Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0229Ac_(RVBD0229Ac)_274710_274904
DateTue Jul 23 14:50:28 BST 2019
Unique Job IDaea8bfb94c151fe3
SequenceMAKHLVDIDE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.514 Y:19.882 Z:21.840
Model (left) based on template c6a7vU_
Top template information
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
Confidence and coverage
Confidence: 67.8% Coverage: 47%
30 residues ( 47% of your sequence) have been modelled with 67.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6a7vU_



67.8 33
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
2d1puga_



26.0 20
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
3c6izlB_



19.3 64
PDB header:virus
Chain: B: PDB Molecule:mud crab tombus-like virus;
PDBTitle: cryo-em structure of mud crab tombus-like virus at 3.3 angstroms2 resolution
4d1qx8a_



14.0 100
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
5d1gtoa_



12.1 100
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
6d2ijka1



11.9 100
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
7c2w7nA_



11.6 37
PDB header:transcription/dna
Chain: A: PDB Molecule:trfb transcriptional repressor protein;
PDBTitle: crystal structure of kora bound to operator dna: insight into2 repressor cooperation in rp4 gene regulation
8d1pu6a_



11.0 33
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase III (MagIII)
9d1f4nb_



11.0 83
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
10d1f4na_



10.5 83
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
11c5kgzA_



10.5 63
PDB header:virulence factor
Chain: A: PDB Molecule:modulin beta2;
PDBTitle: phenol-soluble modulin beta2
12c3cl3E_



9.9 63
PDB header:viral protein/signaling protein
Chain: E: PDB Molecule:nf-kappa-b essential modulator;
PDBTitle: crystal structure of a vflip-ikkgamma complex: insights into viral2 activation of the ikk signalosome
13c3cl3D_



9.8 63
PDB header:viral protein/signaling protein
Chain: D: PDB Molecule:nf-kappa-b essential modulator;
PDBTitle: crystal structure of a vflip-ikkgamma complex: insights into viral2 activation of the ikk signalosome
14c4jw1B_



9.4 63
PDB header:hydrolase activator
Chain: B: PDB Molecule:effector protein b;
PDBTitle: crystal structure of n-terminal 618-residue fragment of lepb from2 legionella pneumophila
15c5yl1A_



9.2 55
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein;
PDBTitle: t=1 subviral particle of penaeus vannamei nodavirus capsid protein2 deletion mutant (delta 1-37 & 251-368)
16c4i1oD_



8.8 63
PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:lepb;
PDBTitle: crystal structure of the legionella pneumophila gap domain of lepb in2 complex with rab1b bound to gdp and bef3
17d1wjta_



8.6 26
Fold:N-cbl like
Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
18d1nkda_



7.0 100
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
19c5e3eA_



6.1 23
PDB header:toxin
Chain: A: PDB Molecule:cdii immunity protein;
PDBTitle: crystal structure of cdia-ct/cdii complex from y. kristensenii 33638
20c5xauC_



6.0 26
PDB header:cell adhesion
Chain: C: PDB Molecule:laminin subunit gamma-1;
PDBTitle: crystal structure of integrin binding fragment of laminin-511
21c5ly0B_



not modelled 6.0 26
PDB header:transcription
Chain: B: PDB Molecule:lob family transfactor ramosa2.1;
PDBTitle: crystal structure of lob domain of ramosa2 from wheat
22c1yo7A_



not modelled 5.8 100
PDB header:replication regulator
Chain: A: PDB Molecule:regulatory protein rop;
PDBTitle: re-engineering topology of the homodimeric rop protein into a single-2 chain 4-helix bundle
23c1motA_



not modelled 5.7 60
PDB header:membrane protein
Chain: A: PDB Molecule:glycine receptor alpha-1 chain;
PDBTitle: nmr structure of extended second transmembrane domain of2 glycine receptor alpha1 subunit in sds micelles
24c6ab6A_



not modelled 5.5 55
PDB header:virus like particle
Chain: A: PDB Molecule:capsid protein;
PDBTitle: cryo-em structure of t=3 penaeus vannamei nodavirus
25c3bc1F_



not modelled 5.3 40
PDB header:signaling protein/transport protein
Chain: F: PDB Molecule:synaptotagmin-like protein 2;
PDBTitle: crystal structure of the complex rab27a-slp2a
26c5ok8A_



not modelled 5.2 47
PDB header:unknown function
Chain: A: PDB Molecule:lpp20 lipoprotein;
PDBTitle: crystal structure of protein lpp20 (hp1456) from helicobacter pylori

Binding site prediction 

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