Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0301_(-)_364044_364469
DateTue Jul 23 14:50:36 BST 2019
Unique Job ID6a7cbc7dcbbd6b3a
SequenceVTDQRWLIDK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.154 Y:36.053 Z:45.306
Model (left) based on template c3h87B_
Top template information
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 98%
138 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3h87B_



100.0 100
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
2c5sv2A_



100.0 37
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
3d1v96a1



100.0 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c4chgC_



99.9 22
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
5c3dboB_



99.9 23
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
6d1y82a1



99.9 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
7c3tndC_



99.9 21
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
8c6a7vG_



99.9 27
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
9c6nklA_



99.9 19
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
10c3zvkC_



99.9 16
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
11c5l6mC_



99.9 19
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
12d2h1ca1



99.9 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
13c4xgrG_



99.8 20
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
14c5x3tD_



99.6 22
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
15c5wzfB_



99.6 18
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
16d2fe1a1



99.5 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17c2fe1A_



99.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
18c3ix7A_



98.8 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
19c3i8oA_



98.6 14
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
20c5ywwA_



98.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
21d1w8ia_



not modelled 98.5 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
22d1v8pa_



not modelled 98.5 24
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
23c5f4hF_



not modelled 98.4 17
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
24c1v8pK_



not modelled 98.4 24
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
25d1o4wa_



not modelled 98.2 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
26c2lcqA_



not modelled 98.2 17
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
27c2hwwC_



not modelled 97.4 17
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5yz4A_



not modelled 95.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5jpqd_



not modelled 95.9 20
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c6g5iy_



not modelled 81.7 18
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
31c4mj7B_



not modelled 81.5 14
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
32c2hwyB_



not modelled 81.5 16
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
33c3v32B_



not modelled 64.2 28
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
34d1cmwa2



not modelled 56.3 30
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
35c3v33A_



not modelled 50.6 26
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
36c3zddA_



not modelled 49.9 30
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
37c1sy9B_



not modelled 35.0 43
PDB header:calcium-binding protein
Chain: B: PDB Molecule:cyclic-nucleotide-gated olfactory channel;
PDBTitle: structure of calmodulin complexed with a fragment of the2 olfactory cng channel
38d1tfra2



not modelled 26.0 27
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
39d1xo1a2



not modelled 20.8 31
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
40c1ut8B_



not modelled 18.5 26
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
41c4mitG_



not modelled 16.6 33
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
42c4csqA_



not modelled 15.1 56
PDB header:structural protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr solution structure of pa3793 from pseudomonas aeruginosa
43d1aisb2



not modelled 14.0 19
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Transcription factor IIB (TFIIB), core domain
44c1cmwA_



not modelled 13.1 30
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
45c2n22B_



not modelled 8.6 43
PDB header:transcription
Chain: B: PDB Molecule:transcription factor p65;
PDBTitle: nmr structure of the complex between the ph domain of the tfb1 subunit2 from tfiih and the transactivation domain of p65
46c2ihnA_



not modelled 8.0 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
47d1vola2



not modelled 7.6 18
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Transcription factor IIB (TFIIB), core domain
48c2m0jB_



not modelled 7.4 29
PDB header:metal binding protein/metal transport
Chain: B: PDB Molecule:peptide from cyclic nucleotide-gated olfactory channel;
PDBTitle: 3d structure of calmodulin and calmodulin binding domain of olfactory2 cyclic nucleotide-gated ion channel complex
49c2m0kB_



not modelled 7.4 29
PDB header:metal binding protein/metal transport
Chain: B: PDB Molecule:peptide from cyclic nucleotide-gated olfactory channel;
PDBTitle: 3d structure of calmodulin and calmodulin binding domain of rat2 olfactory cyclic nucleotide-gated ion channel
50c5jx6C_



not modelled 7.1 27
PDB header:hydrolase
Chain: C: PDB Molecule:glucanase;
PDBTitle: gh6 orpinomyces sp. y102 enzyme
51c2mvzA_



not modelled 6.3 0
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: solution structure for cyclophilin a from geobacillus kaustophilus
52c5urnB_



not modelled 5.8 46
PDB header:transcription
Chain: B: PDB Molecule:transcription factor p65;
PDBTitle: nmr structure of the complex between the ph domain of the tfb1 subunit2 from tfiih and the transactivation domain 1 of p65
53c3q8lA_



not modelled 5.7 17
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
54c4mitE_



not modelled 5.4 33
PDB header:signaling protein
Chain: E: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
55d1qjwa_



not modelled 5.2 9
Fold:7-stranded beta/alpha barrel
Superfamily:Glycosyl hydrolases family 6, cellulases
Family:Glycosyl hydrolases family 6, cellulases

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