Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0264c_(-)_315783_316415
DateTue Jul 23 14:50:32 BST 2019
Unique Job ID4da226e186c97a40
SequenceMDAALACTVL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.006 Y:48.332 Z:48.833
Model (left) based on template c3mmlD_
Top template information
PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
Confidence and coverage
Confidence:100.0% Coverage: 97%
203 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3mmlD_



100.0 64
PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
2c2phcB_



100.0 27
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
3c3oepA_



100.0 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0988;
PDBTitle: crystal structure of ttha0988 in space group p43212
4c5dudB_



100.0 32
PDB header:unknown function
Chain: B: PDB Molecule:ybgj;
PDBTitle: crystal structure of e. coli ybgjk
5d2phcb1



100.0 34
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
6c2zp2B_



100.0 37
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
7c5i8iD_



100.0 18
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
8c3va7A_



100.0 18
PDB header:ligase
Chain: A: PDB Molecule:klla0e08119p;
PDBTitle: crystal structure of the kluyveromyces lactis urea carboxylase
9c2kwaA_



99.5 18
PDB header:transferase inhibitor
Chain: A: PDB Molecule:kinase a inhibitor;
PDBTitle: 1h, 13c and 15n backbone and side chain resonance assignments of the2 n-terminal domain of the histidine kinase inhibitor kipi from3 bacillus subtilis
10d2phcb2



99.4 14
Fold:DCoH-like
Superfamily:PH0987 N-terminal domain-like
Family:PH0987 N-terminal domain-like
11c2qf7A_



97.0 15
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase protein;
PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli
12c3bg5B_



95.8 13
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of staphylococcus aureus pyruvate carboxylase
13c5vz0D_



95.5 16
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of lactococcus lactis pyruvate carboxylase g746a2 mutant in complex with cyclic-di-amp
14c3hblA_



95.3 13
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of s. aureus pyruvate carboxylase t908a mutant
15c4hnvB_



90.1 11
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of r54e mutant of s. aureus pyruvate carboxylase
16c3tw6B_



89.6 10
PDB header:ligase/activator
Chain: B: PDB Molecule:pyruvate carboxylase protein;
PDBTitle: structure of rhizobium etli pyruvate carboxylase t882a with the2 allosteric activator, acetyl coenzyme-a
17c4qskB_



74.9 14
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of l. monocytogenes pyruvate carboxylase in complex2 with cyclic-di-amp
18d1nzaa_



73.5 14
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
19c3mmlE_



70.3 24
PDB header:hydrolase
Chain: E: PDB Molecule:allophanate hydrolase subunit 2;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
20d1nwaa_



62.6 18
Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
21c1nwaA_



not modelled 62.6 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine
22c5fa9B_



not modelled 60.7 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: bifunctional methionine sulfoxide reductase ab (msrab) from treponema2 denticola
23c2j89A_



not modelled 60.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
24c5dudA_



not modelled 57.4 16
PDB header:unknown function
Chain: A: PDB Molecule:ybgk;
PDBTitle: crystal structure of e. coli ybgjk
25c4iyqB_



not modelled 51.5 17
PDB header:protein binding
Chain: B: PDB Molecule:divalent ion tolerance protein cuta1;
PDBTitle: crystal structure of divalent ion tolerance protein cuta1 from2 ehrlichia chaffeensis
26d1osce_



not modelled 49.5 15
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
27c2dy3B_



not modelled 48.5 18
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum
28c2k6zA_



not modelled 45.4 32
PDB header:metal transport
Chain: A: PDB Molecule:putative uncharacterized protein ttha1943;
PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14)
29c3jt0B_



not modelled 45.4 20
PDB header:structural protein
Chain: B: PDB Molecule:lamin-b1;
PDBTitle: crystal structure of the c-terminal fragment (426-558) lamin-b1 from2 homo sapiens, northeast structural genomics consortium target hr5546a
30d2cbpa_



not modelled 44.1 18
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
31c1xk8A_



not modelled 42.8 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:divalent cation tolerant protein cuta;
PDBTitle: divalent cation tolerant protein cuta from homo sapiens o60888
32d2zfha1



not modelled 42.8 13
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
33d1l0oc_



not modelled 42.3 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
34c1l0oC_



not modelled 42.3 30
PDB header:protein binding
Chain: C: PDB Molecule:sigma factor;
PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf
35c3zk0A_



not modelled 41.7 8
PDB header:chaperone
Chain: A: PDB Molecule:sco3965;
PDBTitle: the crystal structure of a cu(i) metallochaperone from2 streptomyces lividans in its apo form
36d1mdah_



not modelled 41.0 13
Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
37c2mntA_



not modelled 40.9 14
PDB header:isomerase
Chain: A: PDB Molecule:tbpar42;
PDBTitle: solution structure of the ppiase domain of tbpar42
38c2zfhA_



not modelled 39.4 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cuta;
PDBTitle: crystal structure of putative cuta1 from homo sapiens at 2.05a2 resolution
39c3ahpA_



not modelled 37.4 15
PDB header:electron transport
Chain: A: PDB Molecule:cuta1;
PDBTitle: crystal structure of stable protein, cuta1, from a psychrotrophic2 bacterium shewanella sp. sib1
40c4dzaA_



not modelled 37.1 28
PDB header:isomerase
Chain: A: PDB Molecule:lysine racemase;
PDBTitle: crystal structure of a lysine racemase within internal aldimine2 linkage
41c2zomC_



not modelled 36.9 10
PDB header:unknown function
Chain: C: PDB Molecule:protein cuta, chloroplast, putative, expressed;
PDBTitle: crystal structure of cuta1 from oryza sativa
42d1whza_



not modelled 36.7 18
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YcfA-like
43c1yw5A_



not modelled 36.0 21
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase;
PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans
44c4lwlA_



not modelled 35.8 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: crystal structure of methionine sulfoxide reductase u16c/e55a from2 clostridium oremlandii
45d1pina2



not modelled 35.6 36
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
46c1kzlA_



not modelled 35.4 15
PDB header:transferase
Chain: A: PDB Molecule:riboflavin synthase;
PDBTitle: riboflavin synthase from s.pombe bound to2 carboxyethyllumazine
47c3h87D_



not modelled 35.4 26
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
48c6bjuD_



not modelled 35.2 11
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
49d1eq3a_



not modelled 34.0 27
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
50d1m5ya3



not modelled 32.9 27
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
51d1x9la_



not modelled 31.2 28
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:DR1885-like metal-binding protein
Family:DR1885-like metal-binding protein
52d1rp3a1



not modelled 30.7 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
53c2lj4A_



not modelled 30.6 36
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase/rotamase, putative;
PDBTitle: solution structure of the tbpin1
54c2kz3A_



not modelled 30.4 42
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein rad51l3;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83
55d1naqa_



not modelled 30.2 13
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
56c4e98C_



not modelled 30.2 14
PDB header:signaling protein
Chain: C: PDB Molecule:cuta1 divalent ion tolerance protein;
PDBTitle: crystal structure of possible cuta1 divalent ion tolerance protein2 from cryptosporidium parvum iowa ii
57d1o7ia_



not modelled 30.1 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
58d1kr4a_



not modelled 29.9 9
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
59c2kqaA_



not modelled 28.2 33
PDB header:toxin
Chain: A: PDB Molecule:cerato-platanin;
PDBTitle: the solution structure of the fungal elicitor cerato-platanin
60c3dm3A_



not modelled 27.5 26
PDB header:replication
Chain: A: PDB Molecule:replication factor a;
PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e
61c2nuhA_



not modelled 27.2 10
PDB header:unknown function
Chain: A: PDB Molecule:periplasmic divalent cation tolerance protein;
PDBTitle: crystal structure of cuta from the phytopathgen bacterium xylella2 fastidiosa
62d1mv8a1



not modelled 26.8 18
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
63c2rqsA_



not modelled 26.6 18
PDB header:isomerase
Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase;
PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin)
64c1f8aB_



not modelled 26.5 36
PDB header:isomerase
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-interacting 1;
PDBTitle: structural basis for the phosphoserine-proline recognition by group iv2 ww domains
65c2jzvA_



not modelled 26.3 18
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: solution structure of s. aureus prsa-ppiase
66c3e0mB_



not modelled 25.2 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb
67c5d1pB_



not modelled 24.9 23
PDB header:ligase
Chain: B: PDB Molecule:atp-dependent rna ligase;
PDBTitle: archaeal atp-dependent rna ligase - form 2
68c1zk6A_



not modelled 24.6 27
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: nmr solution structure of b. subtilis prsa ppiase
69d1wi9a_



not modelled 24.6 37
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PCI domain (PINT motif)
70c2l55A_



not modelled 23.8 40
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
71d1ku2a1



not modelled 23.7 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
72c3a35B_



not modelled 23.5 12
PDB header:luminescent protein
Chain: B: PDB Molecule:lumazine protein;
PDBTitle: crystal structure of lump complexed with riboflavin
73c2ropA_



not modelled 23.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of domains 3 and 4 of human atp7b
74c4owxB_



not modelled 23.3 27
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:soss complex subunit b1;
PDBTitle: structural basis of soss1 in complex with a 12nt ssdna
75c2kfuA_



not modelled 23.0 19
PDB header:protein binding
Chain: A: PDB Molecule:rv1827 pthr 22;
PDBTitle: pknb-phosphorylated rv1827
76c4tloB_



not modelled 23.0 21
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: alanine racemase from acinetobacter baumannii
77c4edfC_



not modelled 22.1 16
PDB header:oxidoreductase
Chain: C: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: dimeric hugdh, k94e
78d1j6ya_



not modelled 22.0 27
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
79c2q3eH_



not modelled 21.7 16
PDB header:oxidoreductase
Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose
80d2pv2a1



not modelled 21.7 18
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
81c5b8iB_



not modelled 21.5 9
PDB header:hydrolase
Chain: B: PDB Molecule:calcineurin subunit b, variant;
PDBTitle: crystal structure of calcineurin a and calcineurin b in complex with2 fkbp12 and fk506 from coccidioides immitis rs
82c3mlhA_



not modelled 21.3 38
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of the 2009 h1n1 influenza virus hemagglutinin2 receptor-binding domain
83c3m3gA_



not modelled 21.3 33
PDB header:polysaccharide-binding protein
Chain: A: PDB Molecule:epl1 protein;
PDBTitle: crystal structure of sm1, an elicitor of plant defence responses from2 trichoderma virens.
84c1pkvA_



not modelled 21.2 18
PDB header:transferase
Chain: A: PDB Molecule:riboflavin synthase alpha chain;
PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin
85c1pkvB_



not modelled 21.2 18
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase alpha chain;
PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin
86c5e50A_



not modelled 21.2 17
PDB header:lyase
Chain: A: PDB Molecule:aprataxin and pnk-like factor;
PDBTitle: aplf/xrcc4 complex
87c2lclA_



not modelled 21.0 35
PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator rfah;
PDBTitle: solution structure of rfah carboxyterminal domain
88c2k50A_



not modelled 20.8 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:replication factor a related protein;
PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a.
89c6ar2B_



not modelled 20.6 14
PDB header:membrane protein
Chain: B: PDB Molecule:sarcolemmal membrane-associated protein;
PDBTitle: structure of human slmap fha domain in complex with pmst2
90c2k75A_



not modelled 20.4 17
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein ta0387;
PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b.
91d1jsda_



not modelled 19.7 31
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
92c3sumA_



not modelled 19.6 14
PDB header:unknown function
Chain: A: PDB Molecule:cerato-platanin-like protein;
PDBTitle: crystal structure of cerato-platanin 5 from m. perniciosa (mpcp5)
93c4u9rA_



not modelled 19.4 33
PDB header:hydrolase
Chain: A: PDB Molecule:czcp cation efflux p1-atpase;
PDBTitle: structure of the n-terminal extension from cupriavidus metallidurans2 czcp
94c3gpkA_



not modelled 19.3 18
PDB header:isomerase
Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution.
95c2rmlA_



not modelled 19.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting p-type atpase copa;
PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa
96c2kkhA_



not modelled 19.2 15
PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4
97c3qqiB_



not modelled 19.2 23
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of the ha1 receptor binding domain of h22 hemagglutinin
98c2xwxB_



not modelled 19.2 38
PDB header:chitin-binding protein
Chain: B: PDB Molecule:glcnac-binding protein a;
PDBTitle: vibrio cholerae colonization factor gbpa crystal structure
99d3cnxa1



not modelled 19.1 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like

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