triosephosphate isomerase from2 chlamydomonas reinhardtii at 1.1 a of resolution
68c4lgvA_



not modelled 6.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray crystal structure of glucose-6-phosphate 1-dehydrogenase from2 mycobacterium avium
69d2beia1



not modelled 5.9 4
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
70d1ul1x2



not modelled 5.9 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
71c3op6B_



not modelled 5.8 14
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an oligo-nucleotide binding protein (lpg1207)2 from legionella pneumophila subsp. pneumophila str. philadelphia 1 at3 2.00 a resolution
72c5zg5B_



not modelled 5.8 24
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase sadsubaaa mutant from2 opisthorchis viverrini
73c2jgqB_



not modelled 5.8 12
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: kinetics and structural properties of triosephosphate2 isomerase from helicobacter pylori
74c5ujwD_



not modelled 5.8 18
PDB header:isomerase
Chain: D: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from francisella2 tularensis subsp. tularensis schu s4
75c2mkvA_



not modelled 5.8 13
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
76c2ct6A_



not modelled 5.8 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like
PDBTitle: solution structure of the sh3 domain-binding glutamic acid-2 rich-like protein 2
77c3oryA_



not modelled 5.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus
78c2l9uB_



not modelled 5.8 24
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
79c5wsnD_



not modelled 5.7 16
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: structure of japanese encephalitis virus
80c3krsB_



not modelled 5.7 18
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: structure of triosephosphate isomerase from cryptosporidium parvum at2 1.55a resolution
81c3th6B_



not modelled 5.6 18
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from rhipicephalus2 (boophilus) microplus.
82c4e9iB_



not modelled 5.6 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: glucose-6-p dehydrogenase (apo form) from trypanosoma cruzi
83d1o5xa_



not modelled 5.6 0
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
84c3j2pD_



not modelled 5.5 16
PDB header:viral protein
Chain: D: PDB Molecule:small envelope protein m;
PDBTitle: cryoem structure of dengue virus envelope protein heterotetramer
85c4nvtD_



not modelled 5.5 24
PDB header:isomerase
Chain: D: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from brucella2 melitensis
86c4y90B_



not modelled 5.5 29
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from deinococcus2 radiodurans
87c5ibxB_



not modelled 5.5 24
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: 1.65 angstrom crystal structure of triosephosphate isomerase (tim)2 from streptococcus pneumoniae
88d2ozua1



not modelled 5.4 20
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
89d1b9ba_



not modelled 5.4 29
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
90d2ctda2



not modelled 5.3 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
91c3m9yB_



not modelled 5.3 35
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution
92c5uprA_



not modelled 5.3 18
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: x-ray structure of a putative triosephosphate isomerase from2 toxoplasma gondii me49
93d1sw3a_



not modelled 5.3 18
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
94c1yyaA_



not modelled 5.3 18
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8
95c5ireD_



not modelled 5.3 22
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: the cryo-em structure of zika virus
96c1p58F_



not modelled 5.2 13
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
97c1p58E_



not modelled 5.2 13
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
98d1aw1a_



not modelled 5.2 18
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
99d1vpqa_



not modelled 5.2 14
Fold:TIM beta/alpha-barrel
Superfamily:TM1631-like
Family:TM1631-like

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Transmembrane helix prediction 

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