Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0267_(narU)_321331_322722
DateTue Jul 23 14:50:33 BST 2019
Unique Job ID5f256144a3d6e7c1
SequenceMALTTAPAID ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.001 Y:67.867 Z:71.931
Model (left) based on template c4iu8A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
Confidence and coverage
Confidence:100.0% Coverage: 90%
418 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4iu8A_
100.0 33
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
2c4iu9A_
100.0 34
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
3c6e9oA_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
4d1pw4a_
100.0 12
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
5c4zp0A_
100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:multidrug transporter mdfa;
PDBTitle: crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
6c6h7dA_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:sugar transport protein 10;
PDBTitle: crystal structure of a. thaliana sugar transport protein 10 in complex2 with glucose in the outward occluded state
7c4ldsB_
100.0 12
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:bicyclomycin resistance protein tcab;
PDBTitle: the inward-facing structure of the glucose transporter from2 staphylococcus epidermidis
8c3wdoA_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
9c6g9xB_
100.0 13
PDB header:membrane protein
Chain: B: PDB Molecule:major facilitator superfamily mfs_1;
PDBTitle: crystal structure of a mfs transporter at 2.54 angstroem resolution
10c4ybqB_
100.0 12
PDB header:transport protein/immune system
Chain: B: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: rat glut5 with fv in the outward-open form
11c4j05A_
100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:phosphate transporter;
PDBTitle: crystal structure of a eukaryotic phosphate transporter
12c4cl5B_
100.0 13
PDB header:transport protein
Chain: B: PDB Molecule:nitrate transporter 1.1;
PDBTitle: crystal structure of the nitrate transporter nrt1.1 from2 arabidopsis thaliana in complex with nitrate.
13c5c65A_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: structure of the human glucose transporter glut3 / slc2a3
14c6exsA_
100.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:peptide abc transporter permease;
PDBTitle: crystal structure of a pot family transporter in complex with2 thioalcohol conjugated peptide.
15c3o7pA_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
16c4ikyA_
100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
17c4w6vA_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:di-/tripeptide transporter;
PDBTitle: crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
18c6gs7A_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:dipeptide and tripeptide permease a;
PDBTitle: crystal structure of peptide transporter dtpa-nanobody in glycine2 buffer
19c6ei3A_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:proton-dependent oligopeptide transporter family protein;
PDBTitle: crystal structure of auto inhibited pot family peptide transporter
20c4apsB_
100.0 8
PDB header:transport protein
Chain: B: PDB Molecule:di-or tripeptide h+ symporter;
PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation.
21d1pv7a_
not modelled 99.9 8
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:LacY-like proton/sugar symporter
22c1pv7B_
not modelled 99.9 8
PDB header:transport protein
Chain: B: PDB Molecule:lactose permease;
PDBTitle: crystal structure of lactose permease with tdg
23c4pypA_
not modelled 99.9 11
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: crystal structure of the human glucose transporter glut1
24c2gfpA_
not modelled 99.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
25c4q65A_
not modelled 99.9 12
PDB header:transport protein
Chain: A: PDB Molecule:dipeptide permease d;
PDBTitle: structure of the e. coli peptide transporter ybgh
26c2xutC_
not modelled 99.9 11
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot) family2 transporter.
27c4lepB_
not modelled 99.9 8
PDB header:membrane protein, tranport protein
Chain: B: PDB Molecule:proton:oligopeptide symporter pot family;
PDBTitle: structural insights into substrate recognition in proton dependent2 oligopeptide transporters
28c4gbzA_
not modelled 99.9 14
PDB header:transport protein
Chain: A: PDB Molecule:d-xylose-proton symporter;
PDBTitle: the structure of the mfs (major facilitator superfamily) proton:xylose2 symporter xyle bound to d-glucose
29c5aynA_
not modelled 99.9 9
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
30c5aymA_
not modelled 99.8 9
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron
31c4m64D_
not modelled 99.7 12
PDB header:transport protein
Chain: D: PDB Molecule:melibiose carrier protein;
PDBTitle: 3d crystal structure of na+/melibiose symporter of salmonella2 typhimurium
32c6ob7A_
not modelled 99.5 10
PDB header:transport protein
Chain: A: PDB Molecule:equilibrative nucleoside transporter 1;
PDBTitle: human equilibrative nucleoside transporter-1, dilazep bound
33c6cc4A_
not modelled 38.3 7
PDB header:transport protein
Chain: A: PDB Molecule:soluble cytochrome b562, lipid ii flippase murj chimera;
PDBTitle: structure of murj from escherichia coli
34c5m73H_
not modelled 31.5 30
PDB header:rna binding protein
Chain: H: PDB Molecule:signal recognition particle subunit srp72;
PDBTitle: structure of the human srp s domain with srp72 rna-binding domain
35c6en3A_
not modelled 26.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase f2,multifunctional-
PDBTitle: crystal structure of full length endos from streptococcus pyogenes in2 complex with g2 oligosaccharide.
36c4r0cB_
not modelled 26.3 12
PDB header:membrane protein
Chain: B: PDB Molecule:abgt putative transporter family;
PDBTitle: crystal structure of the alcanivorax borkumensis ydah transporter2 reveals an unusual topology
37d1y60a_
not modelled 23.8 21
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Formaldehyde-activating enzyme, FAE
38c6r8fG_
not modelled 20.6 22
PDB header:signaling protein
Chain: G: PDB Molecule:brisc and brca1-a complex member 2,brcc45 (bre, brisc and
PDBTitle: cryo-em structure of the human brisc-shmt2 complex
39c6r8fE_
not modelled 20.6 22
PDB header:signaling protein
Chain: E: PDB Molecule:brisc and brca1-a complex member 2,brcc45 (bre, brisc and
PDBTitle: cryo-em structure of the human brisc-shmt2 complex
40c3p4rM_
not modelled 19.2 30
PDB header:oxidoreductase
Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit;
PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate
41c1yr2A_
not modelled 16.8 28
PDB header:hydrolase
Chain: A: PDB Molecule:prolyl oligopeptidase;
PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity
42d2hg7a1
not modelled 16.6 15
Fold:gpW/XkdW-like
Superfamily:XkdW-like
Family:XkdW-like
43c2hg7A_
not modelled 16.6 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phage-like element pbsx protein xkdw;
PDBTitle: solution nmr structure of phage-like element pbsx protein2 xkdw, northeast structural genomics consortium target sr355
44c6b9mC_
not modelled 16.2 29
PDB header:transferase
Chain: C: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of uhrf1 ttd domain in complex with the polybasic2 region
45d1sv0c_
not modelled 15.7 27
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
46d1tqza1
not modelled 15.6 23
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Necap1 N-terminal domain-like
47c2g9pA_
not modelled 15.5 21
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
48c1kf6A_
not modelled 14.7 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase flavoprotein;
PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
49c3db3A_
not modelled 14.3 14
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the tandem tudor domains of the e3 ubiquitin-2 protein ligase uhrf1 in complex with trimethylated histone h3-k93 peptide
50c3vvpA_
not modelled 14.1 10
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of mate in complex with br-nrf
51d1vqqa1
not modelled 13.8 29
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
52c5uw7B_
not modelled 13.6 15
PDB header:lyase
Chain: B: PDB Molecule:peptide cyclase 1;
PDBTitle: pcy1 y481f variant in complex with follower peptide
53c4hvtA_
not modelled 13.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:post-proline cleaving enzyme;
PDBTitle: structure of a post-proline cleaving enzyme from rickettsia typhi
54d1sxda_
not modelled 13.4 50
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
55c4mhvB_
not modelled 13.1 30
PDB header:transcription
Chain: B: PDB Molecule:protein c-ets-2;
PDBTitle: crystal structure of the pnt domain of human ets2
56c3askC_
not modelled 12.8 14
PDB header:ligase/dna binding protein
Chain: C: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: structure of uhrf1 in complex with histone tail
57d1fe8h2
not modelled 12.6 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
58c5azdA_
not modelled 12.1 10
PDB header:transport protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of thermophilic rhodopsin.
59c2l92A_
not modelled 11.7 29
PDB header:dna binding protein
Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns;
PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f
60c6gjeA_
not modelled 11.5 11
PDB header:protein transport
Chain: A: PDB Molecule:protein amnionless;
PDBTitle: structure of the amnionless(20-357)-cubilin(36-135) complex
61c3jcuz_
not modelled 10.5 15
PDB header:membrane protein
Chain: Z: PDB Molecule:photosystem ii reaction center protein z;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
62c2yvxD_
not modelled 10.2 8
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
63c6oh2A_
not modelled 10.1 10
PDB header:transport protein
Chain: A: PDB Molecule:cmp-sialic acid transporter;
PDBTitle: x-ray crystal structure of the mouse cmp-sialic acid transporter in2 complex with cmp, by lipidic cubic phase
64d2axtz1
not modelled 10.0 16
Fold:Transmembrane helix hairpin
Superfamily:PsbZ-like
Family:PsbZ-like
65c6bx3N_
not modelled 9.9 35
PDB header:gene regulation/transferase
Chain: N: PDB Molecule:compass component sdc1;
PDBTitle: structure of histone h3k4 methyltransferase
66c2rqmA_
not modelled 9.9 12
PDB header:chaperone
Chain: A: PDB Molecule:mesoderm development candidate 2;
PDBTitle: nmr solution structure of mesoderm development (mesd) - open2 conformation
67c2e8pA_
not modelled 9.7 21
PDB header:signaling protein
Chain: A: PDB Molecule:elf3 protein;
PDBTitle: solution structure of the n-terminal sam-domain of e74-like2 factor 3
68d1sv0a_
not modelled 9.6 40
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
69c4tvrA_
not modelled 9.6 19
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf2;
PDBTitle: tandem tudor and phd domains of uhrf2
70d1kf6a1
not modelled 8.9 30
Fold:Spectrin repeat-like
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
71c6b9tH_
not modelled 8.6 27
PDB header:oxidoreductase
Chain: H: PDB Molecule:methylphosphonate synthase;
PDBTitle: crystal structure of mpns with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
72c5n4dA_
not modelled 8.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:prolyl oligopeptidase;
PDBTitle: prolyl oligopeptidase b from galerina marginata bound to 25mer2 macrocyclization substrate - d661a mutant
73c5uzwD_
not modelled 8.3 15
PDB header:lyase
Chain: D: PDB Molecule:peptide cyclase 1;
PDBTitle: pcy1 g696insertion variant in complex with follower peptide and the2 covalent inhibitor zpp
74d1ji7a_
not modelled 8.2 20
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
75c3hftA_
not modelled 8.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:wbms, polysaccharide deacetylase involved in o-antigen
PDBTitle: crystal structure of a putative polysaccharide deacetylase involved in2 o-antigen biosynthesis (wbms, bb0128) from bordetella bronchiseptica3 at 1.90 a resolution
76d1sxea_
not modelled 7.8 50
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
77c5fjqB_
not modelled 7.8 18
PDB header:sugar binding protein
Chain: B: PDB Molecule:carbohydrate binding protein, putative, cpb33a;
PDBTitle: structural and functional analysis of a lytic2 polysaccharide monooxygenase important for efficient3 utilization of chitin in cellvibrio japonicus
78c6if7A_
not modelled 7.7 27
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitin binding protein;
PDBTitle: crystal structure of aa10 lytic polysaccharide monooxygenase from2 tectaria macrodonta
79d1bcoa1
not modelled 7.6 10
Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
80c6h3cC_
not modelled 7.5 20
PDB header:signaling protein
Chain: C: PDB Molecule:brisc and brca1-a complex member 2;
PDBTitle: cryo-em structure of the brisc complex bound to shmt2
81d1jz8a1
not modelled 7.5 50
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
82c4k1cB_
not modelled 7.4 10
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
83c4gy5A_
not modelled 7.4 17
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the tandem tudor domain and plant homeodomain of2 uhrf1 with histone h3k9me3
84c3mkuB_
not modelled 7.3 8
PDB header:transport protein
Chain: B: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
85d1sm3h2
not modelled 7.2 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
86c2yowB_
not modelled 7.2 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:rbam17540;
PDBTitle: bacillus amyloliquefaciens cbm33
87d1wmib1
not modelled 7.2 31
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:RelB-like
Family:RelB-like
88c4k1cA_
not modelled 7.1 10
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
89c4luqB_
not modelled 7.1 15
PDB header:protein binding/toxin inhibitor
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of virulence effector tse3 in complex with2 neutralizer tsi3
90d1ji8a_
not modelled 7.1 11
Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase
Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase
Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
91c5lw4A_
not modelled 7.1 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative chitin binding protein;
PDBTitle: nmr solution structure of the chitin-active lytic polysaccharide2 monooxygenase bllpmo10a
92d1lk3h2
not modelled 7.1 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
93c3hfxA_
not modelled 7.0 3
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
94c3uamD_
not modelled 7.0 9
PDB header:protein binding
Chain: D: PDB Molecule:chitin binding domain;
PDBTitle: crystal structure of a chitin binding domain from burkholderia2 pseudomallei
95c4bbaA_
not modelled 7.0 12
PDB header:protein-binding protein
Chain: A: PDB Molecule:glucokinase regulatory protein;
PDBTitle: crystal structure of glucokinase regulatory protein complexed to2 phosphate
96d2bema_
not modelled 6.9 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
97c2bklB_
not modelled 6.9 20
PDB header:hydrolase
Chain: B: PDB Molecule:prolyl endopeptidase;
PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity
98c2dkxA_
not modelled 6.8 15
PDB header:signaling protein
Chain: A: PDB Molecule:sam pointed domain-containing ets transcription
PDBTitle: solution structure of the sam_pnt-domain of ets2 transcription factor pdef (prostate ets)
99c2gleA_
not modelled 6.8 20
PDB header:protein binding
Chain: A: PDB Molecule:neurabin-1;
PDBTitle: solution structure of neurabin sam domain

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