Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0300_(-)_363826_364047
DateTue Jul 23 14:50:36 BST 2019
Unique Job ID73fd121ba558b6c8
SequenceMSDVLIRDIP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.122 Y:60.435 Z:55.650
Model (left) based on template c3h87D_
Top template information
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 99%
72 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3h87D_



100.0 100
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
2c2h1oH_



91.6 19
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
3d2bsqe1



91.6 19
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
4c2k5jB_



88.6 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
5d2bj7a1



79.5 40
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
6c2bj3D_



77.3 40
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
7c1q5vB_



76.8 44
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
8d2hzab1



76.1 44
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
9d2hzaa1



75.1 44
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
10c2ca9B_



68.1 32
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
11c2k29A_



51.6 28
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
12d2phcb1



48.0 22
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
13c4qoyC_



40.4 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase e1 component;
PDBTitle: novel binding motif and new flexibility revealed by structural2 analysis of a pyruvate dehydrogenase-dihydrolipoyl acetyltransferase3 sub-complex from the escherichia coli pyruvate dehydrogenase multi-4 enzyme complex
14c2zp2B_



40.3 26
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
15c5chhA_



35.3 22
PDB header:transcription
Chain: A: PDB Molecule:arac family transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator cdpr from pseudomonas2 aeruginosa
16d3proc1



33.4 17
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
17c2phcB_



33.1 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
18c5dudB_



32.8 26
PDB header:unknown function
Chain: B: PDB Molecule:ybgj;
PDBTitle: crystal structure of e. coli ybgjk
19c3mmlD_



29.7 17
PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
20c6ajnF_



22.9 21
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
21c6gtsC_



not modelled 22.4 21
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
22c2mdvB_



not modelled 20.4 39
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
23c6qeqD_



not modelled 18.7 4
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
24c4me7E_



not modelled 18.6 36
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:antitoxin endoai;
PDBTitle: crystal structure of bacillus subtilis toxin mazf in complex with2 cognate antitoxin maze
25c6humN_



not modelled 18.4 50
PDB header:proton transport
Chain: N: PDB Molecule:nad(p)h-quinone oxidoreductase subunit n;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
26c1zgwA_



not modelled 17.0 22
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna
27c4q2uM_



not modelled 14.5 22
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
28d2csba5



not modelled 13.8 69
Fold:Topoisomerase V catalytic domain-like
Superfamily:Topoisomerase V catalytic domain-like
Family:Topoisomerase V catalytic domain-like
29c4proD_



not modelled 13.7 11
PDB header:serine protease
Chain: D: PDB Molecule:alpha-lytic protease;
PDBTitle: alpha-lytic protease complexed with pro region
30c3fmtF_



not modelled 13.6 23
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
31d2auwa1



not modelled 13.1 54
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
32d2cyya1



not modelled 12.5 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
33d1b28a_



not modelled 12.4 35
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
34d1xrxa1



not modelled 11.7 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
35c1xrxD_



not modelled 11.7 21
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
36c3m6zA_



not modelled 11.5 69
PDB header:isomerase
Chain: A: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of an n-terminal 44 kda fragment of topoisomerase v2 in the presence of guanidium hydrochloride
37c1ojlD_



not modelled 11.4 29
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
38d1rfma_



not modelled 10.8 32
Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
39c5l33A_



not modelled 10.7 88
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
40c5z7iC_



not modelled 10.7 43
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra dna-binding domain(dbd)in complex with2 unmethylated dsdna
41c4fxeB_



not modelled 10.1 28
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
42d1vbga1



not modelled 9.7 43
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
43c6c5rF_



not modelled 9.1 60
PDB header:cytosolic protein
Chain: F: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the soluble domain of the mitochondrial calcium2 uniporter
44c2rgoA_



not modelled 8.4 34
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
45c3oepA_



not modelled 8.1 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0988;
PDBTitle: crystal structure of ttha0988 in space group p43212
46c3oq9C_



not modelled 8.1 16
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: structure of the fas/fadd death domain assembly
47c5k57A_



not modelled 7.7 45
PDB header:hydrolase
Chain: A: PDB Molecule:protein ddi1 homolog 2;
PDBTitle: hdd domain from human ddi2
48c2kz3A_



not modelled 7.7 34
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein rad51l3;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83
49d1g2ha_



not modelled 7.5 43
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
50c1g2hA_



not modelled 7.5 43
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
51d1vz0a1



not modelled 7.5 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
52d1fipa_



not modelled 7.3 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
53c1vw42_



not modelled 7.1 24
PDB header:ribosome
Chain: 2: PDB Molecule:54s ribosomal protein l28, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
54d1y9ba1



not modelled 7.0 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
55d1myla_



not modelled 7.0 23
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
56d1mylb_



not modelled 6.9 30
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
57c6g1nB_



not modelled 6.9 29
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
58c2hwgA_



not modelled 6.7 32
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of phosphorylated enzyme i of the phosphoenolpyruvate:sugar2 phosphotransferase system
59c2q9lA_



not modelled 6.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212)
60d1zj8a1



not modelled 6.7 42
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
61c2auwB_



not modelled 6.6 54
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
62d1ntca_



not modelled 6.5 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
63c2ph0A_



not modelled 6.5 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia carotovora.2 nesg target ewr41.
64c2w48D_



not modelled 6.5 28
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
65d1whza_



not modelled 6.4 25
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YcfA-like
66d1i1ga1



not modelled 6.4 37
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
67c2csdB_



not modelled 6.2 69
PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
68c1umqA_



not modelled 6.1 36
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
69d1umqa_



not modelled 6.1 36
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
70d1r71a_



not modelled 5.9 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
71d3bwga1



not modelled 5.9 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
72d1bl0a1



not modelled 5.8 32
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
73d2oiea1



not modelled 5.8 32
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
74c2fhwA_



not modelled 5.7 42
PDB header:signaling protein
Chain: A: PDB Molecule:relaxin 3 (prorelaxin h3) (insulin-like peptide
PDBTitle: solution structure of human relaxin-3
75d2gtaa1



not modelled 5.7 39
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
76c3iacA_



not modelled 5.7 42
PDB header:isomerase
Chain: A: PDB Molecule:glucuronate isomerase;
PDBTitle: 2.2 angstrom crystal structure of glucuronate isomerase from2 salmonella typhimurium.
77c4o6xA_



not modelled 5.6 24
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-3;
PDBTitle: crystal structure of human ankyrin g death domain
78d1kbla1



not modelled 5.5 40
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
79d1h6za1



not modelled 5.5 36
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
80c4ifdE_



not modelled 5.2 35
PDB header:hydrolase/rna
Chain: E: PDB Molecule:exosome complex component rrp42;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
81c4gfjA_



not modelled 5.1 69
PDB header:isomerase
Chain: A: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topo-78, an n-terminal 78kda fragment of2 topoisomerase v

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