Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0259c_(-)_310774_311517
DateTue Jul 23 14:50:32 BST 2019
Unique Job IDf3f1e37a651f42c4
SequenceMNLILTAHGT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:73.378 Y:43.489 Z:40.870
Model (left) based on template c5zt7A_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:sirohydrochlorin ferrochelatase;
PDBTitle: sirb from bacillus subtilis with co2+
Confidence and coverage
Confidence:100.0% Coverage: 94%
232 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5zt7A_



100.0 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:sirohydrochlorin ferrochelatase;
PDBTitle: sirb from bacillus subtilis with co2+
2c2jh3C_



100.0 24
PDB header:ribosomal protein
Chain: C: PDB Molecule:ribosomal protein s2-related protein;
PDBTitle: the crystal structure of dr2241 from deinococcus2 radiodurans at 1.9 a resolution reveals a multi-domain3 protein with structural similarity to chelatases but also4 with two additional novel domains
3c2xvzA_



100.0 21
PDB header:metal binding protein
Chain: A: PDB Molecule:chelatase, putative;
PDBTitle: cobalt chelatase cbik (periplasmatic) from desulvobrio2 vulgaris hildenborough (co-crystallized with cobalt)
4d1qgoa_



100.0 18
Fold:Chelatase-like
Superfamily:Chelatase
Family:Cobalt chelatase CbiK
5c4ccsA_



100.0 21
PDB header:unknown function
Chain: A: PDB Molecule:cbix;
PDBTitle: the structure of cbix, the terminal enzyme for biosynthesis2 of siroheme in denitrifying bacteria
6c1tjnA_



99.9 22
PDB header:lyase
Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase;
PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus
7d1tjna_



99.9 22
Fold:Chelatase-like
Superfamily:Chelatase
Family:CbiX-like
8d2hk6a1



99.9 16
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
9c3lyhB_



99.9 21
PDB header:lyase
Chain: B: PDB Molecule:cobalamin (vitamin b12) biosynthesis cbix protein;
PDBTitle: crystal structure of putative cobalamin (vitamin b12) biosynthesis2 cbix protein (yp_958415.1) from marinobacter aquaeolei vt8 at 1.60 a3 resolution
10d2hrca1



99.8 14
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
11d1lbqa_



99.5 12
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
12d3ct6a1



54.1 9
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:DhaM-like
13d2djia1



44.0 14
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
14d3b48a1



42.2 14
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:DhaM-like
15c2eh6A_



35.0 14
PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
16d1ybha1



34.0 21
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
17c2uwjE_



30.1 19
PDB header:chaperone
Chain: E: PDB Molecule:type iii export protein psce;
PDBTitle: structure of the heterotrimeric complex which regulates type iii2 secretion needle formation
18d2ji7a1



29.4 12
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
19d1pvda1



29.3 21
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
20d1q6za1



27.0 14
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
21d1ovma1



not modelled 26.2 8
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
22d3clsc1



not modelled 26.2 14
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
23d2ez9a1



not modelled 25.6 17
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
24d1ozha1



not modelled 22.4 11
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
25c2e85B_



not modelled 21.0 11
PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase 3 maturation protease;
PDBTitle: crystal structure of the hydrogenase 3 maturation protease
26c5ow0B_



not modelled 19.4 20
PDB header:electron transport
Chain: B: PDB Molecule:electron transfer flavoprotein, beta subunit;
PDBTitle: crystal structure of an electron transfer flavoprotein from2 geobacillus metallireducens
27d1vhna_



not modelled 18.3 14
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
28d2a5la1



not modelled 17.2 18
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
29c5ol2E_



not modelled 16.9 19
PDB header:flavoprotein
Chain: E: PDB Molecule:electron transfer flavoprotein small subunit;
PDBTitle: the electron transferring flavoprotein/butyryl-coa dehydrogenase2 complex from clostridium difficile
30d1zpda1



not modelled 16.8 4
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
31c5ganD_



not modelled 16.5 15
PDB header:transcription
Chain: D: PDB Molecule:spliceosomal protein dib1;
PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
32c2gruB_



not modelled 16.2 6
PDB header:lyase
Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase;
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+
33c6nkeA_



not modelled 16.0 9
PDB header:transferase
Chain: A: PDB Molecule:geranylgeranylglyceryl phosphate synthase;
PDBTitle: wild-type gggps from thermoplasma volcanium
34c4gijC_



not modelled 14.1 11
PDB header:hydrolase
Chain: C: PDB Molecule:pseudouridine-5'-phosphate glycosidase;
PDBTitle: crystal structure of pseudouridine monophosphate glycosidase complexed2 with sulfate
35c5mx2r_



not modelled 13.8 33
PDB header:oxidoreductase
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
36d2ihta1



not modelled 13.4 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
37c4kpuB_



not modelled 13.3 22
PDB header:electron transport
Chain: B: PDB Molecule:electron transfer flavoprotein alpha/beta-subunit;
PDBTitle: electron transferring flavoprotein of acidaminococcus fermentans:2 towards a mechanism of flavin-based electron bifurcation
38c4ub6R_



not modelled 13.3 33
PDB header:electron transport, photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
39c5tisr_



not modelled 13.3 33
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: room temperature xfel structure of the native, doubly-illuminated2 photosystem ii complex
40c5gthR_



not modelled 13.3 33
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native xfel structure of photosystem ii (dark dataset)
41c5ws6R_



not modelled 13.3 33
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native xfel structure of photosystem ii (preflash two-flash dataset
42c5tisR_



not modelled 13.3 33
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: room temperature xfel structure of the native, doubly-illuminated2 photosystem ii complex
43c5kaiR_



not modelled 13.3 33
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd2 illumination (2f) at 2.8 a resolution
44c5ws5R_



not modelled 13.3 33
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native xfel structure of photosystem ii (preflash dark dataset)
45c5gtiR_



not modelled 13.3 33
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native xfel structure of photosystem ii (two flash dataset)
46c4pj0R_



not modelled 13.3 33
PDB header:oxidoreductase, electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
47c3i4jC_



not modelled 13.3 15
PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from deinococcus2 radiodurans
48c5mx2R_



not modelled 13.2 33
PDB header:oxidoreductase
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
49d1s0aa_



not modelled 12.4 15
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
50c3iwpK_



not modelled 12.2 17
PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc
51c5kair_



not modelled 12.0 33
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd2 illumination (2f) at 2.8 a resolution
52c4ub8R_



not modelled 12.0 33
PDB header:electron transport, photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
53c4il6R_



not modelled 12.0 33
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: structure of sr-substituted photosystem ii
54c5kafr_



not modelled 12.0 33
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 3.0 a2 resolution
55c5kafR_



not modelled 12.0 33
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 3.0 a2 resolution
56c4pj0r_



not modelled 12.0 33
PDB header:oxidoreductase, electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
57c3iprC_



not modelled 11.6 10
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
58c5ti8A_



not modelled 11.0 15
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase from pseudomonas
59d3beda1



not modelled 10.6 23
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
60d2gsaa_



not modelled 10.1 17
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
61c6d6zA_



not modelled 9.8 17
PDB header:isomerase
Chain: A: PDB Molecule:nickel-dependent lactate racemase;
PDBTitle: structure of the 2nd lactate racemase homolog apoprotein from2 thermoanaerobacterium thermosaccharolyticum
62c3ckvA_



not modelled 9.6 15
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a mycobacterial protein
63c3lv2A_



not modelled 9.5 18
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin
64d1pdoa_



not modelled 9.2 11
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
65c3wqtB_



not modelled 9.0 19
PDB header:structural genomics
Chain: B: PDB Molecule:cell division protein ftsa;
PDBTitle: staphylococcus aureus ftsa complexed with amppnp
66d1vkma_



not modelled 8.9 8
Fold:Indigoidine synthase A-like
Superfamily:Indigoidine synthase A-like
Family:Indigoidine synthase A-like
67d1nh8a2



not modelled 8.8 11
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
68d1qgva_



not modelled 8.7 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:spliceosomal protein U5-15Kd
69c5vyeA_



not modelled 8.5 10
PDB header:lyase
Chain: A: PDB Molecule:l-threonine aldolase;
PDBTitle: crystal structure of l-threonine aldolase from pseudomonas putida
70c2vbgB_



not modelled 8.3 14
PDB header:lyase
Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase;
PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp
71d1u7na_



not modelled 7.9 14
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:PlsX-like
72c2h90A_



not modelled 7.6 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin
73c3mtqA_



not modelled 7.5 15
PDB header:transferase
Chain: A: PDB Molecule:putative phosphoenolpyruvate-dependent sugar
PDBTitle: crystal structure of a putative phosphoenolpyruvate-dependent sugar2 phosphotransferase system (pts) permease (kpn_04802) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a resolution
74d1qopa_



not modelled 7.4 10
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
75c3dodA_



not modelled 7.3 12
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis
76c3gr7A_



not modelled 7.1 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal crystal form
77c4jicB_



not modelled 7.1 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:gtn reductase;
PDBTitle: glycerol trinitrate reductase nera from agrobacterium radiobacter
78d2nlya1



not modelled 7.0 10
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:Divergent polysaccharide deacetylase
79d1vpea_



not modelled 6.9 16
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
80c6fmgC_



not modelled 6.9 20
PDB header:transferase
Chain: C: PDB Molecule:pts system mannose-specific transporter subunit iiab;
PDBTitle: structure of the mannose transporter iia domain from streptococcus2 pneumoniae
81c4tkzA_



not modelled 6.9 26
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein gbs1890;
PDBTitle: crystal structure of phosphotransferase system component eiia from2 streptococcus agalactiae
82d1z41a1



not modelled 6.7 9
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
83c5zbyA_



not modelled 6.4 14
PDB header:hydrolase
Chain: A: PDB Molecule:hydrogenase maturation protease hyci;
PDBTitle: crystal structure of a [nife] hydrogenase maturation protease hyci2 from thermococcus kodakarensis kod1
84c4rflB_



not modelled 6.4 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycerol-1-phosphate dehydrogenase [nad(p)+];
PDBTitle: crystal structure of g1pdh with nadph from methanocaldococcus2 jannaschii
85c4xfrB_



not modelled 6.2 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a domain of unknown function (duf1537) from2 bordetella bronchiseptica (bb3215), target efi-511620, with bound3 citrate, domain swapped dimer, space group p6522
86c5m99A_



not modelled 6.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: functional characterization and crystal structure of thermostable2 amylase from thermotoga petrophila, reveals high thermostability and3 an archaic form of dimerization
87c3h75A_



not modelled 6.1 11
PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic sugar-binding domain protein;
PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens
88d1v6sa_



not modelled 5.9 13
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase
89d1djqa1



not modelled 5.7 13
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
90c3s99A_



not modelled 5.6 17
PDB header:lipid binding protein
Chain: A: PDB Molecule:basic membrane lipoprotein;
PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak
91c5kinC_



not modelled 5.5 22
PDB header:lyase
Chain: C: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha beta complex from2 streptococcus pneumoniae
92c5t3uA_



not modelled 5.4 9
PDB header:transport protein
Chain: A: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the pts iia protein associated with the fucose2 utilization operon from streptococcus pneumoniae
93c3vndD_



not modelled 5.3 17
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-subunit from the2 psychrophile shewanella frigidimarina k14-2
94c4r9nA_



not modelled 5.2 10
PDB header:transcription
Chain: A: PDB Molecule:lmo0547 protein;
PDBTitle: deor family transcriptional regulator from listeria monocytogenes.
95d1ydha_



not modelled 5.2 11
Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
96c2kc8B_



not modelled 5.1 48
PDB header:toxin/toxin repressor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: structure of e. coli toxin rele (r81a/r83a) mutant in2 complex with antitoxin relbc (k47-l79) peptide
97c6erkB_



not modelled 5.1 11
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of diaminopelargonic acid aminotransferase from2 psychrobacter cryohalolentis
98c3cf4G_



not modelled 5.1 13
PDB header:oxidoreductase
Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
99c2kvcA_



not modelled 5.1 13
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a

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