Phyre 2 Results for RVBD0279c_(PE_PGRS4)_336560

Email	mdejesus@rockefeller.edu
Description	RVBD0279c_(PE_PGRS4)_336560_339073
Date	Tue Jul 23 14:50:34 BST 2019
Unique Job ID	097baddcbd984358
Sequence	MSFVIAAPEV ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:44.109 Y:47.980 Z:53.158

Model (left) based on template c2qubG_

Top template information

PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens

Confidence and coverage

Confidence:

99.0%

Coverage:

26%

215 residues ( 26% of your sequence) have been modelled with 99.0% confidence by the single highest scoring template.

Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.

829 residues ( 99%) could be modelled at >90% confidence using multiple-templates.

You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.

Warning: 92% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M S F V I A A P E V I A A A A T D L A S L E S S I A A A N A A A A A N T T A L L A A G A D E V S T A V A A L F G A H G Q

Secondary structure

SS confidence

Disorder ? ? ?
? ?
? ? ? ? ? ? ? ? ? ? ? ?
?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence A Y Q A L S A Q A Q A F H A Q F V Q A L T S G G G A Y A A A E A A A T S P L L A P I N E F F L A N T G R P L I G N G T N

Secondary structure

SS confidence

Disorder
? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence G A P G T G A N G G D G G W L I G N G G A G G S G A A G V N G G A G G N G G A G G L I G N G G A G G A G G R A S T G T G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence G A G G A G G A A G M L F G A A G V G G P G G F A A A F G A T G G A G G A G G N G G L F A D G G V G G A G G A T D A G T

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence G G A G G S G G N G G L F G A G G T G G P G G F G I F G G G A G G D G G S G G L F G A G G T G G S G G T S I I N V G G N

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence G G A G G D A G M L S L G A A G G A G G S G G S S P D G G G G A G G I G G D G G T L F G S G G A G G V G G L G F D A G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence A G G A G G K A G L L S G A G G A G G A G G G S F A G A G G T G G A G G A P G L V G N A G N G G N G G A S A N G A G A A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480

Sequence G G A G G S G V L I G N G G N G G S G G T G A P A G T A G A G G L G G Q L L G R D G F N A P A S T P L H T L Q Q Q I L N

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 490 . . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540

Sequence A I N E P T Q A L T G R P L I G N G A N G T P G T G A D G G A G G W L F G N G G N G G H G A T G A D G G D G G S G G A G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 550 . . . . . . . . . 560 . . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600

Sequence G I L S G I G G T G G S G G I G T T G Q G G T G G T G G A A L L I G S G G T G G S G G F G L D T G G A G G R G G D A G L

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630 . . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660

Sequence F L G A A G T G G Q A A L S Q N F I G A G G T A G A G G T G G L F A N G G A G G A G G F G A N G G T G G N G L L F G A G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700 . . . . . . . . . 710 . . . . . . . . . 720

Sequence G T G G A G T L G A D G G A G G H G G L F G A G G T G G A G G S S G G T F G G N G G S G G N A G L L A L G A S G G A G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770 . . . . . . . . . 780

Sequence S G G S A L N V G G T G G V G G N G G S G G S L F G F G G A G G T G G S S G I G S S G G T G G D G G T A G V F G N G G D

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . .

Sequence G G A G G F G A G T G G N G G V G G N A V L I G N G G N G G N G G K A G G T P G A G G T S G L I I G E N G L N G L

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
?
? ? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 92%)

Alpha helix ( 11%)

Beta strand ( 1%)

Domain analysis [Show]

Rank Aligned region

PDB 2qub chain G

3D model

Region: 620 - 837
Aligned: 215
Modelled: 218
Confidence: 99.0%
Identity: 17%
PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens

Phyre2

PDB 2zj6 chain A

3D model

Region: 646 - 837
Aligned: 192
Modelled: 192
Confidence: 98.7%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase

Phyre2

PDB 1kap chain P domain 1

Region: 704 - 837
Aligned: 134
Modelled: 134
Confidence: 98.4%
Identity: 13%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 1k7i chain A domain 1

3D model

Region: 720 - 837
Aligned: 118
Modelled: 118
Confidence: 98.1%
Identity: 16%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 1ygv chain A

Region: 58 - 812
Aligned: 751
Modelled: 755
Confidence: 98.1%
Identity: 25%
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Phyre2

PDB 2g38 chain A

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 98.1%
Identity: 30%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis

Phyre2

PDB 2g38 chain A domain 1

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 98.1%
Identity: 30%
Fold: Ferritin-like
Superfamily: PE/PPE dimer-like
Family: PE

Phyre2

PDB 5xfs chain A

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 98.0%
Identity: 51%
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis

Phyre2

PDB 1k7q chain A

3D model

Region: 640 - 837
Aligned: 198
Modelled: 198
Confidence: 98.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant

Phyre2

PDB 1g9k chain A domain 1

Region: 706 - 837
Aligned: 132
Modelled: 132
Confidence: 98.0%
Identity: 15%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 2ml2 chain A

3D model

Region: 767 - 837
Aligned: 71
Modelled: 71
Confidence: 97.9%
Identity: 17%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r2 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase

Phyre2

PDB 2agm chain A

3D model

Region: 778 - 837
Aligned: 60
Modelled: 60
Confidence: 97.7%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4

Phyre2

PDB 1jiw chain P

3D model

Region: 736 - 837
Aligned: 102
Modelled: 102
Confidence: 97.7%
Identity: 14%
PDB header:hydrolase/hyrolase inhibitor
Chain: P: PDB Molecule:alkaline metalloproteinase;
PDBTitle: crystal structure of the apr-aprin complex

Phyre2

PDB 2ml3 chain A

3D model

Region: 674 - 837
Aligned: 164
Modelled: 164
Confidence: 97.7%
Identity: 10%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r3 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase

Phyre2

PDB 1sat chain A

3D model

Region: 673 - 819
Aligned: 147
Modelled: 147
Confidence: 97.7%
Identity: 13%
PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:serratia protease;
PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens

Phyre2

PDB 1om8 chain A

3D model

Region: 736 - 837
Aligned: 102
Modelled: 102
Confidence: 97.5%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:serralysin;
PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta

Phyre2

PDB 1sat chain A domain 1

3D model

Region: 704 - 837
Aligned: 134
Modelled: 134
Confidence: 97.5%
Identity: 13%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 5cxl chain A

Region: 776 - 837
Aligned: 62
Modelled: 62
Confidence: 96.8%
Identity: 18%
PDB header:toxin
Chain: A: PDB Molecule:bifunctional hemolysin/adenylate cyclase;
PDBTitle: crystal structure of rtx domain block v of adenylate cyclase toxin2 from bordetella pertussis

Phyre2

PDB 3p4g chain D

3D model

Region: 777 - 837
Aligned: 61
Modelled: 61
Confidence: 95.6%
Identity: 10%
PDB header:antifreeze protein
Chain: D: PDB Molecule:antifreeze protein;
PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium

Phyre2

PDB 3hqv chain B

3D model

Region: 69 - 795
Aligned: 721
Modelled: 727
Confidence: 91.6%
Identity: 24%
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement

Phyre2

1
c2qubG_

2
c2zj6A_

3
d1kapp1

4
d1k7ia1

5
c1ygvA_

6
c2g38A_

7
d2g38a1

8
c5xfsA_

9
c1k7qA_

10
d1g9ka1

11
c2ml2A_

12
c2agmA_

13
c1jiwP_

14
c2ml3A_

15
c1satA_

16
c1om8A_

17
d1sata1

18
c5cxlA_

19
c3p4gD_

20
c3hqvB_

21

22

23

24

25

26

27

28

29

30