Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0239_(-)_289104_289337
DateTue Jul 23 14:50:30 BST 2019
Unique Job IDb64db988cb7563ea
SequenceMIRTQVQLPD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.174 Y:36.653 Z:46.672
Model (left) based on template c2k5jB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
Confidence and coverage
Confidence: 97.1% Coverage: 78%
60 residues ( 78% of your sequence) have been modelled with 97.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k5jB_



97.1 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
2c5x3tA_



93.4 38
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
3d2bj7a1



84.3 17
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
4c2bj3D_



82.7 14
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
5c4me7E_



79.4 18
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:antitoxin endoai;
PDBTitle: crystal structure of bacillus subtilis toxin mazf in complex with2 cognate antitoxin maze
6c2ca9B_



77.5 19
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
7c2rbfB_



64.6 15
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
8c1q5vB_



64.3 16
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
9c6iyaD_



46.4 16
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
10d1wgea1



39.6 27
Fold:Rubredoxin-like
Superfamily:CSL zinc finger
Family:CSL zinc finger
11c3obcB_



34.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:pyrophosphatase;
PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution
12c6bwqB_



33.3 19
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
13c2k29A_



30.3 23
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
14d2a3qa1



29.5 19
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
15c2q4pA_



29.5 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein rs21-c6;
PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898
16c5cegC_



29.4 15
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
17d1ywsa1



26.6 15
Fold:Rubredoxin-like
Superfamily:CSL zinc finger
Family:CSL zinc finger
18c2lkmA_



23.2 78
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 12;
PDBTitle: structural basis for molecular interactions involving mrg domains:2 implications in chromatin biology
19c2mqkA_



21.9 9
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
20c2l9sA_



19.4 78
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 12;
PDBTitle: solution structure of pf1 sid1-msin3a pah2 complex
21c4hv0B_



not modelled 17.5 28
PDB header:transcription, viral protein
Chain: B: PDB Molecule:avtr;
PDBTitle: structure and function of avtr, a novel transcriptional regulator from2 a hyperthermophilic archaeal lipothrixvirus
22c5frgA_



not modelled 17.1 17
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
23c2jr7A_



not modelled 16.9 27
PDB header:metal binding protein
Chain: A: PDB Molecule:dph3 homolog;
PDBTitle: solution structure of human desr1
24c2k9iB_



not modelled 14.7 25
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
25c3di4A_



not modelled 14.5 14
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf1989;
PDBTitle: crystal structure of a duf1989 family protein (spo0365) from2 silicibacter pomeroyi dss-3 at 1.60 a resolution
26c2jmkA_



not modelled 13.3 15
PDB header:protein binding
Chain: A: PDB Molecule:hypothetical protein ta0956;
PDBTitle: solution structure of ta0956
27c5abxB_



not modelled 13.0 35
PDB header:translation
Chain: B: PDB Molecule:4e-binding protein mextli;
PDBTitle: complex of c. elegans eif4e-3 with the 4e-binding protein2 mextli and cap analog
28c3kk4B_



not modelled 12.5 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
29c3lzcA_



not modelled 11.5 35
PDB header:biosynthetic protein
Chain: A: PDB Molecule:dph2;
PDBTitle: crystal structure of dph2 from pyrococcus horikoshii
30d1qh4a1



not modelled 11.3 24
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
31c2uvaI_



not modelled 11.1 60
PDB header:transferase
Chain: I: PDB Molecule:fatty acid synthase beta subunits;
PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400
32c1x93B_



not modelled 10.8 24
PDB header:transcription
Chain: B: PDB Molecule:hypothetical protein hp0222;
PDBTitle: nmr structure of helicobacter pylori hp0222
33d1x93a1



not modelled 10.8 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
34c1u9pA_



not modelled 10.1 24
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
35c1tu3J_



not modelled 9.8 33
PDB header:protein transport
Chain: J: PDB Molecule:rab gtpase binding effector protein 1;
PDBTitle: crystal structure of rab5 complex with rabaptin5 c-terminal2 domain
36c5waqA_



not modelled 9.1 15
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein assembly factor bamd;
PDBTitle: structure of bamd from neisseria gonorrhoeae
37c2vkzH_



not modelled 9.0 47
PDB header:transferase
Chain: H: PDB Molecule:fatty acid synthase subunit beta;
PDBTitle: structure of the cerulenin-inhibited fungal fatty acid synthase type i2 multienzyme complex
38c1y9qA_



not modelled 9.0 13
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
39c5fujB_



not modelled 8.9 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:mroupo;
PDBTitle: crystallization of a dimeric heme peroxygenase from the2 fungus marasmius rotula
40d2hzaa1



not modelled 8.8 19
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
41d1g0wa1



not modelled 8.8 24
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
42c4v1ag_



not modelled 8.8 33
PDB header:ribosome
Chain: G: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
43c3lr4A_



not modelled 8.7 30
PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: periplasmic domain of the riss sensor protein from burkholderia2 pseudomallei, barium phased at low ph
44c2h1oH_



not modelled 8.4 15
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
45d1i0ea1



not modelled 8.0 24
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
46d1u6ra1



not modelled 7.7 24
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
47d2bsqe1



not modelled 7.5 15
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
48c4b3yB_



not modelled 7.5 40
PDB header:transferase
Chain: B: PDB Molecule:fatty acid synthase;
PDBTitle: cryo-em structure of the mycobacterial fatty acid synthase
49d1vrpa1



not modelled 7.1 17
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
50c3c19A_



not modelled 6.8 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19
51d2hzab1



not modelled 6.6 19
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
52d1p94a_



not modelled 6.6 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
53c2ke4A_



not modelled 6.4 21
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
54c1ceuA_



not modelled 6.4 41
PDB header:viral protein
Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal
PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein
55d1ei5a2



not modelled 6.3 37
Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
56d2gaxa1



not modelled 6.3 20
Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
57c2auwB_



not modelled 6.2 30
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
58c4fxeB_



not modelled 6.2 22
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
59d1au1a_



not modelled 6.2 20
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
60c3qoqC_



not modelled 6.0 23
PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
61d1mnta_



not modelled 5.9 14
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
62d1v9wa_



not modelled 5.8 20
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Txnl5-like
63d1l5aa2



not modelled 5.7 7
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
64c6bxnB_



not modelled 5.7 33
PDB header:biosynthetic protein
Chain: B: PDB Molecule:diphthamide biosynthesis enzyme dph2;
PDBTitle: crystal structure of candidatus methanoperedens nitroreducens dph22 with 4fe-4s cluster and sam
65d1qk1a1



not modelled 5.5 17
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
66c1xrxD_



not modelled 5.4 22
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
67d1xrxa1



not modelled 5.4 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
68d1b5la_



not modelled 5.3 20
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
69d2j5pa1



not modelled 5.1 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FtsK C-terminal domain-like

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