Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0265c_(-)_316511_317503
DateTue Jul 23 14:50:32 BST 2019
Unique Job IDea9855285d4cb94f
SequenceVRQGCSRRGF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:64.020 Y:46.833 Z:41.443
Model (left) based on template c4pm4B_
Top template information
PDB header:solute-binding protein
Chain: B: PDB Molecule:iron complex transporter substrate-binding protein;
PDBTitle: structure of a putative periplasmic iron siderophore binding protein2 (rv0265c) from mycobacterium tuberculosis h37rv
Confidence and coverage
Confidence:100.0% Coverage: 88%
289 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4pm4B_
100.0 100
PDB header:solute-binding protein
Chain: B: PDB Molecule:iron complex transporter substrate-binding protein;
PDBTitle: structure of a putative periplasmic iron siderophore binding protein2 (rv0265c) from mycobacterium tuberculosis h37rv
2c4mdyA_
100.0 64
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of periplasmic solute binding protein from2 mycobacterium smegmatis str. mc2 155
3c4h59A_
100.0 22
PDB header:transport protein
Chain: A: PDB Molecule:iron-compound abc transporter, iron compound-binding
PDBTitle: crystal structure of iron uptake abc transporter substrate-binding2 protein piaa from streptococcus pneumoniae canada mdr_19a bound to3 bis-tris propane
4c3eiwA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:htsa protein;
PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa
5c3tnyA_
100.0 20
PDB header:metal transport
Chain: A: PDB Molecule:yfiy (abc transport system substrate-binding protein);
PDBTitle: structure of yfiy from bacillus cereus bound to the siderophore iron2 (iii) schizokinen
6c5az3A_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:abc-type transporter, periplasmic component;
PDBTitle: crystal structure of heme binding protein hmut
7c4hn9B_
100.0 12
PDB header:transport protein
Chain: B: PDB Molecule:iron complex transport system substrate-binding protein;
PDBTitle: crystal structure of iron abc transporter solute-binding protein from2 eubacterium eligens
8c3tlkB_
100.0 19
PDB header:metal transport
Chain: B: PDB Molecule:ferrienterobactin-binding periplasmic protein;
PDBTitle: crystal structure of holo fepb
9c3gfvA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding protein
PDBTitle: crystal structure of petrobactin-binding protein yclq from bacillu2 subtilis
10c3r5tA_
100.0 20
PDB header:metal transport
Chain: A: PDB Molecule:ferric vibriobactin abc transporter, periplasmic ferric
PDBTitle: crystal structure of holo-viup
11c3tefA_
100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:iron(iii) abc transporter, periplasmic iron-compound-
PDBTitle: crystal structure of the periplasmic catecholate-siderophore binding2 protein vctp from vibrio cholerae
12d2chua1
100.0 15
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TM0189-like
13c3pshA_
100.0 16
PDB header:metal transport
Chain: A: PDB Molecule:protein hi_1472;
PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate)
14c6allB_
100.0 18
PDB header:metal transport
Chain: B: PDB Molecule:fe(3+)-citrate-binding protein yfmc;
PDBTitle: crystal structure of a predicted ferric/iron (iii) hydroxymate2 siderophore substrate binding protein from bacillus anthracis
15c5cr9A_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:abc-type fe3+-hydroxamate transport system, periplasmic
PDBTitle: crystal structure of abc-type fe3+-hydroxamate transport system from2 saccharomonospora viridis dsm 43017
16c6mflA_
100.0 22
PDB header:metal transport
Chain: A: PDB Molecule:baub;
PDBTitle: structure of siderophore binding protein baub bound to a complex2 between two molecules of acinetobactin and ferric iron.
17c4ovkA_
100.0 14
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of periplasmic solute binding protein from2 veillonella parvula dsm 2008
18c5dh0B_
100.0 17
PDB header:protein binding
Chain: B: PDB Molecule:siderophore periplasmic binding protein;
PDBTitle: structure of the siderophore periplasmic binding protein from the2 fuscachelin gene cluster of thermobifida fusca in p41
19c4mx8C_
100.0 14
PDB header:solute-binding protein
Chain: C: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of troa-like periplasmic binding protein2 peripla_bp_2 from xylanimonas cellulosilytica
20c4jccA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:iron-compound abc transporter, iron-compound-binding
PDBTitle: crystal structure of iron uptake abc transporter substrate-binding2 protein piua from streptococcus pneumoniae canada mdr_19a
21c5gj3A_
not modelled 100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: periplasmic heme-binding protein rhut from roseiflexus sp. rs-1 in2 two-heme bound form (holo-2)
22c4mlzB_
not modelled 100.0 16
PDB header:solute binding protein
Chain: B: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of periplasmic binding protein from jonesia2 denitrificans
23c4ljsA_
not modelled 100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: the crystal structure of a periplasmic binding protein from2 veillonella parvula dsm 2008
24c4pagA_
not modelled 100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: abc transporter solute binding protein from sulfurospirillum2 deleyianum dsm 6946
25c4b8yA_
not modelled 100.0 13
PDB header:transport protein/siderophore
Chain: A: PDB Molecule:fhud2;
PDBTitle: ferrichrome-bound fhud2
26c4inpA_
not modelled 100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:iron (iii) abc transporter, periplasmic iron-binding
PDBTitle: the crystal structure of helicobacter pylori ceue (hp1561) with ni(ii)2 bound
27c6b2xB_
not modelled 100.0 14
PDB header:metal transport
Chain: B: PDB Molecule:solute-binding periplasmic protein of iron/siderophore abc
PDBTitle: apo yiua crystal form 1
28c3be5D_
not modelled 100.0 19
PDB header:metal transport
Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter
PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein
29c4n01B_
not modelled 100.0 13
PDB header:transport protein
Chain: B: PDB Molecule:periplasmic binding protein;
PDBTitle: the crystal structure of a periplasmic binding protein from2 veillonella parvula dsm 2008
30c2phzA_
not modelled 100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:iron-uptake system-binding protein;
PDBTitle: crystal structure of iron-uptake system-binding protein feua from2 bacillus subtilis. northeast structural genomics target sr580.
31d2phza1
not modelled 100.0 14
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TM0189-like
32c2x4lA_
not modelled 100.0 13
PDB header:transport
Chain: A: PDB Molecule:ferric-siderophore receptor protein;
PDBTitle: crystal structure of dese, a ferric-siderophore receptor protein from2 streptomyces coelicolor
33c5ggxD_
not modelled 100.0 17
PDB header:transport protein
Chain: D: PDB Molecule:iron(iii) abc transporter, periplasmic iron-compound-
PDBTitle: crystal structure of fe3+ - desferal bound siderophore binding protein2 fhud from vibrio cholerae
34c5flyB_
not modelled 100.0 17
PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-binding periplasmic protein;
PDBTitle: the fhud protein from s.pseudintermedius
35c4mo9A_
not modelled 100.0 15
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of troa-like periplasmic binding protein fepb from2 veillonella parvula
36c5b58T_
not modelled 100.0 18
PDB header:metal binding protein
Chain: T: PDB Molecule:putative hemin transport system, substrate-binding protein;
PDBTitle: inward-facing conformation of abc heme importer bhuuv in complex with2 periplasmic heme binding protein bhut from burkholderia cenocepacia
37c4m7oA_
not modelled 100.0 13
PDB header:iron binding protein
Chain: A: PDB Molecule:iron-binding protein;
PDBTitle: the crystal structure of a possible an iron-binding (periplasmic2 solute-binding) protein from staphylococcus epidermidis atcc 12228.
38c5joqA_
not modelled 100.0 11
PDB header:hydrolase
Chain: A: PDB Molecule:lmo2184 protein;
PDBTitle: crystal structure of an abc transporter substrate-binding protein from2 listeria monocytogenes egd-e
39c2r79A_
not modelled 100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa
40d1esza_
not modelled 100.0 14
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Periplasmic ferric siderophore binding protein FhuD
41c5yscA_
not modelled 100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:vitamin b12-binding protein;
PDBTitle: crystal structure of periplasmic vitamin b12 binding protein btuf of2 vibrio cholerae
42c2r7aC_
not modelled 100.0 16
PDB header:transport protein
Chain: C: PDB Molecule:bacterial heme binding protein;
PDBTitle: crystal structure of a periplasmic heme binding protein from shigella2 dysenteriae
43c5khlB_
not modelled 100.0 18
PDB header:transport protein
Chain: B: PDB Molecule:hemin abc transporter, periplasmic hemin-binding protein
PDBTitle: crystal structure of periplasmic heme binding protein hutb of vibrio2 cholerae
44c3md9A_
not modelled 100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut;
PDBTitle: structure of apo form of a periplasmic heme binding protein
45c2q8pA_
not modelled 100.0 9
PDB header:metal transport
Chain: A: PDB Molecule:iron-regulated surface determinant e;
PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme
46c3g9qA_
not modelled 100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:ferrichrome-binding protein;
PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a
47c3mwgA_
not modelled 100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein
PDBTitle: crystal structure of staphylococcus aureus sira
48d1n2za_
not modelled 100.0 14
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like
49d2etva1
not modelled 100.0 9
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TM0189-like
50c5n6yD_
not modelled 93.6 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitrogenase vanadium-iron protein alpha chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
51c2ynmC_
not modelled 92.4 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
52c3aerC_
not modelled 90.6 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
53d1qh8a_
not modelled 87.3 13
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
54c5n6yE_
not modelled 86.7 12
PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrogenase vanadium-iron protein beta chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
55c3pdiG_
not modelled 86.5 15
PDB header:protein binding
Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife;
PDBTitle: precursor bound nifen
56c5vytD_
not modelled 85.4 16
PDB header:transferase
Chain: D: PDB Molecule:gdp-mannose 4,6-dehydratase / gdp-4-amino-4,6-dideoxy-d-
PDBTitle: crystal structure of the wbkc n-formyltransferase (f142a variant) from2 brucella melitensis
57c3pdiB_
not modelled 81.0 8
PDB header:protein binding
Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn;
PDBTitle: precursor bound nifen
58c2ov3A_
not modelled 78.7 15
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein component of an abc type zinc
PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc bound
59d1mioa_
not modelled 77.2 9
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
60d1m1na_
not modelled 75.5 11
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
61c3aoeC_
not modelled 66.3 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of hetero-hexameric glutamate dehydrogenase from2 thermus thermophilus (leu bound form)
62c2xdqA_
not modelled 59.8 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-chlb)2 complex
63c3aerB_
not modelled 59.7 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
64c5kojD_
not modelled 56.9 10
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitrogenase femo beta subunit protein nifk;
PDBTitle: nitrogenase mofep protein in the ids oxidized state
65c4rvgA_
not modelled 55.2 12
PDB header:transferase
Chain: A: PDB Molecule:d-mycarose 3-c-methyltransferase;
PDBTitle: crystal structure of mtmc in complex with sam and tdp
66d1pq4a_
not modelled 53.2 17
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like
67d1a9xb2
not modelled 52.5 27
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
68d1qh8b_
not modelled 52.3 10
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
69c2ynmD_
not modelled 52.2 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
70d1miob_
not modelled 51.1 6
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
71c2e76D_
not modelled 48.2 25
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
72c1z7eC_
not modelled 38.3 25
PDB header:hydrolase
Chain: C: PDB Molecule:protein arna;
PDBTitle: crystal structure of full length arna
73c5uyvA_
not modelled 37.4 15
PDB header:metal transport
Chain: A: PDB Molecule:periplasmic chelated iron-binding protein yfea;
PDBTitle: yfea ancillary sites that do not co-load with site 2
74c2yxbA_
not modelled 36.3 17
PDB header:isomerase
Chain: A: PDB Molecule:coenzyme b12-dependent mutase;
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
75c1keeH_
not modelled 36.3 28
PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
76d1fmta2
not modelled 35.1 16
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
77c2fynO_
not modelled 32.6 35
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
78d1zgha2
not modelled 29.9 5
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
79c4cl2A_
not modelled 25.8 11
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic solute binding protein;
PDBTitle: structure of periplasmic metal binding protein from candidatus2 liberibacter asiaticus
80c2z4dA_
not modelled 25.5 7
PDB header:nuclear protein
Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn13;
PDBTitle: nmr structures of yeast proteasome component rpn13
81c2g04B_
not modelled 24.5 21
PDB header:isomerase
Chain: B: PDB Molecule:probable fatty-acid-coa racemase far;
PDBTitle: crystal structure of fatty acid-coa racemase from mycobacterium2 tuberculosis h37rv
82d1xk7a1
not modelled 23.9 22
Fold:CoA-transferase family III (CaiB/BaiF)
Superfamily:CoA-transferase family III (CaiB/BaiF)
Family:CoA-transferase family III (CaiB/BaiF)
83d1q3qa2
not modelled 22.6 16
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
84c1p84E_
not modelled 22.3 16
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
85d2blna2
not modelled 21.7 23
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
86c2fyuE_
not modelled 21.3 24
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
87c4b4tX_
not modelled 21.2 7
PDB header:hydrolase
Chain: X: PDB Molecule:26s proteasome regulatory subunit rpn13;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
88d1x74a1
not modelled 21.2 22
Fold:CoA-transferase family III (CaiB/BaiF)
Superfamily:CoA-transferase family III (CaiB/BaiF)
Family:CoA-transferase family III (CaiB/BaiF)
89d1gmla_
not modelled 20.8 23
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
90c2z59A_
not modelled 20.3 7
PDB header:protein transport
Chain: A: PDB Molecule:protein adrm1;
PDBTitle: complex structures of mouse rpn13 (22-130aa) and ubiquitin
91c2r2yA_
not modelled 20.1 7
PDB header:protein binding
Chain: A: PDB Molecule:protein adrm1;
PDBTitle: crystal structure of the proteasomal rpn13 pru-domain
92c2xdqB_
not modelled 19.9 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-chlb)2 complex
93c3cq9C_
not modelled 19.6 15
PDB header:transferase
Chain: C: PDB Molecule:uncharacterized protein lp_1622;
PDBTitle: crystal structure of the lp_1622 protein from lactobacillus plantarum.2 northeast structural genomics consortium target lpr114
94c3dc7B_
not modelled 18.8 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein lp_3323;
PDBTitle: crystal structure of the protein q88sr8 from lactobacillus plantarum.2 northeast structural genomics consortium target lpr109.
95c3rfoA_
not modelled 18.4 23
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis
96d1assa_
not modelled 18.3 13
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
97c2kr0A_
not modelled 18.2 7
PDB header:protein binding
Chain: A: PDB Molecule:proteasomal ubiquitin receptor adrm1;
PDBTitle: solution structure of the proteasome ubiquitin receptor rpn13
98c2r8rB_
not modelled 18.0 23
PDB header:transferase
Chain: B: PDB Molecule:sensor protein;
PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000
99c5yx6D_
not modelled 17.3 18
PDB header:transferase
Chain: D: PDB Molecule:uncharacterized protein rv3272;
PDBTitle: crystal structure of rv3272 from m. tuberculosis orthorhombic form

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