Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0250c_(-)_301735_302028
DateTue Jul 23 14:50:31 BST 2019
Unique Job ID66d971248cfd8aa3
SequenceLSTTAELAEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.029 Y:41.106 Z:16.311
Model (left) based on template c3he4A_
Top template information
PDB header:de novo protein
Chain: A: PDB Molecule:synzip6;
PDBTitle: heterospecific coiled-coil pair synzip5:synzip6
Confidence and coverage
Confidence: 52.8% Coverage: 29%
28 residues ( 29% of your sequence) have been modelled with 52.8% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3he4A_



52.8 25
PDB header:de novo protein
Chain: A: PDB Molecule:synzip6;
PDBTitle: heterospecific coiled-coil pair synzip5:synzip6
2c2n64B_



40.1 20
PDB header:signaling protein
Chain: B: PDB Molecule:sh3 domain-containing kinase-binding protein 1;
PDBTitle: nmr structure of the c-terminal coiled-coil domain of cin85
3c4cvoA_



35.8 28
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-6;
PDBTitle: crystal structure of the n-terminal colied-coil domain of human dna2 excision repair protein ercc-6
4c1mofA_



30.9 24
PDB header:viral protein
Chain: A: PDB Molecule:moloney murine leukemia virus p15;
PDBTitle: coat protein
5c6a9pD_



30.1 13
PDB header:structural protein
Chain: D: PDB Molecule:glial fibrillary acidic protein;
PDBTitle: crystal structure of the human glial fibrillary acidic protein 1b2 domain
6c3ssuB_



29.4 25
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment
7c3kltB_



26.0 33
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of a vimentin fragment
8c6h9mA_



24.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:coiled-coil domain-containing protein 90b, mitochondrial,
PDBTitle: coiled-coil domain-containing protein 90b residues 43-125 from homo2 sapiens fused to a gcn4 adaptor
9c2n9bB_



23.9 15
PDB header:motor protein/transcription
Chain: B: PDB Molecule:unconventional myosin-x, general control protein gcn4
PDBTitle: solution nmr structure of antiparallel myosin-10:gcn4 tandem coiled-2 coil
10c6e2jB_



22.3 11
PDB header:protein fibril
Chain: B: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between human keratin 1 coil 1b2 containing s233l mutation and wild-type human keratin 10 coil 1b
11d1hywa_



19.4 15
Fold:gpW/XkdW-like
Superfamily:Head-to-tail joining protein W, gpW
Family:Head-to-tail joining protein W, gpW
12c3ol1A_



17.4 11
PDB header:structural protein
Chain: A: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b
13c3pp5A_



17.2 37
PDB header:structural protein
Chain: A: PDB Molecule:brk1;
PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1
14d1st6a5



17.1 28
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
15c2z5dA_



16.4 22
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 h;
PDBTitle: human ubiquitin-conjugating enzyme e2 h
16c3p8cE_



15.4 30
PDB header:protein binding
Chain: E: PDB Molecule:probable protein brick1;
PDBTitle: structure and control of the actin regulatory wave complex
17c3h0gK_



15.4 13
PDB header:transcription
Chain: K: PDB Molecule:dna-directed rna polymerase ii subunit rpb11;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
18c3hroA_



15.3 14
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential (trp) channel subfamily p
PDBTitle: crystal structure of a c-terminal coiled coil domain of transient2 receptor potential (trp) channel subfamily p member 2 (trpp2,3 polycystic kidney disease 2)
19c6b12B_



12.6 38
PDB header:antimicrobial protein
Chain: B: PDB Molecule:tni2;
PDBTitle: structure of tne2 in complex with tni2
20c3iynQ_



12.3 13
PDB header:virus
Chain: Q: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
21c4jrbA_



not modelled 12.2 17
PDB header:lipid binding protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of cockroach allergen bla g 1 tandem repeat as a egfp fusion
22d1wjta_



not modelled 12.1 14
Fold:N-cbl like
Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
23c5apzA_



not modelled 12.1 13
PDB header:dna binding protein
Chain: A: PDB Molecule:general control protein gcn4, nor1 tcar0761, general
PDBTitle: thermosinus carboxydivorans nor1 tcar0761 residues 68-101 and 191-2112 fused to gcn4 adaptors
24c6dk9I_



not modelled 12.1 22
PDB header:lyase
Chain: I: PDB Molecule:dna damage-inducible protein;
PDBTitle: yeast ddi2 cyanamide hydratase
25c3iynR_



not modelled 12.0 16
PDB header:virus
Chain: R: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
26c6gajA_



not modelled 11.4 12
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
27c1s94A_



not modelled 11.4 11
PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:s-syntaxin;
PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei
28d1s94a_



not modelled 11.4 11
Fold:STAT-like
Superfamily:t-snare proteins
Family:t-snare proteins
29d2gfqa1



not modelled 11.2 57
Fold:Phosphorylase/hydrolase-like
Superfamily:AF0625-like
Family:AF0625-like
30d1yqea1



not modelled 10.9 71
Fold:Phosphorylase/hydrolase-like
Superfamily:AF0625-like
Family:AF0625-like
31c1y4mC_



not modelled 10.9 10
PDB header:membrane protein
Chain: C: PDB Molecule:herv-frd_6p24.1 provirus ancestral env polyprotein;
PDBTitle: crystal structure of human endogenous retrovirus herv-frd envelope2 protein (syncitin-2)
32c4jvyA_



not modelled 10.5 19
PDB header:rna binding protein
Chain: A: PDB Molecule:female germline-specific tumor suppressor gld-1;
PDBTitle: structure of the star (signal transduction and activation of rna)2 domain of gld-1 bound to rna
33c2gfqC_



not modelled 10.5 57
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:upf0204 protein ph0006;
PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii
34c4bwdA_



not modelled 10.0 29
PDB header:structural protein
Chain: A: PDB Molecule:short coiled-coil protein;
PDBTitle: human short coiled coil protein
35c4wjgY_



not modelled 9.3 18
PDB header:endocytosis
Chain: Y: PDB Molecule:haptoglobin-hemoglobin receptor;
PDBTitle: structure of t. brucei haptoglobin-hemoglobin receptor binding to2 human haptoglobin-hemoglobin
36c5j0hA_



not modelled 9.1 17
PDB header:de novo protein
Chain: A: PDB Molecule:design construct 2l6hc3_13;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
37c5u0pU_



not modelled 8.7 17
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
38c4jgsI_



not modelled 8.4 25
PDB header:viral protein
Chain: I: PDB Molecule:mlv-related proviral env polyprotein;
PDBTitle: crystal structure of the xmrv tm retroviral fusion core
39c2lf0A_



not modelled 8.4 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yibl;
PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scattering, nesg4 target sfr339/ocsp target sf3636
40c3hrnA_



not modelled 8.3 14
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential (trp) channel subfamily p
PDBTitle: crystal structure of a c-terminal coiled coil domain of transient2 receptor potential (trp) channel subfamily p member 2 (trpp2,3 polycystic kidney disease 2)
41c2wayB_



not modelled 8.2 71
PDB header:hydrolase
Chain: B: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: structure of the human ddx6 c-terminal domain in complex2 with an edc3-fdf peptide
42d1wmib1



not modelled 8.2 13
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:RelB-like
Family:RelB-like
43d2it9a1



not modelled 8.1 19
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:PMN2A0962/syc2379c-like
44c2waxD_



not modelled 7.9 71
PDB header:hydrolase
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: structure of the human ddx6 c-terminal domain in complex2 with an edc3-fdf peptide
45c6dlcA_



not modelled 7.9 22
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein dhd1:234_a;
PDBTitle: designed protein dhd1:234_a, designed protein dhd1:234_b
46c2waxB_



not modelled 7.8 71
PDB header:hydrolase
Chain: B: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: structure of the human ddx6 c-terminal domain in complex2 with an edc3-fdf peptide
47c6cfzD_



not modelled 7.7 17
PDB header:nuclear protein
Chain: D: PDB Molecule:duo1;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
48c3sk7B_



not modelled 7.6 57
PDB header:replication inhibitor
Chain: B: PDB Molecule:protein seqa;
PDBTitle: crystal structure of v. cholerae seqa
49c6nuwF_



not modelled 7.6 33
PDB header:cell cycle
Chain: F: PDB Molecule:inner kinetochore subunit okp1;
PDBTitle: yeast ctf19 complex
50c3qh9A_



not modelled 7.4 26
PDB header:structural protein
Chain: A: PDB Molecule:liprin-beta-2;
PDBTitle: human liprin-beta2 coiled-coil
51c4jf3A_



not modelled 7.3 13
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: crystal structure of the mpmv tm retroviral fusion core
52c4yliA_



not modelled 7.0 19
PDB header:sugar binding protein
Chain: A: PDB Molecule:collectin-11;
PDBTitle: cl-k1 trimer
53c1ljzB_



not modelled 6.9 80
PDB header:receptor, toxin
Chain: B: PDB Molecule:acetylcholine receptor protein;
PDBTitle: nmr structure of an achr-peptide (torpedo californica, alpha-subunit2 residues 182-202) in complex with alpha-bungarotoxin
54d1rp3a1



not modelled 6.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
55d2cuqa1



not modelled 6.7 11
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
56d1yh6a1



not modelled 6.7 22
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
57c4b86H_



not modelled 6.5 20
PDB header:gene regulation
Chain: H: PDB Molecule:male-specific lethal 2 homolog;
PDBTitle: crystal structure of the msl1-msl2 complex (3.5a)
58d1st6a4



not modelled 6.4 15
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
59c5lskB_



not modelled 6.4 9
PDB header:cell cycle
Chain: B: PDB Molecule:polyamine-modulated factor 1;
PDBTitle: crystal structure of the human kinetochore mis12-cenp-c complex
60d1st6a3



not modelled 6.3 15
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
61c1qoyA_



not modelled 6.2 5
PDB header:toxin
Chain: A: PDB Molecule:hemolysin e;
PDBTitle: e.coli hemolysin e (hlye, clya, shea)
62c1jccC_



not modelled 6.0 15
PDB header:membrane protein
Chain: C: PDB Molecule:major outer membrane lipoprotein;
PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations
63c3oa7A_



not modelled 5.9 15
PDB header:structural protein
Chain: A: PDB Molecule:head morphogenesis protein, chaotic nuclear migration
PDBTitle: structure of the c-terminal domain of cnm67, a core component of the2 spindle pole body of saccharomyces cerevisiae
64c4o7kA_



not modelled 5.8 33
PDB header:antitumor protein
Chain: A: PDB Molecule:protein osa;
PDBTitle: crystal structure of oncogenic suppression activity protein - a2 plasmid fertility inhibition factor
65c6hs5A_



not modelled 5.7 25
PDB header:transport protein
Chain: A: PDB Molecule:tssa;
PDBTitle: n-terminal domain including the conserved impa_n region of the tssa2 component of the type vi secretion system from burkholderia3 cenocepacia
66c3u24A_



not modelled 5.5 18
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: the structure of a putative lipoprotein of unknown function from2 shewanella oneidensis.
67c3m9bK_



not modelled 5.5 16
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
68c5k9xA_



not modelled 5.4 8
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha chain from legionella2 pneumophila subsp. pneumophila
69c6cfzE_



not modelled 5.4 19
PDB header:nuclear protein
Chain: E: PDB Molecule:dad4;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
70d2gtsa1



not modelled 5.3 17
Fold:Ferritin-like
Superfamily:HP0062-like
Family:HP0062-like
71d1j3ea_



not modelled 5.3 43
Fold:Replication modulator SeqA, C-terminal DNA-binding domain
Superfamily:Replication modulator SeqA, C-terminal DNA-binding domain
Family:Replication modulator SeqA, C-terminal DNA-binding domain
72c3swkB_



not modelled 5.2 11
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1b fragment
73c5wd9A_



not modelled 5.2 25
PDB header:protein binding
Chain: A: PDB Molecule:lem22;
PDBTitle: crystal structure of legionella pneumophila effector lpg2328

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