Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0228_(-)_273055_274278
DateTue Jul 23 14:50:28 BST 2019
Unique Job IDf630ccb56a80594a
SequenceMGPADESGAP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.979 Y:62.048 Z:42.712
Model (left) based on template c4djiA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
Confidence and coverage
Confidence: 50.3% Coverage: 41%
166 residues ( 41% of your sequence) have been modelled with 50.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4djiA_



50.3 11
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
2c6cfwI_



39.9 14
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
3c2kncA_



32.0 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
4c6mjpF_



23.6 12
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
5d1y6ia2



22.0 23
Fold:GUN4-like
Superfamily:GUN4-like
Family:GUN4-like
6c2wwbB_



20.2 11
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the actively2 translating wheat germ 80s ribosome
7c1f8vA_



20.0 22
PDB header:virus/rna
Chain: A: PDB Molecule:mature capsid protein beta;
PDBTitle: the structure of pariacoto virus reveals a dodecahedral cage of duplex2 rna
8c2f9jP_



19.1 32
PDB header:rna binding protein
Chain: P: PDB Molecule:splicing factor 3b subunit 1;
PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155
9c4gn0D_



12.1 9
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
10d2oara1



11.9 26
Fold:Gated mechanosensitive channel
Superfamily:Gated mechanosensitive channel
Family:Gated mechanosensitive channel
11c2oarA_



10.3 26
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)
12d1rhzb_



8.5 17
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
13c5jefA_



8.4 9
PDB header:transferase
Chain: A: PDB Molecule:nitrate/nitrite sensor protein narq;
PDBTitle: fragment of nitrate/nitrite sensor histidine kinase narq (wt) in2 asymmetric holo state
14c2k1aA_



7.1 24
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
15c3aygA_



6.5 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
16d1z3xa2



6.0 27
Fold:GUN4-like
Superfamily:GUN4-like
Family:GUN4-like
17d1w6ka2



5.5 25
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpene synthases
18c2kogA_



5.3 21
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below