Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0307c_(-)_376573_377055
DateTue Jul 23 14:50:37 BST 2019
Unique Job IDf12feb21878cdb23
SequenceMAVIVRKWFG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.723 Y:26.155 Z:38.391
Model (left) based on template d2g3wa1
Top template information
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:YaeQ-like
Confidence and coverage
Confidence: 45.2% Coverage: 28%
44 residues ( 28% of your sequence) have been modelled with 45.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2g3wa1



45.2 27
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:YaeQ-like
2c3c0uA_



39.9 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yaeq;
PDBTitle: crystal structure of e.coli yaeq protein
3d2ot9a1



39.1 20
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:YaeQ-like
4c4ldxB_



25.8 29
PDB header:transcription/dna
Chain: B: PDB Molecule:auxin response factor 1;
PDBTitle: crystal structure of the dna binding domain of arabidopsis thaliana2 auxin response factor 1 (arf1) in complex with protomor-like sequence3 er7
5c3zeyI_



12.0 33
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
6d1t95a3



9.8 20
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:Hypothetical protein AF0491, C-terminal domain
7c3lgeF_



9.4 56
PDB header:lyase/protein binding
Chain: F: PDB Molecule:sorting nexin-9;
PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex
8c3lgeG_



9.4 56
PDB header:lyase/protein binding
Chain: G: PDB Molecule:sorting nexin-9;
PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex
9c2m9uA_



9.4 29
PDB header:viral protein
Chain: A: PDB Molecule:integrase p46;
PDBTitle: solution nmr structure of the c-terminal domain (ctd) of moloney2 murine leukemia virus integrase, northeast structural genomics target3 or41a
10d3bz6a1



9.2 58
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PSPTO2686-like
11d1wjna_



8.7 30
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
12c5ze4A_



7.7 32
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
13c6gcsj_



7.6 67
PDB header:oxidoreductase
Chain: J: PDB Molecule:nujm subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
14c3gxvD_



6.3 70
PDB header:hydrolase/replication
Chain: D: PDB Molecule:replicative dna helicase;
PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase
15c2qldA_



6.3 24
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily b member 1;
PDBTitle: human hsp40 hdj1
16c5ym0A_



6.1 30
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the crystal structure of dhad
17c3gxvC_



6.0 70
PDB header:hydrolase/replication
Chain: C: PDB Molecule:replicative dna helicase;
PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase
18d1c5ea_



5.8 55
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
19d2a0ua1



5.6 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
20c4wfdA_



5.5 5
PDB header:hydrolase
Chain: A: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of the rrp6-rrp47-mtr4 interaction
21d1td4a_



not modelled 5.5 55
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
22d1yq2a4



not modelled 5.5 19
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:beta-Galactosidase, domain 5
23c2ro5B_



not modelled 5.4 35
PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: rdc-refined solution structure of the n-terminal dna recognition2 domain of the bacillus subtilis transition-state regulator spovt
24c1h7dA_



not modelled 5.2 50
PDB header:acyltransferase
Chain: A: PDB Molecule:aminolevulinic acid synthase 2, erythroid;
PDBTitle: solution structure of the 49 aa presequence of 5-alas

Binding site prediction 

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