Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0268c_(-)_322764_323273
DateTue Jul 23 14:50:33 BST 2019
Unique Job ID9daf0e4ff7338876
SequenceVGTRSKSRTR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.310 Y:29.544 Z:66.984
Model (left) based on template c3g5oA_
Top template information
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
Confidence and coverage
Confidence: 99.6% Coverage: 46%
78 residues ( 46% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3g5oA_



99.6 31
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
2c3oeiB_



99.4 26
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
3c2odkD_



99.4 16
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
4d2odka1



99.3 17
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
5d2a6qb1



99.2 29
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3hs2H_



99.2 24
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
7d2a6qa1



99.2 28
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
8c3hryA_



99.1 23
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
9c3d55A_



98.9 26
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
10c3k6qB_



91.0 16
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c1lvaA_



63.0 14
PDB header:translation
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of a c-terminal fragment of moorella2 thermoacetica elongation factor selb
12c4g6vE_



54.2 13
PDB header:toxin
Chain: E: PDB Molecule:adhesin/hemolysin;
PDBTitle: cdia-ct/cdii toxin and immunity complex from burkholderia pseudomallei
13c6nkoA_



43.1 17
PDB header:unknown function
Chain: A: PDB Molecule:forh;
PDBTitle: crystal structure of forh
14d1g8ma1



41.9 13
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
15d1pkxa1



40.6 13
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
16c2v9vA_



37.6 14
PDB header:transcription
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of moorella thermoacetica selb(377-511)
17c3kzqE_



35.8 13
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:putative uncharacterized protein vp2116;
PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633
18d2hfda1



29.3 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:HyaE-like
19c3lciA_



28.9 11
PDB header:lyase
Chain: A: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: the d-sialic acid aldolase mutant v251w
20d1m9dc_



28.7 17
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
21c4iapB_



not modelled 27.2 21
PDB header:lipid binding protein/ hydrorase
Chain: B: PDB Molecule:oxysterol-binding protein homolog 3,endolysin,oxysterol-
PDBTitle: crystal structure of ph domain of osh3 from saccharomyces cerevisiae
22d1hl2a_



not modelled 27.2 11
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
23c3zbeA_



not modelled 27.2 15
PDB header:toxin-antitoxin
Chain: A: PDB Molecule:paaa2;
PDBTitle: e. coli o157 pare2-associated antitoxin 2 (paaa2)
24c5b42A_



not modelled 27.1 29
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: crystal structure of the c-terminal endonuclease domain of aquifex2 aeolicus mutl.
25c5c54D_



not modelled 27.0 9
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase/n-acetylneuraminate lyase;
PDBTitle: crystal structure of a novel n-acetylneuraminic acid lyase from2 corynebacterium glutamicum
26c3bpqA_



not modelled 25.5 24
PDB header:toxin
Chain: A: PDB Molecule:antitoxin relb3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
27c2w1tB_



not modelled 25.3 11
PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: crystal structure of b. subtilis spovt
28c4a1oB_



not modelled 23.0 17
PDB header:transferase-hydrolase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of mycobacterium tuberculosis purh complexed with2 aicar and a novel nucleotide cfair, at 2.48 a resolution.
29c3gabC_



not modelled 22.8 41
PDB header:hydrolase
Chain: C: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: c-terminal domain of bacillus subtilis mutl crystal form i
30c1thzA_



not modelled 22.5 13
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of avian aicar transformylase in complex2 with a novel inhibitor identified by virtual ligand3 screening
31c3mk7B_



not modelled 21.9 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o;
PDBTitle: the structure of cbb3 cytochrome oxidase
32c3gnjD_



not modelled 21.9 7
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:thioredoxin domain protein;
PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb
33d1zcza1



not modelled 20.8 6
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
34c2o8xA_



not modelled 20.6 15
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
35d2pxrc1



not modelled 20.4 17
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
36c4ehiB_



not modelled 20.0 22
PDB header:hydrolase,transferase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: an x-ray crystal structure of a putative bifunctional2 phosphoribosylaminoimidazolecarboxamide formyltransferase/imp3 cyclohydrolase
37c3msqC_



not modelled 19.1 23
PDB header:biosynthetic protein
Chain: C: PDB Molecule:putative ubiquinone biosynthesis protein;
PDBTitle: crystal structure of a putative ubiquinone biosynthesis protein2 (npun02000094) from nostoc punctiforme pcc 73102 at 2.85 a resolution
38c3cynC_



not modelled 19.0 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:probable glutathione peroxidase 8;
PDBTitle: the structure of human gpx8
39c1v98A_



not modelled 17.4 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus
40c3bpqC_



not modelled 17.0 26
PDB header:toxin
Chain: C: PDB Molecule:antitoxin relb3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
41c2m4hA_



not modelled 16.2 17
PDB header:viral protein
Chain: A: PDB Molecule:feline calicivirus vpg protein;
PDBTitle: solution structure of the core domain (10-76) of the feline2 calicivirus vpg protein
42c2qsiB_



not modelled 15.8 7
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
43d1o9ya_



not modelled 15.8 11
Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
44c3kb4D_



not modelled 15.7 33
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr8543 protein;
PDBTitle: crystal structure of the alr8543 protein in complex with2 geranylgeranyl monophosphate and magnesium ion from nostoc sp. pcc3 7120, northeast structural genomics consortium target nsr141
45c4tt9A_



not modelled 15.5 13
PDB header:protein transport
Chain: A: PDB Molecule:surface presentation of antigens protein spao;
PDBTitle: structure of the c-terminal spoa domain of shigella flexneri spa33
46d1or7a1



not modelled 15.4 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
47c3ncvB_



not modelled 14.9 29
PDB header:hydrolase
Chain: B: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: ngol
48d1pcfa_



not modelled 14.6 25
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:Transcriptional coactivator PC4 C-terminal domain
49c4pa5A_



not modelled 14.0 20
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: tgl - a bacterial spore coat transglutaminase - cystamine complex
50c6ghbB_



not modelled 13.9 23
PDB header:protein binding
Chain: B: PDB Molecule:upf0413 protein gk0824;
PDBTitle: crystal structure of spx in complex with yjbh (oxidized)
51c4aghA_



not modelled 13.7 12
PDB header:transcription
Chain: A: PDB Molecule:mosub1, transcription cofactor;
PDBTitle: structural features of ssdna binding protein mosub1 from magnaporthe2 oryzae
52d1ta8a_



not modelled 13.7 17
Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
53c3nojA_



not modelled 13.6 9
PDB header:lyase
Chain: A: PDB Molecule:4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate
PDBTitle: the structure of hmg/cha aldolase from the protocatechuate degradation2 pathway of pseudomonas putida
54c3noeA_



not modelled 13.5 18
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa
55c4evmA_



not modelled 13.5 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin family protein;
PDBTitle: 1.5 angstrom crystal structure of soluble domain of membrane-anchored2 thioredoxin family protein from streptococcus pneumoniae strain3 canada mdr_19a
56c5ngwA_



not modelled 13.5 6
PDB header:hydrolase
Chain: A: PDB Molecule:opgh99a;
PDBTitle: glycoside hydrolase-like protein
57c3vepA_



not modelled 12.8 28
PDB header:membrane protein/transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-d factor;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
58c5ktlA_



not modelled 12.7 20
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-tetrahydrodipicolinate synthase;
PDBTitle: dihydrodipicolinate synthase from the industrial and evolutionarily2 important cyanobacteria anabaena variabilis.
59c5a4nB_



not modelled 12.7 20
PDB header:dna binding protein
Chain: B: PDB Molecule:bpsl1147;
PDBTitle: crystal structure of bpsl1147, a pc4 homolog from burkholderia2 pseudomallei k96243 (tetragonal crystal form)
60c1l6nA_



not modelled 12.6 17
PDB header:viral protein
Chain: A: PDB Molecule:gag polyprotein;
PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein
61c1n0fF_



not modelled 12.5 9
PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif
62d2j7pe1



not modelled 12.4 26
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
63c5by3A_



not modelled 12.2 29
PDB header:sugar binding protein
Chain: A: PDB Molecule:btgh115a;
PDBTitle: a novel family gh115 4-o-methyl-alpha-glucuronidase, btgh115a, with2 specificity for decorated arabinogalactans
64c3pueA_



not modelled 12.2 15
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution
65c2kucA_



not modelled 12.1 17
PDB header:isomerase
Chain: A: PDB Molecule:putative disulphide-isomerase;
PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron
66d1nw2a_



not modelled 11.8 31
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
67c3g0sA_



not modelled 11.8 20
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2
68c2hyiJ_



not modelled 11.6 35
PDB header:hydrolase/rna binding protein/rna
Chain: J: PDB Molecule:protein casc3;
PDBTitle: structure of the human exon junction complex with a trapped2 dead-box helicase bound to rna
69c3ex7I_



not modelled 11.5 35
PDB header:hydrolase/rna binding protein/rna
Chain: I: PDB Molecule:protein casc3;
PDBTitle: the crystal structure of ejc in its transition state
70c3cuoB_



not modelled 11.5 17
PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
71d1j93a_



not modelled 11.5 18
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Uroporphyrinogen decarboxylase, UROD
72d2ns0a1



not modelled 11.4 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
73d7mdha2



not modelled 11.2 11
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
74c4ph6A_



not modelled 11.2 16
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: structure of 3-dehydroquinate dehydratase from enterococcus faecalis
75c3ihjA_



not modelled 10.9 12
PDB header:transferase
Chain: A: PDB Molecule:alanine aminotransferase 2;
PDBTitle: human alanine aminotransferase 2 in complex with plp
76c3ul3A_



not modelled 10.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: structural insights into thioredoxin-2: a component of malaria2 parasite protein secretion machinery
77c3qdnA_



not modelled 10.6 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin protein;
PDBTitle: putative thioredoxin protein from salmonella typhimurium
78c2x8qA_



not modelled 10.6 21
PDB header:virus
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: cryo-em 3d model of the icosahedral particle composed of rous sarcoma2 virus capsid protein pentamers
79d1rj9a1



not modelled 10.6 26
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
80c4yxaB_



not modelled 10.6 18
PDB header:protein transport
Chain: B: PDB Molecule:surface presentation of antigens protein spao;
PDBTitle: complex of spao(spoa1,2 semet) and orgb(apar)::t4lysozyme fusion2 protein
81d1n0ea_



not modelled 10.6 9
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Hypothetical protein MraZ
82c4e6zA_



not modelled 10.5 4
PDB header:transport protein
Chain: A: PDB Molecule:apicoplast tic22, putative;
PDBTitle: tic22 from plasmodium falciparum
83c3erwG_



not modelled 10.4 26
PDB header:oxidoreductase
Chain: G: PDB Molecule:sporulation thiol-disulfide oxidoreductase a;
PDBTitle: crystal structure of stoa from bacillus subtilis
84d2isya1



not modelled 10.3 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
85c3feuA_



not modelled 10.2 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri
86c3razA_



not modelled 10.1 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-related protein;
PDBTitle: the crystal structure of thioredoxin-related protein from neisseria2 meningitidis serogroup b
87c2w7nA_



not modelled 10.1 15
PDB header:transcription/dna
Chain: A: PDB Molecule:trfb transcriptional repressor protein;
PDBTitle: crystal structure of kora bound to operator dna: insight into2 repressor cooperation in rp4 gene regulation
88c2mwqA_



not modelled 9.9 16
PDB header:plant protein
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 3, chloroplastic;
PDBTitle: solution structure of psbq from spinacia oleracea
89c1nzeA_



not modelled 9.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 3;
PDBTitle: crystal structure of psbq polypeptide of photosystem ii2 from higher plants
90d1nzea_



not modelled 9.9 16
Fold:Four-helical up-and-down bundle
Superfamily:Oxygen-evolving enhancer protein 3,
Family:Oxygen-evolving enhancer protein 3,
91c3fggA_



not modelled 9.8 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bce2196;
PDBTitle: crystal structure of putative ecf-type sigma factor negative effector2 from bacillus cereus
92d2dcfa1



not modelled 9.8 13
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
93d2fug51



not modelled 9.8 18
Fold:Nqo5-like
Superfamily:Nqo5-like
Family:Nqo5-like
94c3t72o_



not modelled 9.7 26
PDB header:transcription/dna
Chain: O: PDB Molecule:pho box dna (strand 1);
PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
95c5j9uG_



not modelled 9.6 14
PDB header:transferase
Chain: G: PDB Molecule:enhancer of polycomb-like protein 1;
PDBTitle: crystal structure of the nua4 core complex
96c1qysA_



not modelled 9.6 24
PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
97c3vufA_



not modelled 9.6 12
PDB header:transferase
Chain: A: PDB Molecule:granule-bound starch synthase 1,
PDBTitle: crystal structure of rice granule bound starch synthase i catalytic2 domain in complex with adp
98c1t00A_



not modelled 9.6 21
PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: the structure of thioredoxin from s. coelicolor
99d1knga_



not modelled 9.5 15
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like

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