Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0283_(-)_344022_345638
DateTue Jul 23 14:50:34 BST 2019
Unique Job ID5d77b21f6d72add7
SequenceMTNQQHDHDF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:65.415 Y:67.857 Z:99.664
Model (left) based on template c4kk7A_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion system protein eccb1;
PDBTitle: structure of eccb1 from the type vii (esx-1) secretion system of2 mycobacterium tuberculosis.
Confidence and coverage
Confidence:100.0% Coverage: 71%
383 residues ( 71% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4kk7A_
100.0 37
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion system protein eccb1;
PDBTitle: structure of eccb1 from the type vii (esx-1) secretion system of2 mycobacterium tuberculosis.
2c5cyuA_
100.0 37
PDB header:membrane protein
Chain: A: PDB Molecule:conserved membrane protein;
PDBTitle: structure of the soluble domain of eccb1 from the mycobacterium2 smegmatis esx-1 secretion system.
3d2fb5a1
49.7 10
Fold:YojJ-like
Superfamily:YojJ-like
Family:YojJ-like
4c6navI_
42.4 20
PDB header:structural protein
Chain: I: PDB Molecule:m9ud72;
PDBTitle: cryo-em reconstruction of sulfolobus islandicus lal14/1 pilus
5c2k9yA_
32.7 20
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
6c2k9yB_
32.7 20
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
7d1vh6a_
18.7 24
Fold:Four-helical up-and-down bundle
Superfamily:Flagellar export chaperone FliS
Family:Flagellar export chaperone FliS
8c1vh6A_
18.7 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:flagellar protein flis;
PDBTitle: crystal structure of a flagellar protein
9c5xefA_
18.6 5
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein flis;
PDBTitle: crystal structure of flagellar chaperone from bacteria
10c5gzbA_
18.4 40
PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional enhancer factor tef-3;
PDBTitle: crystal structure of transcription factor tead4 in complex with m-cat2 dna
11c2hzdA_
17.4 40
PDB header:gene regulation
Chain: A: PDB Molecule:transcriptional enhancer factor tef-1;
PDBTitle: nmr structure of the dna-binding tea domain and insights2 into tef-1 function
12c3k1iA_
17.2 5
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal strcture of flis-hp1076 complex in h. pylori
13c6f0kA_
16.3 14
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
14c2ciuA_
14.8 30
PDB header:protein transport
Chain: A: PDB Molecule:import inner membrane translocase subunit tim21
PDBTitle: structure of the ims domain of the mitochondrial import2 protein tim21 from s. cerevisiae
15c3c1zA_
14.4 8
PDB header:dna binding protein
Chain: A: PDB Molecule:dna integrity scanning protein disa;
PDBTitle: structure of the ligand-free form of a bacterial dna damage sensor2 protein
16c6gyyB_
14.3 17
PDB header:transferase
Chain: B: PDB Molecule:diadenylate cyclase;
PDBTitle: crystal structure of daca from staphylococcus aureus, n166c/t172c2 double mutant
17c2lxfA_
14.1 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a potential acylphosphatase from giardia2 lamblia, seattle structural genomics center for infectious disease3 target gilaa.01396.a
18c6cfwE_
13.8 18
PDB header:membrane protein
Chain: E: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
19c3hshA_
13.0 18
PDB header:protein binding
Chain: A: PDB Molecule:collagen alpha-1(xviii) chain;
PDBTitle: crystal structure of human collagen xviii trimerization domain2 (tetragonal crystal form)
20d2zjru1
13.0 20
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
21c2a7oA_
not modelled 11.2 15
PDB header:transcription
Chain: A: PDB Molecule:huntingtin interacting protein b;
PDBTitle: solution structure of the hset2/hypb sri domain
22c3n3fB_
not modelled 10.3 9
PDB header:protein binding
Chain: B: PDB Molecule:collagen alpha-1(xv) chain;
PDBTitle: crystal structure of the human collagen xv trimerization domain: a2 potent trimerizing unit common to multiplexin collagens
23c6ch3B_
not modelled 10.2 14
PDB header:structural protein
Chain: B: PDB Molecule:flagellar secretion chaperone flis,flagellin;
PDBTitle: crystal structure of the cytoplasmic domain of flha and flis-flic2 complex
24d1gado2
not modelled 10.0 21
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
25c1zzaA_
not modelled 9.9 14
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
26d1iioa_
not modelled 9.5 24
Fold:EF Hand-like
Superfamily:Hypothetical protein MTH865
Family:Hypothetical protein MTH865
27c2l02B_
not modelled 8.9 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375
28d2i5nh1
not modelled 8.8 26
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
29d1y7ma1
not modelled 8.7 7
Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
30c1k6nH_
not modelled 8.7 20
PDB header:photosynthesis
Chain: H: PDB Molecule:photosynthetic reaction center h subunit;
PDBTitle: e(l212)a,d(l213)a double mutant structure of photosynthetic reaction2 center from rhodobacter sphaeroides
31c4rv7C_
not modelled 8.4 10
PDB header:transferase
Chain: C: PDB Molecule:diadenylate cyclase;
PDBTitle: characterization of an essential diadenylate cyclase
32c6hraD_
not modelled 8.0 42
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e1 outward-facing state2 (state 1)
33c5mrwD_
not modelled 8.0 42
PDB header:hydrolase
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
34c5mrwH_
not modelled 8.0 42
PDB header:hydrolase
Chain: H: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
35c6hrbD_
not modelled 8.0 42
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e2 inward-facing state2 (state 2)
36c5mrwL_
not modelled 8.0 42
PDB header:hydrolase
Chain: L: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
37c2kncA_
not modelled 7.5 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
38c2lf3A_
not modelled 7.4 56
PDB header:signaling protein
Chain: A: PDB Molecule:effector protein hopab3;
PDBTitle: solution nmr structure of hoppmal_281_385 from pseudomonas syringae2 pv. maculicola str. es4326, midwest center for structural genomics3 target apc40104.5 and northeast structural genomics consortium target4 pst2a
39c2i5nH_
not modelled 7.2 26
PDB header:photosynthesis
Chain: H: PDB Molecule:reaction center protein h chain;
PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique
40c2dzqA_
not modelled 7.1 27
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-066, a gtf2i domain in human2 cdna
41c2dn5A_
not modelled 7.0 41
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-057, a gtf2i domain in human2 cdna
42d1ixsa_
not modelled 6.7 29
Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
43c2d99A_
not modelled 6.6 36
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-048, a gtf2i domain in human2 cdna
44d1q60a_
not modelled 6.4 36
Fold:GTF2I-like repeat
Superfamily:GTF2I-like repeat
Family:GTF2I-like repeat
45c2ed2A_
not modelled 6.3 23
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i;
PDBTitle: solution structure of rsgi ruh-069, a gtf2i domain in human2 cdna
46c2e3lA_
not modelled 6.3 27
PDB header:transcription
Chain: A: PDB Molecule:transcription factor gtf2ird2 beta;
PDBTitle: solution structure of rsgi ruh-068, a gtf2i domain in human2 cdna
47c5zjiO_
not modelled 6.3 22
PDB header:membrane protein
Chain: O: PDB Molecule:16kda membrane protein;
PDBTitle: structure of photosystem i supercomplex with light-harvesting2 complexes i and ii
48c2ejeA_
not modelled 5.9 27
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i;
PDBTitle: solution structure of rsgi ruh-071, a gtf2i domain in human2 cdna
49c2l8sA_
not modelled 5.5 9
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
50c2dn4A_
not modelled 5.4 27
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i;
PDBTitle: solution structure of rsgi ruh-060, a gtf2i domain in human2 cdna
51c4jonA_
not modelled 5.4 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:centrosomal protein of 170 kda;
PDBTitle: crystal structure of a centrosomal protein 170kda, transcript variant2 beta (cep170) from homo sapiens at 2.15 a resolution (psi community3 target, sundstrom)
52c2dzrA_
not modelled 5.1 32
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-067, a gtf2i domain in human2 cdna
53c1ohfB_
not modelled 5.0 30
PDB header:virus
Chain: B: PDB Molecule:nudaurelia capensis omega virus capsid protein;
PDBTitle: the refined structure of nudaurelia capensis omega virus
54c2k1kB_
not modelled 5.0 42
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
55c2k1kA_
not modelled 5.0 42
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
56c2k1lB_
not modelled 5.0 42
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below