Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0276_(-)_331748_332668
DateTue Jul 23 14:50:34 BST 2019
Unique Job IDb7fb45521f60ba7e
SequenceMAISLVAHQP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.014 Y:53.140 Z:54.491
Model (left) based on template c5o1mA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
Confidence and coverage
Confidence: 99.1% Coverage: 73%
224 residues ( 73% of your sequence) have been modelled with 99.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o1mA_



99.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
2c1unhD_



34.9 13
PDB header:cell cycle
Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1;
PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin.
3d1unld_



33.5 15
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
4c3wkgA_



27.1 14
PDB header:isomerase
Chain: A: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: crystal structure of cellobiose 2-epimerase in complex with2 glucosylmannose
5d1nb4a_



26.6 7
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
6c2ru8A_



26.6 13
PDB header:replication
Chain: A: PDB Molecule:primosomal protein 1;
PDBTitle: dnat c-terminal domain
7c2vh3B_



22.0 20
PDB header:unknown function
Chain: B: PDB Molecule:ranasmurfin;
PDBTitle: ranasmurfin
8d1u5ta1



19.2 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
9c4z4lA_



18.9 14
PDB header:isomerase
Chain: A: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: crystal structure of cellobiose 2-epimerase from caldicellulosiruptor2 saccharolyticus dsm 8903
10c5cuvB_



17.4 5
PDB header:metal binding protein
Chain: B: PDB Molecule:acidocalcisomal pyrophosphatase;
PDBTitle: crystal structure of trypanosoma cruzi vacuolar soluble2 pyrophosphatases in apo form
11c6alyA_



15.8 6
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 15;
PDBTitle: solution structure of yeast med15 abd2 residues 277-368
12c3m20A_



15.0 3
PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
13c4ou6A_



13.7 13
PDB header:replication/dna
Chain: A: PDB Molecule:primosomal protein 1;
PDBTitle: crystal structure of dnat84-153-dt10 ssdna complex form 1
14d1v7ba2



13.4 10
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
15d1g73a_



12.7 25
Fold:Spectrin repeat-like
Superfamily:Smac/diablo
Family:Smac/diablo
16c3s6jC_



11.5 3
PDB header:hydrolase
Chain: C: PDB Molecule:hydrolase, haloacid dehalogenase-like family;
PDBTitle: the crystal structure of a hydrolase from pseudomonas syringae
17c5zhbB_



11.5 14
PDB header:isomerase
Chain: B: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: structure of cellobiose 2-epimerase from bacillus thermoamylovorans2 b4167
18d16vpa_



11.4 33
Fold:Conserved core of transcriptional regulatory protein vp16
Superfamily:Conserved core of transcriptional regulatory protein vp16
Family:Conserved core of transcriptional regulatory protein vp16
19d1gyxa_



10.5 13
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
20c3mb2J_



10.4 10
PDB header:isomerase
Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
21d1gx5a_



not modelled 10.0 5
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
22d1x9na1



not modelled 10.0 19
Fold:ATP-dependent DNA ligase DNA-binding domain
Superfamily:ATP-dependent DNA ligase DNA-binding domain
Family:ATP-dependent DNA ligase DNA-binding domain
23c4zvbD_



not modelled 9.8 18
PDB header:signaling protein
Chain: D: PDB Molecule:diguanylate cyclase dosc;
PDBTitle: crystal structure of globin domain of the e. coli dosc - form ii2 (ferrous)
24d1lj8a3



not modelled 9.7 13
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Mannitol 2-dehydrogenase
25c2e8mA_



not modelled 9.4 12
PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
26c1nexC_



not modelled 9.3 9
PDB header:ligase, cell cycle
Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3
PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
27c4xboA_



not modelled 8.6 12
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of full length e.coli trmj in complex with sah
28c4lkbA_



not modelled 8.6 6
PDB header:isomerase
Chain: A: PDB Molecule:hypothetical protein alr4568/putative 4-oxalocrotonate
PDBTitle: crystal structure of a putative 4-oxalocrotonate tautomerase from2 nostoc sp. pcc 7120
29c4ockA_



not modelled 8.3 13
PDB header:transferase
Chain: A: PDB Molecule:n-acetylhexosamine 1-phosphate kinase;
PDBTitle: n-acetylhexosamine 1-phosphate kinase in complex with glcnac and2 amppnp
30c4fdxB_



not modelled 8.1 23
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
31d1fewa_



not modelled 7.9 25
Fold:Spectrin repeat-like
Superfamily:Smac/diablo
Family:Smac/diablo
32c4nk1B_



not modelled 7.5 12
PDB header:oxygen binding
Chain: B: PDB Molecule:hemoglobin-like protein;
PDBTitle: crystal structure of phosphate-bound hell's gate globin iv
33d2fd5a2



not modelled 7.3 14
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
34c6ogdB_



not modelled 7.1 14
PDB header:toxin
Chain: B: PDB Molecule:toxin subunit yena2;
PDBTitle: cryo-em structure of yentca in its prepore state
35c6e1jB_



not modelled 7.0 12
PDB header:plant protein
Chain: B: PDB Molecule:2-isopropylmalate synthase, a genome specific 1;
PDBTitle: crystal structure of methylthioalkylmalate synthase (bjumam1.1) from2 brassica juncea
36d1u7ka_



not modelled 7.0 13
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
37c2jspA_



not modelled 6.9 29
PDB header:gene regulation
Chain: A: PDB Molecule:transcriptional regulatory protein ros;
PDBTitle: the prokaryotic cys2his2 zinc finger adopts a novel fold as2 revealed by the nmr structure of a. tumefaciens ros dna3 binding domain
38d1q3ma_



not modelled 6.8 38
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
39d1mwwa_



not modelled 6.6 3
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:Hypothetical protein HI1388.1
40c2ormA_



not modelled 6.6 13
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase hp0924;
PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori.
41c3aogA_



not modelled 6.3 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form)
42c3k8zD_



not modelled 6.2 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase;
PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis
43c4pagA_



not modelled 6.1 28
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: abc transporter solute binding protein from sulfurospirillum2 deleyianum dsm 6946
44d2aala1



not modelled 6.1 14
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MSAD-like
45c4b3nA_



not modelled 5.8 20
PDB header:sugar binding protein/ligase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, tripartite motif-
PDBTitle: crystal structure of rhesus trim5alpha pry/spry domain
46c2f9jP_



not modelled 5.8 33
PDB header:rna binding protein
Chain: P: PDB Molecule:splicing factor 3b subunit 1;
PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155
47c2veeC_



not modelled 5.7 14
PDB header:transport protein
Chain: C: PDB Molecule:protoglobin;
PDBTitle: structure of protoglobin from methanosarcina acetivorans2 c2a
48c2op8A_



not modelled 5.6 13
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
49c2kseA_



not modelled 5.4 58
PDB header:transferase
Chain: A: PDB Molecule:sensor protein qsec;
PDBTitle: backbone structure of the membrane domain of e. coli histidine kinase2 receptor qsec, center for structures of membrane proteins (csmp)3 target 4311c
50c4wiuA_



not modelled 5.3 17
PDB header:lyase,transferase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxykinase [gtp];
PDBTitle: crystal structure of pepck (rv0211) from mycobacterium tuberculosis in2 complex with oxalate and mn2+
51c3mlcC_



not modelled 5.2 10
PDB header:isomerase
Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase;
PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate

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Transmembrane helix prediction 

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