Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0245_(-)_296005_296493
DateTue Jul 23 14:50:30 BST 2019
Unique Job ID1f48a5c69be621f9
SequenceVNSTNNLTPS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.416 Y:42.139 Z:44.991
Model (left) based on template c3pftA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase;
PDBTitle: crystal structure of untagged c54a mutant flavin reductase (dszd) in2 complex with fmn from mycobacterium goodii
Confidence and coverage
Confidence:100.0% Coverage: 96%
156 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3pftA_



100.0 79
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase;
PDBTitle: crystal structure of untagged c54a mutant flavin reductase (dszd) in2 complex with fmn from mycobacterium goodii
2c3rh7A_



100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution
3c5zc2B_



100.0 27
PDB header:flavoprotein
Chain: B: PDB Molecule:p-hydroxyphenylacetate 3-hydroxylase, reductase component;
PDBTitle: acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (hpah),2 reductase component (c1)
4c3nfwB_



100.0 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin reductase-like, fmn-binding protein;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b2 (a0r521 homolog) from mycobacterium thermoresistibile
5c3k87B_



100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:chlorophenol-4-monooxygenase component 1;
PDBTitle: crystal structure of nadh:fad oxidoreductase (tftc) - fad2 complex
6c4l82D_



100.0 23
PDB header:oxidoreductase
Chain: D: PDB Molecule:rifea.00250.a;
PDBTitle: structure of a putative oxidoreductase from rickettsia felis
7c4hx6D_



100.0 33
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase;
PDBTitle: streptomyces globisporus c-1027 nadh:fad oxidoreductase sgce6
8c2qckA_



100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein;
PDBTitle: crystal structure of flavin reductase domain protein (yp_831077.1)2 from arthrobacter sp. fb24 at 1.90 a resolution
9c2r0xA_



100.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible flavin reductase;
PDBTitle: crystal structure of a putative flavin reductase (ycdh, hs_1225) from2 haemophilus somnus 129pt at 1.06 a resolution
10c3cb0B_



100.0 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase;
PDBTitle: cobr
11c4xhyA_



100.0 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein, fmn-binding protein;
PDBTitle: nadh:fmn oxidoreductase from paracoccus denitrificans
12c2d38A_



100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical nadh-dependent fmn oxidoreductase;
PDBTitle: the crystal structure of flavin reductase hpac complexed with nadp+
13d1rz0a_



100.0 24
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
14c2ecrA_



100.0 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase component (hpac) of 4-hydroxyphenylacetate
PDBTitle: crystal structure of the ligand-free form of the flavin reductase2 component (hpac) of 4-hydroxyphenylacetate 3-monooxygenase
15d1wgba_



100.0 21
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
16c4f07A_



100.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:styrene monooxygenase component 2;
PDBTitle: structure of the styrene monooxygenase flavin reductase (smob) from2 pseudomonas putida s12
17d1i0ra_



100.0 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
18c3bnkB_



100.0 15
PDB header:electron transport
Chain: B: PDB Molecule:flavoredoxin;
PDBTitle: x-ray crystal structure of flavoredoxin from methanosarcina2 acetivorans
19c2r6vA_



100.0 18
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein ph0856;
PDBTitle: crystal structure of fmn-binding protein (np_142786.1) from pyrococcus2 horikoshii at 1.35 a resolution
20d1ejea_



100.0 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
21c3hmzA_



not modelled 100.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein, fmn-binding;
PDBTitle: crystal structure of a fmn-binding domain of flavin reductases-like2 enzyme (sbal_0626) from shewanella baltica os155 at 1.50 a resolution
22c3bpkB_



not modelled 100.0 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase component b;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b from2 bacillus cereus
23d1usca_



not modelled 100.0 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
24c4z85A_



not modelled 100.0 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitrobenzoate nitroreductase;
PDBTitle: crystal structur of pseudomonas fluorescens 2-nitrobenzoate 2-2 nitroreductase nbaa
25c3e4vA_



not modelled 100.0 17
PDB header:flavoprotein
Chain: A: PDB Molecule:nadh:fmn oxidoreductase like protein;
PDBTitle: crystal structure of nadh:fmn oxidoreductase like protein in complex2 with fmn (yp_544701.1) from methylobacillus flagellatus kt at 1.40 a3 resolution
26c3fgeA_



not modelled 100.0 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative flavin reductase with split barrel domain;
PDBTitle: crystal structure of putative flavin reductase with split barrel2 domain (yp_750721.1) from shewanella frigidimarina ncimb 400 at 1.743 a resolution
27c2d5mA_



not modelled 100.0 20
PDB header:electron transport
Chain: A: PDB Molecule:flavoredoxin;
PDBTitle: flavoredoxin of desulfovibrio vulgaris (miyazaki f)
28c3b5mD_



not modelled 99.9 13
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved uncharacterized protein from2 rhodopirellula baltica
29d2imla1



not modelled 99.5 19
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
30d2nr4a1



not modelled 98.8 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
31c2ptfB_



not modelled 98.8 9
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein mth_863;
PDBTitle: crystal structure of protein mth_863 from methanobacterium2 thermoautotrophicum bound to fmn
32d2ptfa1



not modelled 98.6 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
33c2q9kA_



not modelled 96.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
34c5escD_



not modelled 96.4 4
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
35d1flma_



not modelled 96.3 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
36c2htdB_



not modelled 95.9 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
37c3tgvD_



not modelled 91.5 13
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
38d1vl7a_



not modelled 91.0 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
39c3f7eB_



not modelled 83.4 16
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
40c2htiA_



not modelled 82.6 8
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
41d2htia1



not modelled 82.6 8
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
42d1rfea_



not modelled 76.0 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
43d1w9aa_



not modelled 75.6 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
44d2hq7a1



not modelled 75.0 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
45c3u0iA_



not modelled 72.6 11
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
46d2fhqa1



not modelled 71.3 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
47c2re7A_



not modelled 66.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
48d2asfa1



not modelled 64.9 6
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
49c3dmbA_



not modelled 59.4 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
50c3db0B_



not modelled 58.0 4
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
51c3u34D_



not modelled 53.7 8
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
52d2i02a1



not modelled 50.0 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
53c3ec6A_



not modelled 46.9 6
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
54c2ig6B_



not modelled 43.7 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
55d1ty9a_



not modelled 42.8 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
56d1t9ma_



not modelled 38.3 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
57d2hq9a1



not modelled 37.9 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
58c3fkhB_



not modelled 36.1 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
59d1dnla_



not modelled 34.5 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
60c1nrgA_



not modelled 33.2 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
61d1nrga_



not modelled 33.2 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
62d2fg9a1



not modelled 32.8 5
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
63c2hhzA_



not modelled 32.3 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
64c5bncB_



not modelled 28.7 11
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
65c3dnhB_



not modelled 24.0 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
66d2arza1



not modelled 20.5 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
67c2iabB_



not modelled 19.7 14
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
68c4hmwB_



not modelled 17.4 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
69d2fura1



not modelled 17.3 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
70d2a2ja1



not modelled 14.6 21
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
71c5wvrA_



not modelled 14.1 21
PDB header:lipid binding protein
Chain: A: PDB Molecule:klla0c04147p;
PDBTitle: crystal structure of osh1 ord domain in complex with cholesterol
72c1zi7C_



not modelled 13.0 38
PDB header:lipid binding protein
Chain: C: PDB Molecule:kes1 protein;
PDBTitle: structure of truncated yeast oxysterol binding protein osh4
73c6eciQ_



not modelled 12.6 13
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
74c2a2jA_



not modelled 12.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
75d1zhxa1



not modelled 11.8 38
Fold:Oxysterol-binding protein-like
Superfamily:Oxysterol-binding protein-like
Family:Oxysterol-binding protein
76c3gasA_



not modelled 10.5 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
77c5zm8A_



not modelled 10.3 38
PDB header:lipid transport
Chain: A: PDB Molecule:oxysterol-binding protein-related protein 2;
PDBTitle: crystal structure of orp2-ord in complex with pi(4,5)p2
78c3cp3A_



not modelled 9.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
79c2ou5B_



not modelled 9.4 9
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
80c1mkyA_



not modelled 9.2 20
PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a switch2 protein containing two gtpase domains
81c4zkyB_



not modelled 9.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
82c4inqA_



not modelled 8.3 45
PDB header:lipid binding protein
Chain: A: PDB Molecule:oxysterol-binding protein homolog 3;
PDBTitle: crystal structure of osh3 ord in complex with pi(4)p from2 saccharomyces cerevisiae
83c2i51B_



not modelled 7.9 9
PDB header:flavoprotein
Chain: B: PDB Molecule:uncharacterized conserved protein of cog5135;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn2 binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at3 1.40 a resolution
84d1mkya3



not modelled 7.8 21
Fold:Alpha-lytic protease prodomain-like
Superfamily:Probable GTPase Der, C-terminal domain
Family:Probable GTPase Der, C-terminal domain
85c4b2zB_



not modelled 7.6 23
PDB header:transport protein
Chain: B: PDB Molecule:oxysterol-binding protein homolog 6;
PDBTitle: structure of osh6 in complex with phosphatidylserine
86d1xhna1



not modelled 7.4 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
87c6qbyA_



not modelled 7.2 15
PDB header:cytosolic protein
Chain: A: PDB Molecule:tubulinyl-tyr carboxypeptidase 2;
PDBTitle: crystal structure of vash 2 in complex with svbp
88d1svba1



not modelled 5.2 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite