Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0235c_(-)_281166_282614
DateTue Jul 23 14:50:29 BST 2019
Unique Job ID1280c3245bfbd239
SequenceMGWFSAPEYW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.285 Y:37.684 Z:32.319
Model (left) based on template c2dmoA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:neutrophil cytosol factor 2;
PDBTitle: refined solution structure of the 1st sh3 domain from human2 neutrophil cytosol factor 2 (ncf-2)
Confidence and coverage
Confidence: 35.4% Coverage: 10%
50 residues ( 10% of your sequence) have been modelled with 35.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2dmoA_



35.4 28
PDB header:signaling protein
Chain: A: PDB Molecule:neutrophil cytosol factor 2;
PDBTitle: refined solution structure of the 1st sh3 domain from human2 neutrophil cytosol factor 2 (ncf-2)
2c4rdbA_



28.2 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:immunoreactive 32 kda antigen pg49;
PDBTitle: crystal structure of an immunoreactive 32 kda antigen pg49 (pg_0181)2 from porphyromonas gingivalis w83 at 1.45 a resolution (psi community3 target, nakayama)
3d1tvxa_



25.9 17
Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
4c2eqiA_



24.0 30
PDB header:immune system, hydrolase
Chain: A: PDB Molecule:phospholipase c, gamma 2;
PDBTitle: solution structure of the sh3 domain from phospholipase c,2 gamma 2
5c3hx6A_



21.6 21
PDB header:cell adhesion
Chain: A: PDB Molecule:type 4 fimbrial biogenesis protein pily1;
PDBTitle: crystal structure of pseudomonas aeruginosa pily1 c-terminal2 domain
6d1ue9a_



21.5 27
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
7c2dbkA_



20.6 20
PDB header:signaling protein
Chain: A: PDB Molecule:crk-like protein;
PDBTitle: solution structures of the sh3 domain of human crk-like2 protein
8d1tvxb_



20.0 17
Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
9c3wmmY_



18.8 23
PDB header:photosynthesis
Chain: Y: PDB Molecule:lh1 alpha polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
10c6et5b_



18.8 17
PDB header:photosynthesis
Chain: B: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
11c2d8hA_



16.9 24
PDB header:unknown function
Chain: A: PDB Molecule:sh3yl1 protein;
PDBTitle: solution structure of the sh3 domain of hypothetical2 protein sh3yl1
12c3h35B_



16.8 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein abo_0056;
PDBTitle: structure of the uncharacterized protein abo_0056 from the2 hydrocarbon-degrading marine bacterium alcanivorax borkumensis sk2.
13c2eyxA_



16.8 25
PDB header:signaling protein
Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog
PDBTitle: c-terminal sh3 domain of ct10-regulated kinase
14c1xrdA_



16.8 28
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
15d1xrda1



16.8 28
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
16d1w7ca2



16.5 32
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
17c4z8aA_



15.9 27
PDB header:rim-binding protein
Chain: A: PDB Molecule:rim-binding protein, isoform f;
PDBTitle: sh3-iii of drosophila rim-binding protein bound to a cacophony derived2 peptide
18c2k2mA_



15.6 27
PDB header:signaling protein
Chain: A: PDB Molecule:eps8-like protein 1;
PDBTitle: structural basis of pxxdy motif recognition in sh3 binding
19c4d1iB_



14.4 21
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase, putative, bgl35a;
PDBTitle: the structure of the gh35 beta-galactosidase bgl35a from2 cellvibrio japonicus
20c4zadB_



14.2 19
PDB header:lyase
Chain: B: PDB Molecule:fdc1;
PDBTitle: structure of c. dubliensis fdc1 with the prenylated-flavin cofactor in2 the iminium form.
21c4lmgD_



not modelled 13.6 41
PDB header:transcription activator/dna
Chain: D: PDB Molecule:iron-regulated transcriptional activator aft2;
PDBTitle: crystal structure of aft2 in complex with dna
22d1l1ca_



not modelled 13.0 39
Fold:GroES-like
Superfamily:SacY-like RNA-binding domain
Family:BglG-like antiterminator proteins
23c3jtzA_



not modelled 12.0 21
PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: structure of the arm-type binding domain of hpi integrase
24c4tkrB_



not modelled 11.9 5
PDB header:membrane protein
Chain: B: PDB Molecule:thiamine transporter thia;
PDBTitle: native-sad phasing for thit from listeria monocytogenes serovar.
25c5douC_



not modelled 11.9 24
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
26c2eyyA_



not modelled 11.4 19
PDB header:signaling protein
Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog
PDBTitle: ct10-regulated kinase isoform i
27d1f9pa_



not modelled 11.2 17
Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
28c3j8eG_



not modelled 10.8 23
PDB header:transport protein/isomerase
Chain: G: PDB Molecule:ryanodine receptor 1;
PDBTitle: cryo-em structure of ryanodine receptor/calstabin-2 complex
29c4za5A_



not modelled 10.5 22
PDB header:lyase
Chain: A: PDB Molecule:fdc1;
PDBTitle: structure of a. niger fdc1 with the prenylated-flavin cofactor in the2 iminium and ketimine forms.
30c2dl3A_



not modelled 10.0 28
PDB header:cell adhesion, signaling protein
Chain: A: PDB Molecule:sorbin and sh3 domain-containing protein 1;
PDBTitle: solution structure of the first sh3 domain of human sorbin2 and sh3 domain-containing protein 1
31c3ju0A_



not modelled 9.9 19
PDB header:dna binding protein
Chain: A: PDB Molecule:phage integrase;
PDBTitle: structure of the arm-type binding domain of hai7 integrase
32c5lxyH_



not modelled 9.9 25
PDB header:rna binding protein
Chain: H: PDB Molecule:zinc finger cchc domain-containing protein 8;
PDBTitle: structure of the minimal rbm7 - zcchc8 complex
33c5kp0A_



not modelled 9.5 20
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein flit,flagellum-specific atp synthase;
PDBTitle: recognition and targeting mechanisms by chaperones in flagella2 assembly and operation
34c5zwo0_



not modelled 9.3 21
PDB header:splicing
Chain: 0: PDB Molecule:pre-mrna-splicing factor 38;
PDBTitle: cryo-em structure of the yeast b complex at average resolution of 3.92 angstrom
35d1plfa_



not modelled 8.9 24
Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
36c2rvbA_



not modelled 8.0 25
PDB header:dna binding protein/transcription
Chain: A: PDB Molecule:dna repair protein complementing xp-c cells;
PDBTitle: solution structure of the complex between xpc acidic domain and tfiih2 p62 ph domain
37c6hu9U_



not modelled 7.8 26
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
38c2okmA_



not modelled 7.7 36
PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of ace19, the collagen binding subdomain2 of enterococcus faecalis surface protein ace
39c5k4bA_



not modelled 7.7 26
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit d;
PDBTitle: structure of eukaryotic translation initiation factor 3 subunit d2 (eif3d) cap binding domain from nasonia vitripennis, crystal form 1
40c1wxtA_



not modelled 7.4 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein flj21522;
PDBTitle: solution structure of the sh3 domain of human hypothetical2 protein flj21522
41d1sq4a_



not modelled 7.4 23
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
42c2i0nA_



not modelled 7.3 18
PDB header:structural protein
Chain: A: PDB Molecule:class vii unconventional myosin;
PDBTitle: structure of dictyostelium discoideum myosin vii sh3 domain2 with adjacent proline rich region
43d1oqya3



not modelled 7.2 17
Fold:XPC-binding domain
Superfamily:XPC-binding domain
Family:XPC-binding domain
44c5eykD_



not modelled 7.2 44
PDB header:transferase
Chain: D: PDB Molecule:inner centromere protein a;
PDBTitle: crystal structure of aurora b in complex with bi 847325
45c4rz9A_



not modelled 7.2 17
PDB header:rna binding protein
Chain: A: PDB Molecule:pre-mrna-splicing factor 38a;
PDBTitle: pre-mrna-splicing factor 38a as 1-179
46c2js0A_



not modelled 7.1 15
PDB header:signaling protein
Chain: A: PDB Molecule:cytoplasmic protein nck1;
PDBTitle: solution structure of second sh3 domain of adaptor nck
47c5muuI_



not modelled 7.0 26
PDB header:virus
Chain: I: PDB Molecule:major outer capsid protein;
PDBTitle: dsrna bacteriophage phi6 nucleocapsid
48c5l2xA_



not modelled 6.9 43
PDB header:transferase/dna
Chain: A: PDB Molecule:dna-directed primase/polymerase protein;
PDBTitle: crystal structure of human primpol ternary complex
49c6h6vF_



not modelled 6.9 29
PDB header:flavoprotein
Chain: F: PDB Molecule:3-polyprenyl-4-hydroxybenzoate decarboxylase and related
PDBTitle: structure of the ubid-class enzyme hmff from pelotomaculum2 thermopropionicum in complex with fmn
50c2ed1A_



not modelled 6.8 20
PDB header:signaling protein
Chain: A: PDB Molecule:130 kda phosphatidylinositol 4,5-biphosphate-
PDBTitle: solution structure of the sh3 domain of 130 kda2 phosphatidylinositol 4,5-biphosphate-dependent arf1 gtpase-3 activating protein
51c2z2sD_



not modelled 6.5 25
PDB header:transcription
Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr;
PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
52d1iowa1



not modelled 6.4 25
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:D-Alanine ligase N-terminal domain
53c4qpwA_



not modelled 6.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 10;
PDBTitle: bixyn10a cbm1 with xylohexaose bound
54d1pfma_



not modelled 6.0 18
Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
55c3h3pT_



not modelled 6.0 20
PDB header:immune system
Chain: T: PDB Molecule:4e10_s0_1tjlc_004_n;
PDBTitle: crystal structure of hiv epitope-scaffold 4e10 fv complex
56d1pvea_



not modelled 6.0 17
Fold:XPC-binding domain
Superfamily:XPC-binding domain
Family:XPC-binding domain
57d2nn6g3



not modelled 6.0 17
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
58c3qc7A_



not modelled 5.8 42
PDB header:viral protein
Chain: A: PDB Molecule:head fiber protein;
PDBTitle: the structure of bacteriophage phi29 head fibers has a supercoiled2 triple repeating helix-turn-helix motif
59d1roda_



not modelled 5.8 20
Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
60c3dwmA_



not modelled 5.8 13
PDB header:transferase
Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a;
PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen
61d1ofcx3



not modelled 5.8 25
Fold:HAND domain of the nucleosome remodeling ATPase ISWI
Superfamily:HAND domain of the nucleosome remodeling ATPase ISWI
Family:HAND domain of the nucleosome remodeling ATPase ISWI
62d1f9ra_



not modelled 5.8 18
Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
63c3h3mB_



not modelled 5.8 35
PDB header:structural genomics
Chain: B: PDB Molecule:flagellar protein flit;
PDBTitle: crystal structure of flagellar protein flit from bordetella2 bronchiseptica
64d2f4mb1



not modelled 5.7 17
Fold:XPC-binding domain
Superfamily:XPC-binding domain
Family:XPC-binding domain
65c4hi2B_



not modelled 5.7 35
PDB header:hydrolase
Chain: B: PDB Molecule:acylphosphatase;
PDBTitle: crystal structure of an acylphosphatase protein cage
66c2l9dA_



not modelled 5.6 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the protein yp_546394.1, the first structural2 representative of the pfam family pf12112
67c2kc1A_



not modelled 5.6 13
PDB header:structural protein
Chain: A: PDB Molecule:mkiaa1027 protein;
PDBTitle: nmr structure of the f0 domain (residues 0-85) of the talin2 ferm domain
68c1xtcC_



not modelled 5.5 24
PDB header:toxin
Chain: C: PDB Molecule:cholera toxin;
PDBTitle: cholera toxin
69c2p4gA_



not modelled 5.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a pyrimidine reductase-like protein (dip1392)2 from corynebacterium diphtheriae nctc at 2.30 a resolution
70c3vzaE_



not modelled 5.5 33
PDB header:cell cycle
Chain: E: PDB Molecule:centromere protein t;
PDBTitle: crystal structure of the chicken spc24-spc25 globular domain in2 complex with cenp-t peptide
71c3vzaF_



not modelled 5.5 33
PDB header:cell cycle
Chain: F: PDB Molecule:centromere protein t;
PDBTitle: crystal structure of the chicken spc24-spc25 globular domain in2 complex with cenp-t peptide
72c2krnA_



not modelled 5.4 27
PDB header:signaling protein
Chain: A: PDB Molecule:cd2-associated protein;
PDBTitle: high resolution structure of the second sh3 domain of cd2ap
73c3cw4A_



not modelled 5.4 26
PDB header:transferase
Chain: A: PDB Molecule:polymerase basic protein 2;
PDBTitle: large c-terminal domain of influenza a virus rna-dependent polymerase2 pb2
74c4fe9A_



not modelled 5.4 14
PDB header:carbohydrate-binding protein
Chain: A: PDB Molecule:outer membrane protein susf;
PDBTitle: crystal structure of susf from bacteroides thetaiotaomicron
75c5n2hA_



not modelled 5.4 16
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: structure of the e9 dna polymerase exonuclease deficient mutant2 (d166a+e168a) from vaccinia virus
76c3nkzD_



not modelled 5.2 25
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:flagellar protein flit;
PDBTitle: the crystal structure of a flagella protein from yersinia2 enterocolitica subsp. enterocolitica 8081
77d1f9qa_



not modelled 5.2 18
Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
78c5a4pA_



not modelled 5.1 15
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 z;
PDBTitle: structure of ube2z provides functional insight into2 specificity in the fat10 conjugation machinery
79d1auua_



not modelled 5.1 28
Fold:GroES-like
Superfamily:SacY-like RNA-binding domain
Family:BglG-like antiterminator proteins
80c6giyC_



not modelled 5.1 31
PDB header:structural protein
Chain: C: PDB Molecule:tssg;
PDBTitle: the baseplate complex from the type vi secretion system
81c4s13D_



not modelled 5.1 19
PDB header:lyase
Chain: D: PDB Molecule:ferulic acid decarboxylase 1;
PDBTitle: ferulic acid decarboxylase (fdc1)
82c5j4aA_



not modelled 5.1 21
PDB header:toxin
Chain: A: PDB Molecule:trna nuclease cdia;
PDBTitle: cdia-ct toxin from burkholderia pseudomallei e479 in complex with2 cognate cdii immunity protein
83d1guqa1



not modelled 5.0 19
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase

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Transmembrane helix prediction 

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