Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0306_(-)_375914_376585
DateTue Jul 23 14:50:37 BST 2019
Unique Job ID77201b7029c05cbf
SequenceMFSAPERRAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.267 Y:48.003 Z:52.057
Model (left) based on template c2islB_
Top template information
PDB header:flavoprotein
Chain: B: PDB Molecule:blub;
PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form)
Confidence and coverage
Confidence:100.0% Coverage: 94%
210 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2islB_
100.0 40
PDB header:flavoprotein
Chain: B: PDB Molecule:blub;
PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form)
2d2frea1
100.0 22
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
3c5heiE_
100.0 20
PDB header:oxidoreductase
Chain: E: PDB Molecule:nfra2;
PDBTitle: structure of b. megaterium nfra2
4d1bkja_
100.0 20
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
5c3n2sD_
100.0 21
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase;
PDBTitle: structure of nfra1 nitroreductase from b. subtilis
6d1f5va_
100.0 26
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
7d1zcha1
100.0 22
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
8c5hdjA_
100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:nfra1;
PDBTitle: structure of b. megaterium nfra1
9c4eo3A_
100.0 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein/nadh dehydrogenase;
PDBTitle: peroxiredoxin nitroreductase fusion enzyme
10c3eofB_
100.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution
11c5ko8B_
100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of haliscomenobacter hydrossis iodotyrosine2 deiodinase (iyd) bound to fmn and mono-iodotyrosine (i-tyr)
12c3gh8A_
100.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:iodotyrosine dehalogenase 1;
PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit)
13c2wzvB_
100.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:nfnb protein;
PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis
14c4xomB_
100.0 22
PDB header:unknown function
Chain: B: PDB Molecule:coenzyme f420:l-glutamate ligase;
PDBTitle: coenzyme f420:l-glutamate ligase (fbib) from mycobacterium2 tuberculosis (c-terminal domain).
15d1vfra_
100.0 17
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
16c3g14B_
100.0 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of nitroreductase family protein (yp_877874.1) from2 clostridium novyi nt at 1.75 a resolution
17d2ifaa1
100.0 14
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
18c3bemA_
100.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn;
PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution
19c2hayD_
100.0 21
PDB header:oxidoreductase
Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase;
PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas
20c3gagB_
100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase;
PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution
21d1ywqa1
not modelled 100.0 16
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
22c6czpH_
not modelled 100.0 20
PDB header:oxidoreductase
Chain: H: PDB Molecule:oxygen-insensitive nad(p)h nitroreductase;
PDBTitle: 2.2 angstrom resolution crystal structure oxygen-insensitive nad(p)h-2 dependent nitroreductase nfsb from vibrio vulnificus in complex with3 fmn
23c3gr3B_
not modelled 100.0 23
PDB header:flavoprotein
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution
24d1ykia1
not modelled 100.0 19
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
25c4dn2A_
not modelled 100.0 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of putative nitroreductase from geobacter2 metallireducens gs-15
26c3e39A_
not modelled 100.0 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 a3 resolution
27d1kqba_
not modelled 100.0 21
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
28c4qlyB_
not modelled 100.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:enone reductase cla-er;
PDBTitle: crystal structure of cla-er, a novel enone reductase catalyzing a key2 step of a gut-bacterial fatty acid saturation metabolism,3 biohydrogenation
29c3koqC_
not modelled 100.0 24
PDB header:oxidoreductase
Chain: C: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of a nitroreductase family protein (cd3355) from2 clostridium difficile 630 at 1.58 a resolution
30c3gbhC_
not modelled 100.0 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase;
PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution
31c3of4A_
not modelled 100.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution
32c3eo8A_
not modelled 100.0 21
PDB header:flavoprotein
Chain: A: PDB Molecule:blub-like flavoprotein;
PDBTitle: crystal structure of blub-like flavoprotein (yp_001089088.1) from2 clostridium difficile 630 at 1.74 a resolution
33c3ge6B_
not modelled 100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution
34c3gfaB_
not modelled 100.0 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (cd3205) from clostridium difficile 630 at 1.35 a resolution
35c3to0A_
not modelled 100.0 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:iodotyrosine deiodinase 1;
PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) c217a,2 c239a bound to fmn
36c2wqfA_
not modelled 100.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper induced nitroreductase d;
PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn
37d2b67a1
not modelled 100.0 17
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
38d1noxa_
not modelled 100.0 24
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
39c3k6hB_
not modelled 100.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58
40c3ge5A_
not modelled 100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h:fmn oxidoreductase;
PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310)2 from porphyromonas gingivalis w83 at 1.70 a resolution
41c3qdlD_
not modelled 100.0 23
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxygen-insensitive nadph nitroreductase;
PDBTitle: crystal structure of rdxa from helicobacter pyroli
42c2h0uA_
not modelled 100.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph-flavin oxidoreductase;
PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori
43c2r01A_
not modelled 100.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of a putative fmn-dependent nitroreductase (ct0345)2 from chlorobium tepidum tls at 1.15 a resolution
44c3kwkA_
not modelled 100.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase;
PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution
45c2i7hE_
not modelled 100.0 24
PDB header:oxidoreductase
Chain: E: PDB Molecule:nitroreductase-like family protein;
PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus
46c3m5kA_
not modelled 100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase;
PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (bdi_1728) from parabacteroides distasonis atcc 85033 at 1.86 a resolution
47c3ek3A_
not modelled 100.0 20
PDB header:flavoprotein
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of nitroreductase with bound fmn (yp_211706.1) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution
48c3e10B_
not modelled 100.0 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadh oxidase;
PDBTitle: crystal structure of putative nadh oxidase (np_348178.1) from2 clostridium acetobutylicum at 1.40 a resolution
49c5j6cA_
not modelled 100.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative reductase;
PDBTitle: fmn-dependent nitroreductase (cdr20291_0767) from clostridium2 difficile r20291
50c3pxvD_
not modelled 100.0 23
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a nitroreductase with bound fmn (dhaf_2018) from2 desulfitobacterium hafniense dcb-2 at 2.30 a resolution
51c5j62B_
not modelled 100.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative reductase;
PDBTitle: fmn-dependent nitroreductase (cdr20291_0684) from clostridium2 difficile r20291
52c3hoiA_
not modelled 100.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nitroreductase bf3017;
PDBTitle: crystal structure of fmn-dependent nitroreductase bf3017 from2 bacteroides fragilis nctc 9343 (yp_212631.1) from bacteroides3 fragilis nctc 9343 at 1.55 a resolution
53c4urpB_
not modelled 100.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:fatty acid repression mutant protein 2;
PDBTitle: the crystal structure of nitroreductase from saccharomyces2 cerevisiae
54c3hj9A_
not modelled 100.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of a putative nitroreductase (reut_a1228) from2 ralstonia eutropha jmp134 at 2.00 a resolution
55c3bm2B_
not modelled 100.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:protein ydja;
PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor
56c5lq4B_
not modelled 100.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:cyagox;
PDBTitle: the structure of thcox, the first oxidase protein from the cyanobactin2 pathways
57c3eo7A_
not modelled 100.0 16
PDB header:flavoprotein
Chain: A: PDB Molecule:putative nitroreductase;
PDBTitle: crystal structure of a putative nitroreductase (ava_2154) from2 anabaena variabilis atcc 29413 at 1.80 a resolution
58d1vkwa_
not modelled 99.9 16
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:Putative nitroreductase TM1586
59c2ymvA_
not modelled 99.9 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:acg nitroreductase;
PDBTitle: structure of reduced m smegmatis 5246, a homologue of m.2 tuberculosis acg
60c6gosC_
not modelled 99.8 17
PDB header:antibiotic/inhibitor
Chain: C: PDB Molecule:microcin b17-processing protein mcbc;
PDBTitle: e. coli microcin synthetase mcbbcd complex with pro-mccb17 bound
61d1oeyj_
not modelled 52.6 23
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
62d2ovra1
not modelled 42.0 20
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
63d1fs2b1
not modelled 41.6 21
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
64c2ovqA_
not modelled 39.3 20
PDB header:transcription/cell cycle
Chain: A: PDB Molecule:s-phase kinase-associated protein 1a;
PDBTitle: structure of the skp1-fbw7-cyclinedegc complex
65c2p1nD_
not modelled 38.4 20
PDB header:signaling protein
Chain: D: PDB Molecule:skp1-like protein 1a;
PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
66c1nexC_
not modelled 38.0 20
PDB header:ligase, cell cycle
Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3
PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
67d1nexa1
not modelled 33.3 20
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
68d2oc6a1
not modelled 29.7 14
Fold:Secretion chaperone-like
Superfamily:YdhG-like
Family:YdhG-like
69d2i8da1
not modelled 26.0 10
Fold:Secretion chaperone-like
Superfamily:YdhG-like
Family:YdhG-like
70c1h6zA_
not modelled 22.7 14
PDB header:transferase
Chain: A: PDB Molecule:pyruvate phosphate dikinase;
PDBTitle: 3.0 a resolution crystal structure of glycosomal pyruvate2 phosphate dikinase from trypanosoma brucei
71c2kl4A_
not modelled 14.6 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2032 protein;
PDBTitle: nmr structure of the protein nb7804a
72d1vbga1
not modelled 14.1 13
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
73c3nznA_
not modelled 13.7 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1
74c2ds2B_
not modelled 13.1 27
PDB header:plant protein
Chain: B: PDB Molecule:sweet protein mabinlin-2 chain b;
PDBTitle: crystal structure of mabinlin ii
75c4n0hF_
not modelled 11.1 11
PDB header:ligase
Chain: F: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit f,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab
76c5domA_
not modelled 10.9 18
PDB header:plant protein
Chain: A: PDB Molecule:2s albumin;
PDBTitle: crystal structure, maturation and flocculating properties of a 2s2 albumin from moringa oleifera seeds
77c1jsuC_
not modelled 10.6 24
PDB header:complex (transferase/cyclin/inhibitor)
Chain: C: PDB Molecule:p27;
PDBTitle: p27(kip1)/cyclin a/cdk2 complex
78c5u87A_
not modelled 9.9 14
PDB header:plant protein
Chain: A: PDB Molecule:preproalbumin paws1;
PDBTitle: nmr structure of the precursor protein paws1 comprising sfti-1 and a2 seed storage albumin
79c3dnjB_
not modelled 8.5 15
PDB header:peptide binding protein
Chain: B: PDB Molecule:atp-dependent clp protease adapter protein clps;
PDBTitle: the structure of the caulobacter crescentus clps protease adaptor2 protein in complex with a n-end rule peptide
80d1gz0a2
not modelled 7.8 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:RNA 2'-O ribose methyltransferase substrate binding domain
81c3gyxJ_
not modelled 7.1 17
PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
82c6chgE_
not modelled 7.0 22
PDB header:transferase
Chain: E: PDB Molecule:klla0e03521p;
PDBTitle: crystal structure of the yeast compass catalytic module
83c4yjxB_
not modelled 7.0 15
PDB header:protein binding
Chain: B: PDB Molecule:atp-dependent clp protease adapter protein clps 2;
PDBTitle: the structure of agrobacterium tumefaciens clps2 bound to l-2 phenylalaninamide
84d1jwea_
not modelled 6.9 27
Fold:N-terminal domain of DnaB helicase
Superfamily:N-terminal domain of DnaB helicase
Family:N-terminal domain of DnaB helicase
85d1k78a1
not modelled 6.7 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
86c2lvfA_
not modelled 6.6 24
PDB header:allergen
Chain: A: PDB Molecule:2s albumin;
PDBTitle: solution structure of the brazil nut 2s albumin ber e 1
87c4pauA_
not modelled 6.6 40
PDB header:unknown function
Chain: A: PDB Molecule:nitrogen regulatory protein a;
PDBTitle: hypothetical protein sa1058 from s. aureus.
88d1h6za1
not modelled 6.2 16
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
89c5l87A_
not modelled 6.0 8
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
90d3cnva1
not modelled 5.9 24
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
91c3nr7A_
not modelled 5.8 14
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein h-ns;
PDBTitle: crystal structure of s. typhimurium h-ns 1-83
92c5abxB_
not modelled 5.7 13
PDB header:translation
Chain: B: PDB Molecule:4e-binding protein mextli;
PDBTitle: complex of c. elegans eif4e-3 with the 4e-binding protein2 mextli and cap analog
93d6paxa1
not modelled 5.6 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
94d1gz0f2
not modelled 5.2 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:RNA 2'-O ribose methyltransferase substrate binding domain
95c1sm7A_
not modelled 5.2 24
PDB header:plant protein
Chain: A: PDB Molecule:recombinant ib pronapin;
PDBTitle: solution structure of the recombinant pronapin precursor, bnib.
96c5dbuI_
not modelled 5.2 14
PDB header:lyase
Chain: I: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of 2-deoxyribose-5-phosphate aldolase (1-220) from2 streptococcus suis
97c1pnbB_
not modelled 5.1 26
PDB header:seed storage protein
Chain: B: PDB Molecule:napin bnib;
PDBTitle: structure of napin bnib, nmr, 10 structures

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