Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0227c_(-)_271574_272839
DateTue Jul 23 14:50:28 BST 2019
Unique Job ID52dc5cb7e1c529ed
SequenceMLRFAACGAI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.280 Y:48.428 Z:53.277
Model (left) based on template c4qa8A_
Top template information
PDB header:lipid transport
Chain: A: PDB Molecule:putative lipoprotein lprf;
PDBTitle: crystal structure of lprf from mycobacterium bovis
Confidence and coverage
Confidence: 97.1% Coverage: 26%
108 residues ( 26% of your sequence) have been modelled with 97.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4qa8A_



97.1 16
PDB header:lipid transport
Chain: A: PDB Molecule:putative lipoprotein lprf;
PDBTitle: crystal structure of lprf from mycobacterium bovis
2c3mhaB_



95.6 21
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein lprg;
PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim
3c4f7bA_



94.8 21
PDB header:cell adhesion
Chain: A: PDB Molecule:lysosome membrane protein 2;
PDBTitle: structure of the lysosomal domain of limp-2
4d2byoa1



94.3 23
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:LppX-like
5c5lgdA_



93.9 27
PDB header:cell adhesion
Chain: A: PDB Molecule:platelet glycoprotein 4;
PDBTitle: the cidra domain from mcvar1 pfemp1 bound to cd36
6c2v43A_



90.3 20
PDB header:regulator
Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb;
PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
7c3bk5A_



90.0 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative outer membrane lipoprotein-sorting protein;
PDBTitle: crystal structure of putative outer membrane lipoprotein-sorting2 protein domain from vibrio parahaemolyticus
8c3buuB_



89.8 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized lola superfamily protein ne2245;
PDBTitle: crystal structure of lola superfamily protein ne2245 from2 nitrosomonas europaea
9c4z48B_



86.7 22
PDB header:structural biology, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1329 family protein (despig_00262) from2 desulfovibrio piger atcc 29098 at 1.75 a resolution
10d2in5a1



76.1 28
Fold:YmcC-like
Superfamily:YmcC-like
Family:YmcC-like
11c6et5b_



59.3 24
PDB header:photosynthesis
Chain: B: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
12c1xrdA_



57.6 38
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
13d1xrda1



57.6 38
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
14c3wmmY_



57.6 19
PDB header:photosynthesis
Chain: Y: PDB Molecule:lh1 alpha polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
15c2kncB_



52.6 21
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
16c2kluA_



43.4 13
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
17c2n2aA_



41.8 25
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
18c6cfwE_



37.4 25
PDB header:membrane protein
Chain: E: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
19c6f0kA_



28.0 18
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
20c5yanE_



27.8 28
PDB header:structural protein
Chain: E: PDB Molecule:collagen;
PDBTitle: deconstructing the salt-bridge network of a computationally designed2 collagen heterotrimer
21c5yanB_



not modelled 25.7 28
PDB header:structural protein
Chain: B: PDB Molecule:collagen;
PDBTitle: deconstructing the salt-bridge network of a computationally designed2 collagen heterotrimer
22c2rmzA_



not modelled 23.7 20
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
23c5zazA_



not modelled 22.3 21
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
24c2l9uA_



not modelled 21.3 14
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
25c2l9uB_



not modelled 21.3 14
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
26c1w8xP_



not modelled 20.3 23
PDB header:virus
Chain: P: PDB Molecule:protein p16;
PDBTitle: structural analysis of prd1
27c2k59B_



not modelled 16.7 18
PDB header:transport protein
Chain: B: PDB Molecule:neuronal acetylcholine receptor subunit beta-2;
PDBTitle: nmr structures of the second transmembrane domain of the2 neuronal acetylcholine receptor beta 2 subunit
28d2hi6a1



not modelled 16.1 55
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:AF0055-like
29c2jwaA_



not modelled 15.8 23
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
30c6hwhX_



not modelled 15.8 24
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
31c6btmD_



not modelled 15.7 21
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
32c2k9yA_



not modelled 15.3 27
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
33c2k9yB_



not modelled 15.3 27
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
34c2m20B_



not modelled 14.8 15
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
35c3monE_



not modelled 14.5 22
PDB header:sweet-tasting protein
Chain: E: PDB Molecule:monellin;
PDBTitle: crystal structures of two intensely sweet proteins
36c2ks1A_



not modelled 14.3 28
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
37c3eh4A_



not modelled 13.5 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c oxidase subunit 1;
PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus
38c1dxzA_



not modelled 13.2 24
PDB header:transmembrane protein
Chain: A: PDB Molecule:acetylcholine receptor protein, alpha chain;
PDBTitle: m2 transmembrane segment of alpha-subunit of nicotinic2 acetylcholine receptor from torpedo californica, nmr, 203 structures
39d1xmea1



not modelled 13.1 26
Fold:Cytochrome c oxidase subunit I-like
Superfamily:Cytochrome c oxidase subunit I-like
Family:Cytochrome c oxidase subunit I-like
40c3uc9A_



not modelled 12.0 31
PDB header:recombination
Chain: A: PDB Molecule:increased recombination centers protein 6;
PDBTitle: crystal structure of yeast irc6p - a novel type of conserved clathrin2 accessory protein
41d3e9va1



not modelled 10.8 83
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
42c5h3wA_



not modelled 10.7 40
PDB header:cell adhesion
Chain: A: PDB Molecule:fibronectin/fibrinogen binding protein;
PDBTitle: the structure of the c-terminal of the fibronectin/fibrinogen-binding2 protein from streptococcus suis (fbps)
43c3jbrE_



not modelled 10.6 18
PDB header:membrane protein
Chain: E: PDB Molecule:voltage-dependent calcium channel gamma-1 subunit;
PDBTitle: cryo-em structure of the rabbit voltage-gated calcium channel cav1.12 complex at 4.2 angstrom
44c3c5mC_



not modelled 10.1 18
PDB header:lyase
Chain: C: PDB Molecule:oligogalacturonate lyase;
PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199
45c1hgzA_



not modelled 10.0 32
PDB header:virus
Chain: A: PDB Molecule:ph75 inovirus major coat protein;
PDBTitle: filamentous bacteriophage ph75
46c1hgvA_



not modelled 10.0 32
PDB header:virus
Chain: A: PDB Molecule:ph75 inovirus major coat protein;
PDBTitle: filamentous bacteriophage ph75
47c2zxeG_



not modelled 9.7 21
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
48c2ysfA_



not modelled 9.7 24
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch
49c6n3qD_



not modelled 9.6 11
PDB header:transport protein
Chain: D: PDB Molecule:protein translocation protein sec63;
PDBTitle: cryo-em structure of the yeast sec complex
50d2z15a1



not modelled 9.6 50
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
51d3proc2



not modelled 9.2 31
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
52d2i9aa1



not modelled 9.2 20
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
53c5lgfA_



not modelled 9.1 31
PDB header:transcription
Chain: A: PDB Molecule:telomerase reverse transcriptase;
PDBTitle: solution structure of the n-terminal domain of ogataea polymorpha2 telomerase reverse transcriptase
54c1ciiA_



not modelled 9.0 14
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
55c1izlC_



not modelled 8.8 37
PDB header:photosynthesis
Chain: C: PDB Molecule:photosystem ii: subunit psbc;
PDBTitle: crystal structure of photosystem ii
56c6b15A_



not modelled 8.7 21
PDB header:sugar binding protein
Chain: A: PDB Molecule:amy13k;
PDBTitle: crystal structure of cbmbc (family cbm26) from eubacterium rectale2 amy13k
57c3be3A_



not modelled 8.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein belonging to pfam duf16532 from bordetella bronchiseptica
58c5uxmA_



not modelled 8.5 23
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: type ii dah7ps from pseudomonas aeruginosa with trp bound
59c2mltA_



not modelled 8.4 29
PDB header:toxin (hemolytic polypeptide)
Chain: A: PDB Molecule:melittin;
PDBTitle: melittin
60c2mltB_



not modelled 8.4 29
PDB header:toxin (hemolytic polypeptide)
Chain: B: PDB Molecule:melittin;
PDBTitle: melittin
61c6o4mA_



not modelled 8.4 29
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: racemic melittin
62c6o4mB_



not modelled 8.4 29
PDB header:toxin
Chain: B: PDB Molecule:melittin;
PDBTitle: racemic melittin
63c6dstA_



not modelled 8.4 29
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: recombinant melittin
64c5kk2E_



not modelled 8.2 15
PDB header:membrane protein, transport protein, sig
Chain: E: PDB Molecule:voltage-dependent calcium channel gamma-2 subunit;
PDBTitle: architecture of fully occupied glua2 ampa receptor - tarp complex2 elucidated by single particle cryo-electron microscopy
65c3h4rA_



not modelled 8.2 25
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease 8;
PDBTitle: crystal structure of e. coli rece exonuclease
66c3rg9A_



not modelled 8.2 14
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate synthase;
PDBTitle: trypanosoma brucei dihydrofolate reductase (tbdhfr) in complex with2 wr99210
67c2m3eA_



not modelled 8.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:integrin alpha-l;
PDBTitle: the integrin alpha l transmembrane domain in bicelles: structure and2 interaction with integrin beta 2
68c2hg5D_



not modelled 7.9 24
PDB header:membrane protein
Chain: D: PDB Molecule:kcsa channel;
PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter
69c4jcbD_



not modelled 7.8 16
PDB header:photosynthesis
Chain: D: PDB Molecule:light-harvesting protein b-875 alpha chain;
PDBTitle: rc-lh1-pufx dimer complex from rhodobacter sphaeroides
70c6nd1A_



not modelled 7.8 11
PDB header:protein transport
Chain: A: PDB Molecule:protein translocation protein sec63;
PDBTitle: cryoem structure of the sec complex from yeast
71d1ttza_



not modelled 7.8 23
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
72c4twmA_



not modelled 7.7 23
PDB header:plant protein
Chain: A: PDB Molecule:dioscorin 5;
PDBTitle: crystal structure of dioscorin from dioscorea japonica
73c5k31E_



not modelled 7.3 22
PDB header:structural protein
Chain: E: PDB Molecule:collagen alpha-1(i) chain;
PDBTitle: crystal structure of human fibrillar procollagen type i c-propeptide2 homo-trimer
74c6cfwC_



not modelled 7.3 5
PDB header:membrane protein
Chain: C: PDB Molecule:monovalent cation/h+ antiporter subunit g;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
75c2xueB_



not modelled 7.3 36
PDB header:oxidoreductase
Chain: B: PDB Molecule:lysine-specific demethylase 6b;
PDBTitle: crystal structure of jmjd3
76c4proD_



not modelled 7.3 45
PDB header:serine protease
Chain: D: PDB Molecule:alpha-lytic protease;
PDBTitle: alpha-lytic protease complexed with pro region
77d2p7tc1



not modelled 7.2 24
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
78c5lnkv_



not modelled 7.2 10
PDB header:oxidoreductase
Chain: V: PDB Molecule:mitochondrial complex i, b14.7 subunit;
PDBTitle: entire ovine respiratory complex i
79c5z08D_



not modelled 7.1 29
PDB header:cell cycle
Chain: D: PDB Molecule:cenp-h;
PDBTitle: the crystal structure of kinetochore subunits cenp-h/i/k triple2 complex
80c4by6B_



not modelled 7.1 24
PDB header:transcription
Chain: B: PDB Molecule:general negative regulator of transcription subunit 2;
PDBTitle: yeast not1-not2-not5 complex
81c2ap7A_



not modelled 7.1 41
PDB header:antibiotic
Chain: A: PDB Molecule:bombinin h2;
PDBTitle: solution structure of bombinin h2 in dpc micelles
82c2jp3A_



not modelled 7.1 17
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
83c4c0fC_



not modelled 7.1 24
PDB header:gene regulation
Chain: C: PDB Molecule:ccr4-not transcription complex subunit 2;
PDBTitle: structure of the not-box domain of human cnot2
84c5td6A_



not modelled 7.0 17
PDB header:rna binding protein
Chain: A: PDB Molecule:fog-3 protein;
PDBTitle: c. elegans fog-3 btg/tob domain - h47n, c117a
85c4c0dB_



not modelled 6.8 24
PDB header:gene regulation
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 2;
PDBTitle: structure of the not module of the human ccr4-not complex2 (cnot1-cnot2-cnot3)
86c2ks1B_



not modelled 6.8 18
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
87c6fzvA_



not modelled 6.8 31
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of the metalloproteinase enhancer pcpe-1 bound to2 the procollagen c propeptide trimer (short)
88c6mjpC_



not modelled 6.8 10
PDB header:lipid transport
Chain: C: PDB Molecule:lipopolysaccharide export system protein lptc;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
89c2c1lA_



not modelled 6.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease;
PDBTitle: structure of the bfii restriction endonuclease
90c2n28A_



not modelled 6.7 14
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
91d2pila_



not modelled 6.7 26
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
92d2o9ux1



not modelled 6.6 22
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Monellin
93d1zaka2



not modelled 6.6 63
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
94c4ezhA_



not modelled 6.6 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 6b;
PDBTitle: the crystal structure of kdm6b bound with h3k27me3 peptide
95d1lgha_



not modelled 6.6 30
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
96d1m1ca_



not modelled 6.4 13
Fold:L-A virus major coat protein
Superfamily:L-A virus major coat protein
Family:L-A virus major coat protein
97c1m1cB_



not modelled 6.4 13
PDB header:virus
Chain: B: PDB Molecule:major coat protein;
PDBTitle: structure of the l-a virus
98c3avsA_



not modelled 6.4 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 6a;
PDBTitle: catalytic fragment of utx/kdm6a bound with n-oxyalylglycine, and2 ni(ii)
99c6cfwI_



not modelled 6.4 16
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase

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Transmembrane helix prediction 

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