Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0229c_(-)_274306_274719
DateTue Jul 23 14:50:28 BST 2019
Unique Job ID64a68bfd6b51349f
SequenceMALKYLLDTS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.028 Y:33.054 Z:38.390
Model (left) based on template c5sv2A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 97%
133 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5sv2A_



100.0 44
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
2c3h87B_



100.0 41
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
3c4chgC_



99.9 21
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
4d1v96a1



99.9 10
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
5c6a7vG_



99.9 29
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
6c3dboB_



99.9 24
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
7c3zvkC_



99.9 20
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
8d1y82a1



99.9 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
9c6nklA_



99.9 19
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
10c3tndC_



99.9 19
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
11c5l6mC_



99.8 24
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
12d2h1ca1



99.8 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
13c4xgrG_



99.8 17
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
14c5x3tD_



99.5 16
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
15d2fe1a1



99.4 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
16c2fe1A_



99.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
17c5wzfB_



99.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
18c3ix7A_



99.0 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
19c3i8oA_



98.8 15
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
20c5ywwA_



98.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
21c5f4hF_



not modelled 98.7 15
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
22d1o4wa_



not modelled 98.5 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
23d1v8pa_



not modelled 98.3 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24d1w8ia_



not modelled 98.3 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25c1v8pK_



not modelled 98.2 20
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
26c2lcqA_



not modelled 98.1 17
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
27c2hwwC_



not modelled 97.4 21
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5yz4A_



not modelled 97.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5jpqd_



not modelled 97.2 16
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c4mj7B_



not modelled 94.5 18
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
31c2hwyB_



not modelled 84.1 13
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c3v32B_



not modelled 70.1 25
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
33c6g5iy_



not modelled 64.5 13
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
34c3v33A_



not modelled 64.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35c3zddA_



not modelled 41.5 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
36d1cmwa2



not modelled 41.4 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37c1sy9B_



not modelled 26.5 36
PDB header:calcium-binding protein
Chain: B: PDB Molecule:cyclic-nucleotide-gated olfactory channel;
PDBTitle: structure of calmodulin complexed with a fragment of the2 olfactory cng channel
38c4mitG_



not modelled 26.2 32
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
39d1tfra2



not modelled 23.2 31
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
40c5gkeB_



not modelled 17.6 22
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
41c1ut8B_



not modelled 16.2 17
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
42c4mitE_



not modelled 15.3 38
PDB header:signaling protein
Chain: E: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
43c2ivfA_



not modelled 12.4 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
44c2qipA_



not modelled 11.8 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
45c1cmwA_



not modelled 10.1 30
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
46c6f8lJ_



not modelled 9.0 15
PDB header:motor protein
Chain: J: PDB Molecule:type iv pilus assembly protein pilf;
PDBTitle: thermus thermophilus pilf atpase (amppnp-bound form)
47c3d23A_



not modelled 8.6 21
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:3c-like proteinase;
PDBTitle: main protease of hcov-hku1
48c2q6fB_



not modelled 8.4 14
PDB header:hydrolase
Chain: B: PDB Molecule:infectious bronchitis virus (ibv) main protease;
PDBTitle: crystal structure of infectious bronchitis virus (ibv) main protease2 in complex with a michael acceptor inhibitor n3
49c2n22B_



not modelled 8.2 50
PDB header:transcription
Chain: B: PDB Molecule:transcription factor p65;
PDBTitle: nmr structure of the complex between the ph domain of the tfb1 subunit2 from tfiih and the transactivation domain of p65
50c5d0qG_



not modelled 8.1 24
PDB header:protein transport
Chain: G: PDB Molecule:outer membrane protein assembly factor bamc;
PDBTitle: bamacde complex, outer membrane beta-barrel assembly machinery (bam)2 complex
51c2cxaA_



not modelled 7.8 9
PDB header:transferase
Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase;
PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli
52d2cxaa1



not modelled 7.8 9
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:LFTR-like
53d1y5ia2



not modelled 7.8 21
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
54c3tloA_



not modelled 7.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:3c-like proteinase;
PDBTitle: crystal structure of hcov-nl63 3c-like protease
55c4g25A_



not modelled 7.3 17
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
56d1q0qa2



not modelled 7.0 27
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
57d1lc0a2



not modelled 6.9 21
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Biliverdin reductase
58c4mozC_



not modelled 6.9 42
PDB header:lyase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: fructose-bisphosphate aldolase from slackia heliotrinireducens dsm2 20476
59d2gp4a2



not modelled 6.5 29
Fold:IlvD/EDD N-terminal domain-like
Superfamily:IlvD/EDD N-terminal domain-like
Family:lvD/EDD N-terminal domain-like
60c4xfqB_



not modelled 6.5 24
PDB header:hydrolase
Chain: B: PDB Molecule:pedv main protease;
PDBTitle: crystal structure basis for pedv 3c like protease
61d1dysa_



not modelled 6.4 20
Fold:7-stranded beta/alpha barrel
Superfamily:Glycosyl hydrolases family 6, cellulases
Family:Glycosyl hydrolases family 6, cellulases
62c1y5iA_



not modelled 6.3 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain;
PDBTitle: the crystal structure of the narghi mutant nari-k86a
63c2h7dB_



not modelled 5.9 17
PDB header:structural protein
Chain: B: PDB Molecule:chimera of 24-mer peptide from integrin beta-3
PDBTitle: solution structure of the talin f3 domain in complex with a2 chimeric beta3 integrin-pip kinase peptide
64c5urnB_



not modelled 5.7 50
PDB header:transcription
Chain: B: PDB Molecule:transcription factor p65;
PDBTitle: nmr structure of the complex between the ph domain of the tfb1 subunit2 from tfiih and the transactivation domain 1 of p65
65c3ebnD_



not modelled 5.6 17
PDB header:hydrolase
Chain: D: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: a special dimerization of sars-cov main protease c-terminal2 domain due to domain-swapping
66d1lvoa_



not modelled 5.4 24
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral cysteine protease of trypsin fold
67d2hi6a1



not modelled 5.3 17
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:AF0055-like
68d1p9sa_



not modelled 5.3 21
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral cysteine protease of trypsin fold

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