Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0261c_(narK3)_312759_314168
DateTue Jul 23 14:50:32 BST 2019
Unique Job ID39d04aed8f6092bb
SequenceMGRSHQISDW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.457 Y:69.347 Z:67.520
Model (left) based on template c4iu8A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
Confidence and coverage
Confidence:100.0% Coverage: 90%
421 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4iu8A_
100.0 27
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
2c4iu9A_
100.0 30
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
3d1pw4a_
100.0 10
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
4c6e9oA_
100.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
5c3wdoA_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
6c4ldsB_
100.0 13
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:bicyclomycin resistance protein tcab;
PDBTitle: the inward-facing structure of the glucose transporter from2 staphylococcus epidermidis
7c6g9xB_
100.0 16
PDB header:membrane protein
Chain: B: PDB Molecule:major facilitator superfamily mfs_1;
PDBTitle: crystal structure of a mfs transporter at 2.54 angstroem resolution
8c6h7dA_
100.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:sugar transport protein 10;
PDBTitle: crystal structure of a. thaliana sugar transport protein 10 in complex2 with glucose in the outward occluded state
9c3o7pA_
100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
10c5c65A_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: structure of the human glucose transporter glut3 / slc2a3
11c4cl5B_
100.0 12
PDB header:transport protein
Chain: B: PDB Molecule:nitrate transporter 1.1;
PDBTitle: crystal structure of the nitrate transporter nrt1.1 from2 arabidopsis thaliana in complex with nitrate.
12c4ybqB_
100.0 12
PDB header:transport protein/immune system
Chain: B: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: rat glut5 with fv in the outward-open form
13c6gs7A_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:dipeptide and tripeptide permease a;
PDBTitle: crystal structure of peptide transporter dtpa-nanobody in glycine2 buffer
14c4j05A_
100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:phosphate transporter;
PDBTitle: crystal structure of a eukaryotic phosphate transporter
15c4zp0A_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:multidrug transporter mdfa;
PDBTitle: crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
16c6exsA_
100.0 10
PDB header:membrane protein
Chain: A: PDB Molecule:peptide abc transporter permease;
PDBTitle: crystal structure of a pot family transporter in complex with2 thioalcohol conjugated peptide.
17c4ikyA_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
18c4w6vA_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:di-/tripeptide transporter;
PDBTitle: crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
19c6ei3A_
100.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:proton-dependent oligopeptide transporter family protein;
PDBTitle: crystal structure of auto inhibited pot family peptide transporter
20c4apsB_
100.0 11
PDB header:transport protein
Chain: B: PDB Molecule:di-or tripeptide h+ symporter;
PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation.
21d1pv7a_
not modelled 100.0 12
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:LacY-like proton/sugar symporter
22c1pv7B_
not modelled 100.0 12
PDB header:transport protein
Chain: B: PDB Molecule:lactose permease;
PDBTitle: crystal structure of lactose permease with tdg
23c4pypA_
not modelled 100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: crystal structure of the human glucose transporter glut1
24c4q65A_
not modelled 100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:dipeptide permease d;
PDBTitle: structure of the e. coli peptide transporter ybgh
25c4gbzA_
not modelled 100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:d-xylose-proton symporter;
PDBTitle: the structure of the mfs (major facilitator superfamily) proton:xylose2 symporter xyle bound to d-glucose
26c4lepB_
not modelled 100.0 12
PDB header:membrane protein, tranport protein
Chain: B: PDB Molecule:proton:oligopeptide symporter pot family;
PDBTitle: structural insights into substrate recognition in proton dependent2 oligopeptide transporters
27c2gfpA_
not modelled 100.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
28c2xutC_
not modelled 100.0 14
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot) family2 transporter.
29c5aynA_
not modelled 99.9 9
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
30c5aymA_
not modelled 99.9 8
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron
31c4m64D_
not modelled 99.8 11
PDB header:transport protein
Chain: D: PDB Molecule:melibiose carrier protein;
PDBTitle: 3d crystal structure of na+/melibiose symporter of salmonella2 typhimurium
32c6ob7A_
not modelled 99.5 10
PDB header:transport protein
Chain: A: PDB Molecule:equilibrative nucleoside transporter 1;
PDBTitle: human equilibrative nucleoside transporter-1, dilazep bound
33c3b9yA_
not modelled 70.8 12
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
34c3hd6A_
not modelled 42.8 7
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
35c3mp6A_
not modelled 41.8 27
PDB header:histone binding protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,linker,saga-associated
PDBTitle: complex structure of sgf29 and dimethylated h3k4
36c6eu6A_
not modelled 27.6 11
PDB header:membrane protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: sensor amt protein
37c2rddB_
not modelled 20.6 11
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
38c2gleA_
not modelled 17.1 20
PDB header:protein binding
Chain: A: PDB Molecule:neurabin-1;
PDBTitle: solution structure of neurabin sam domain
39c2l92A_
not modelled 16.5 24
PDB header:dna binding protein
Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns;
PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f
40c5aezA_
not modelled 15.4 10
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
41c6hwhB_
not modelled 13.9 11
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
42c3qnqD_
not modelled 13.5 18
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
43c6bx3N_
not modelled 10.7 31
PDB header:gene regulation/transferase
Chain: N: PDB Molecule:compass component sdc1;
PDBTitle: structure of histone h3k4 methyltransferase
44c2k04D_
not modelled 10.5 25
PDB header:cytokine
Chain: D: PDB Molecule:c-x-c chemokine receptor type 4;
PDBTitle: structure of sdf1 in complex with the cxcr4 n-terminus containing no2 sulfotyrosines
45c2g9pA_
not modelled 10.4 21
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
46c2e8pA_
not modelled 10.3 15
PDB header:signaling protein
Chain: A: PDB Molecule:elf3 protein;
PDBTitle: solution structure of the n-terminal sam-domain of e74-like2 factor 3
47c5aexB_
not modelled 9.9 12
PDB header:membrane protein
Chain: B: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
48c6oh2A_
not modelled 9.7 10
PDB header:transport protein
Chain: A: PDB Molecule:cmp-sialic acid transporter;
PDBTitle: x-ray crystal structure of the mouse cmp-sialic acid transporter in2 complex with cmp, by lipidic cubic phase
49c5a4hA_
not modelled 9.6 33
PDB header:transferase
Chain: A: PDB Molecule:1-acylglycerol-3-phosphate o-acyltransferase abhd5;
PDBTitle: solution structure of the lipid droplet anchoring peptide2 of cgi-58 bound to dpc micelles
50c6chgE_
not modelled 8.6 31
PDB header:transferase
Chain: E: PDB Molecule:klla0e03521p;
PDBTitle: crystal structure of the yeast compass catalytic module
51d2z15a1
not modelled 8.4 36
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
52c6r8fG_
not modelled 8.3 22
PDB header:signaling protein
Chain: G: PDB Molecule:brisc and brca1-a complex member 2,brcc45 (bre, brisc and
PDBTitle: cryo-em structure of the human brisc-shmt2 complex
53c6r8fE_
not modelled 8.3 22
PDB header:signaling protein
Chain: E: PDB Molecule:brisc and brca1-a complex member 2,brcc45 (bre, brisc and
PDBTitle: cryo-em structure of the human brisc-shmt2 complex
54d3e9va1
not modelled 8.3 36
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
55c2kjeB_
not modelled 8.2 50
PDB header:transcription
Chain: B: PDB Molecule:early e1a 32 kda protein;
PDBTitle: nmr structure of cbp taz2 and adenoviral e1a complex
56c2nuuF_
not modelled 7.7 12
PDB header:transport protein/signaling protein
Chain: F: PDB Molecule:ammonia channel;
PDBTitle: regulating the escherichia coli ammonia channel: the crystal structure2 of the amtb-glnk complex
57c5td6A_
not modelled 7.3 21
PDB header:rna binding protein
Chain: A: PDB Molecule:fog-3 protein;
PDBTitle: c. elegans fog-3 btg/tob domain - h47n, c117a
58c4mhvB_
not modelled 7.3 18
PDB header:transcription
Chain: B: PDB Molecule:protein c-ets-2;
PDBTitle: crystal structure of the pnt domain of human ets2
59c3hftA_
not modelled 7.2 33
PDB header:hydrolase
Chain: A: PDB Molecule:wbms, polysaccharide deacetylase involved in o-antigen
PDBTitle: crystal structure of a putative polysaccharide deacetylase involved in2 o-antigen biosynthesis (wbms, bb0128) from bordetella bronchiseptica3 at 1.90 a resolution
60d1sv0c_
not modelled 7.2 27
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
61d1sxda_
not modelled 7.1 27
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
62d1sv0a_
not modelled 6.7 27
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
63c5t86A_
not modelled 6.7 38
PDB header:toxin
Chain: A: PDB Molecule:cdia toxin;
PDBTitle: crystal structure of cdi complex from e. coli a0 34/86
64c4od5C_
not modelled 6.7 13
PDB header:transferase
Chain: C: PDB Molecule:4-hydroxybenzoate octaprenyltransferase;
PDBTitle: substrate-bound structure of a ubia homolog from aeropyrum pernix k1
65c3lgeF_
not modelled 6.5 43
PDB header:lyase/protein binding
Chain: F: PDB Molecule:sorting nexin-9;
PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex
66c3lgeG_
not modelled 6.5 43
PDB header:lyase/protein binding
Chain: G: PDB Molecule:sorting nexin-9;
PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex
67c2zxeG_
not modelled 6.4 13
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
68c3o6xC_
not modelled 6.3 13
PDB header:ligase
Chain: C: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis
69d1ji7a_
not modelled 6.1 9
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
70c3jcuz_
not modelled 5.9 13
PDB header:membrane protein
Chain: Z: PDB Molecule:photosystem ii reaction center protein z;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
71c2dkxA_
not modelled 5.9 27
PDB header:signaling protein
Chain: A: PDB Molecule:sam pointed domain-containing ets transcription
PDBTitle: solution structure of the sam_pnt-domain of ets2 transcription factor pdef (prostate ets)
72c6hwhX_
not modelled 5.9 10
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
73c2o8kA_
not modelled 5.8 19
PDB header:transcription/dna
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
74c4ev6E_
not modelled 5.8 25
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
75c5gyqA_
not modelled 5.7 31
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein;
PDBTitle: putative receptor-binding domain of bat-derived coronavirus hku9 spike2 protein
76c2bbjB_
not modelled 5.7 7
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
77d1bqva_
not modelled 5.7 27
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
78c2jr1A_
not modelled 5.7 16
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence regulator;
PDBTitle: solution structure of the dna binding domain of a nucleoid-associated2 protein, h-ns, from the phytopathogen xylella fastidiosa.
79c4k1cA_
not modelled 5.6 11
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
80c2m0oA_
not modelled 5.6 24
PDB header:peptide binding protein
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: the solution structure of human phf1 in complex with h3k36me3
81c2nudD_
not modelled 5.4 43
PDB header:toxin/protein binding
Chain: D: PDB Molecule:rpm1-interacting protein 4;
PDBTitle: the structure of the type iii effector avrb complexed with2 a high-affinity rin4 peptide
82c2nudC_
not modelled 5.4 43
PDB header:toxin/protein binding
Chain: C: PDB Molecule:rpm1-interacting protein 4;
PDBTitle: the structure of the type iii effector avrb complexed with2 a high-affinity rin4 peptide
83c5u6fA_
not modelled 5.3 30
PDB header:cell adhesion
Chain: A: PDB Molecule:lpxtg-motif cell wall anchor domain protein;
PDBTitle: bacterial adhesin from mobiluncus mulieris containing intramolecular2 disulfide, isopeptide, and ester bond cross-links (space group p21)
84c5m73H_
not modelled 5.1 30
PDB header:rna binding protein
Chain: H: PDB Molecule:signal recognition particle subunit srp72;
PDBTitle: structure of the human srp s domain with srp72 rna-binding domain
85c6gjeA_
not modelled 5.0 11
PDB header:protein transport
Chain: A: PDB Molecule:protein amnionless;
PDBTitle: structure of the amnionless(20-357)-cubilin(36-135) complex

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below