Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0249c_(-)_300834_301655
DateTue Jul 23 14:50:31 BST 2019
Unique Job ID1dda95bced74854d
SequenceMSAPTANRPA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.239 Y:11.145 Z:16.030
Model (left) based on template c6odmW_
Top template information
PDB header:viral protein
Chain: W: PDB Molecule:major capsid protein;
PDBTitle: herpes simplex virus type 1 (hsv-1) portal vertex-adjacent2 capsid/catc, asymmetric unit
Confidence and coverage
Confidence: 27.5% Coverage: 3%
9 residues ( 3% of your sequence) have been modelled with 27.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6odmW_
27.5 44
PDB header:viral protein
Chain: W: PDB Molecule:major capsid protein;
PDBTitle: herpes simplex virus type 1 (hsv-1) portal vertex-adjacent2 capsid/catc, asymmetric unit
2d1t61c2
20.0 56
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Noncollagenous (NC1) domain of collagen IV
3c3izbE_
18.2 32
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein rps2 (s5p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
4c3loeA_
14.8 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (f28a mutant)
5c3gnyA_
14.7 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1)
6c3lo1A_
14.6 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (y16a mutant)
7c3hj2B_
13.3 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:human neutrophil peptide 1;
PDBTitle: crystal structure of covalent dimer of hnp1
8c3ixzB_
13.2 36
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
9c4lb7A_
12.4 43
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
10c4lb7E_
12.4 43
PDB header:antimicrobial protein
Chain: E: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
11c4lb7D_
12.4 43
PDB header:antimicrobial protein
Chain: D: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
12c4lb7B_
12.4 43
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
13c4lb1B_
12.2 36
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
14c4lb1E_
12.2 36
PDB header:antimicrobial protein
Chain: E: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
15c4lb1A_
12.2 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
16c4lb1D_
12.2 36
PDB header:antimicrobial protein
Chain: D: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
17c1zmiB_
11.8 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human alpha_defensin-2 (variant gly16->d-ala), p2 32 2 1 space group )
18c1zmkB_
11.8 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human alpha-defensin-2 (variant gly16-> d-ala), p2 42 21 2 space group
19c1zmhB_
11.8 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human neutrophil peptide 2, hnp-2 (variant gly16-2 > d-ala)
20c1zmkA_
11.8 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human alpha-defensin-2 (variant gly16-> d-ala), p2 42 21 2 space group
21c1zmhD_
not modelled 11.8 33
PDB header:antimicrobial protein
Chain: D: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human neutrophil peptide 2, hnp-2 (variant gly16-2 > d-ala)
22c1zmiC_
not modelled 11.8 33
PDB header:antimicrobial protein
Chain: C: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human alpha_defensin-2 (variant gly16->d-ala), p2 32 2 1 space group )
23c1zmhA_
not modelled 11.8 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human neutrophil peptide 2, hnp-2 (variant gly16-2 > d-ala)
24c1zmhC_
not modelled 11.8 33
PDB header:antimicrobial protein
Chain: C: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human neutrophil peptide 2, hnp-2 (variant gly16-2 > d-ala)
25c1zmiA_
not modelled 11.8 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human alpha_defensin-2 (variant gly16->d-ala), p2 32 2 1 space group )
26c1zmiD_
not modelled 11.8 33
PDB header:antimicrobial protein
Chain: D: PDB Molecule:neutrophil defensin 2;
PDBTitle: crystal structure of human alpha_defensin-2 (variant gly16->d-ala), p2 32 2 1 space group )
27c3lo6A_
not modelled 11.6 28
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (w26aba mutant)
28c3lo9A_
not modelled 11.4 28
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (w26ahp mutant)
29c3lo9B_
not modelled 11.4 28
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (w26ahp mutant)
30c3lo6B_
not modelled 11.4 28
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (w26aba mutant)
31c4lbfE_
not modelled 11.2 33
PDB header:antimicrobial protein
Chain: E: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
32c1dfnA_
not modelled 11.0 33
PDB header:defensin
Chain: A: PDB Molecule:defensin hnp-3;
PDBTitle: crystal structure of defensin hnp-3, an amphiphilic dimer: mechanisms2 of membrane permeabilization
33d1dfna_
not modelled 11.0 33
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
34c1dfnB_
not modelled 11.0 33
PDB header:defensin
Chain: B: PDB Molecule:defensin hnp-3;
PDBTitle: crystal structure of defensin hnp-3, an amphiphilic dimer: mechanisms2 of membrane permeabilization
35c4lbfH_
not modelled 10.9 33
PDB header:antimicrobial protein
Chain: H: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
36c4lbfD_
not modelled 10.9 33
PDB header:antimicrobial protein
Chain: D: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
37c3hjdB_
not modelled 10.9 36
PDB header:antimicrobial protein
Chain: B: PDB Molecule:human neutrophil peptide 1;
PDBTitle: x-ray structure of monomeric variant of hnp1
38c3hjdA_
not modelled 10.9 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:human neutrophil peptide 1;
PDBTitle: x-ray structure of monomeric variant of hnp1
39d5crxb2
not modelled 10.9 50
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
40c4lbfF_
not modelled 10.9 33
PDB header:antimicrobial protein
Chain: F: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
41c4lbfA_
not modelled 10.9 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
42c4lbfC_
not modelled 10.9 33
PDB header:antimicrobial protein
Chain: C: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
43c4lbfG_
not modelled 10.9 33
PDB header:antimicrobial protein
Chain: G: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
44c4lbfB_
not modelled 10.9 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
45c2khtA_
not modelled 10.7 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: nmr structure of human alpha defensin hnp-1
46c3gnyB_
not modelled 10.6 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1)
47c3lo4B_
not modelled 10.6 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (r24a mutant)
48c3lo4A_
not modelled 10.6 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (r24a mutant)
49c4du0A_
not modelled 10.5 33
PDB header:antibiotic
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1, hnp1 (g17a mutant)
50c4du0C_
not modelled 10.5 33
PDB header:antibiotic
Chain: C: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1, hnp1 (g17a mutant)
51c4du0D_
not modelled 10.4 33
PDB header:antibiotic
Chain: D: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1, hnp1 (g17a mutant)
52c4du0B_
not modelled 10.4 33
PDB header:antibiotic
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1, hnp1 (g17a mutant)
53c3lvxA_
not modelled 10.4 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (i6a mutant)
54c4lbbA_
not modelled 10.3 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a mutant
55c4lbbB_
not modelled 10.3 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) i20a mutant
56c3lvxB_
not modelled 10.3 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (i6a mutant)
57c3h6cA_
not modelled 10.3 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (mutant gln22ala)
58c3h6cB_
not modelled 10.3 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (mutant gln22ala)
59c5b2gG_
not modelled 10.3 44
PDB header:membrane protein
Chain: G: PDB Molecule:endolysin,claudin-4;
PDBTitle: crystal structure of human claudin-4 in complex with c-terminal2 fragment of clostridium perfringens enterotoxin
60c4iapB_
not modelled 10.2 44
PDB header:lipid binding protein/ hydrorase
Chain: B: PDB Molecule:oxysterol-binding protein homolog 3,endolysin,oxysterol-
PDBTitle: crystal structure of ph domain of osh3 from saccharomyces cerevisiae
61c3lo2A_
not modelled 10.2 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (y21a mutant)
62c3lo2B_
not modelled 10.2 33
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (y21a mutant)
63d1t61a2
not modelled 10.1 63
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Noncollagenous (NC1) domain of collagen IV
64c5kw2A_
not modelled 9.9 44
PDB header:fatty acid binding protein/hydrolase
Chain: A: PDB Molecule:free fatty acid receptor 1,lysozyme,free fatty acid
PDBTitle: the extra-helical binding site of gpr40 and the structural basis for2 allosteric agonism and incretin stimulation
65c2lr5A_
not modelled 9.8 27
PDB header:antimicrobial protein
Chain: A: PDB Molecule:micasin;
PDBTitle: 1h chemical shift assignments for micasin
66d2bosa_
not modelled 9.5 41
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
67c4n9nA_
not modelled 9.4 44
PDB header:transcription
Chain: A: PDB Molecule:sterol uptake control protein 2, lysozyme;
PDBTitle: crystal structure of saccharomyces cerevisiae upc2 transcription2 factor fused with t4 lysozyme
68c5ir6B_
not modelled 9.1 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
69c6a9eA_
not modelled 8.8 44
PDB header:lipid transport
Chain: A: PDB Molecule:endolysin,autophagy-related protein 2;
PDBTitle: crystal structure of the n-terminal domain of atg2
70c5mqcA_
not modelled 8.7 43
PDB header:virus
Chain: A: PDB Molecule:vp1;
PDBTitle: structure of black queen cell virus
71c4xsjA_
not modelled 8.4 44
PDB header:transport protein
Chain: A: PDB Molecule:lysozyme,calcium uniporter protein, mitochondrial;
PDBTitle: crystal structure of the n-terminal domain of the human mitochondrial2 calcium uniporter fused with t4 lysozyme
72d1r4pb_
not modelled 8.0 35
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
73c2voyE_
not modelled 7.9 31
PDB header:hydrolase
Chain: E: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
74c3sn6R_
not modelled 7.9 26
PDB header:signaling protein/hydrolase
Chain: R: PDB Molecule:endolysin,beta-2 adrenergic receptor;
PDBTitle: crystal structure of the beta2 adrenergic receptor-gs protein complex
75c2pm4A_
not modelled 7.6 22
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1 (hnp-1) (hp-1) (hp1) (defensin, alpha
PDBTitle: human alpha-defensin 1 (multiple arg->lys mutant)
76c2pm4B_
not modelled 7.6 22
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1 (hnp-1) (hp-1) (hp1) (defensin, alpha
PDBTitle: human alpha-defensin 1 (multiple arg->lys mutant)
77c5vl1D_
not modelled 7.4 25
PDB header:ligase
Chain: D: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from mycobacterium ulcerans2 complexed with l-lysine
78c4ex5A_
not modelled 7.3 25
PDB header:transferase
Chain: A: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase lysrs from burkholderia2 thailandensis bound to lysine
79c6od8A_
not modelled 7.3 44
PDB header:ligase
Chain: A: PDB Molecule:putative aspartyl-trna synthetase;
PDBTitle: crystal structure of a putative aspartyl-trna synthetase from2 leishmania major friedlin
80c5xa6A_
not modelled 7.1 40
PDB header:toxin
Chain: A: PDB Molecule:bmkdfsin3;
PDBTitle: ion channel modulation by scorpion haemolymph and its defensin2 ingredients uncovers origin of neurotoxins in telson formed in3 paleozoic scorpion
81c5hgqD_
not modelled 7.0 25
PDB header:ligase/ligase inhibitor
Chain: D: PDB Molecule:lysine--trna ligase;
PDBTitle: loa loa lysyl-trna synthetase in complex with cladosporin.
82c5elnC_
not modelled 6.9 31
PDB header:ligase
Chain: C: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from cryptosporidium parvum2 complexed with l-lysine
83d1fftb2
not modelled 6.9 14
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
84c5yqrA_
not modelled 6.8 44
PDB header:transport protein
Chain: A: PDB Molecule:endolysin/membrane-anchored lipid-binding protein lam6
PDBTitle: crystal structure of the ph-like domain of lam6
85d1nmla1
not modelled 6.7 26
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
86c4h02B_
not modelled 6.7 25
PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: crystal structure of p. falciparum lysyl-trna synthetase
87d1gl1i_
not modelled 6.6 50
Fold:PMP inhibitors
Superfamily:PMP inhibitors
Family:PMP inhibitors
88d1c4qa_
not modelled 6.5 29
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
89c1efwA_
not modelled 6.2 19
PDB header:ligase/rna
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli
90c4a8eA_
not modelled 6.0 38
PDB header:cell cycle
Chain: A: PDB Molecule:probable tyrosine recombinase xerc-like;
PDBTitle: the structure of a dimeric xer recombinase from archaea
91c3mdoB_
not modelled 5.9 23
PDB header:ligase
Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution
92c6ns0A_
not modelled 5.7 31
PDB header:ligase
Chain: A: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from chlamydia trachomatis2 complexed with l-lysine and cladosporin
93d1clia2
not modelled 5.7 32
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
94d1f44a2
not modelled 5.6 50
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
95c2a3vA_
not modelled 5.6 50
PDB header:recombination
Chain: A: PDB Molecule:site-specific recombinase inti4;
PDBTitle: structural basis for broad dna-specificity in integron recombination
96c3bjuB_
not modelled 5.5 31
PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: crystal structure of tetrameric form of human lysyl-trna synthetase
97d1iyjb1
not modelled 5.5 32
Fold:BRCA2 helical domain
Superfamily:BRCA2 helical domain
Family:BRCA2 helical domain
98c5ndzA_
not modelled 5.5 44
PDB header:membrane protein
Chain: A: PDB Molecule:lysozyme,proteinase-activated receptor 2,soluble cytochrome
PDBTitle: crystal structure of a thermostabilised human protease-activated2 receptor-2 (par2) in complex with az3451 at 3.6 angstrom resolution
99c4j15A_
not modelled 5.4 38
PDB header:ligase
Chain: A: PDB Molecule:aspartate--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human cytosolic aspartyl-trna synthetase, a2 component of multi-trna synthetase complex

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Transmembrane helix prediction 

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