Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0309_(-)_377931_378587
DateTue Jul 23 14:50:37 BST 2019
Unique Job IDd2d3db324eb5f340
SequenceMSRLLALLCA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.887 Y:42.537 Z:34.795
Model (left) based on template c4y4vB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: structure of helicobacter pylori csd6 in the d-ala-bound state
Confidence and coverage
Confidence: 99.8% Coverage: 52%
113 residues ( 52% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
191 residues ( 88%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4y4vB_
99.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: structure of helicobacter pylori csd6 in the d-ala-bound state
2c4z7aA_
98.7 21
PDB header:transferase
Chain: A: PDB Molecule:mycobacterium tuberculosis (3,3)l,d-transpeptidase type 5;
PDBTitle: structural and biochemical characterization of a non-functionally2 redundant m. tuberculosis (3,3) l,d-transpeptidase, ldtmt5.
3d1y7ma1
98.7 17
Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
4c4xvoB_
98.6 18
PDB header:transferase
Chain: B: PDB Molecule:l,d-transpeptidase;
PDBTitle: l,d-transpeptidase from mycobacterium smegmatis
5c3vynB_
98.6 13
PDB header:transferase
Chain: B: PDB Molecule:probable conserved lipoprotein lpps;
PDBTitle: crystal structure of mycobacterium tuberculosis l,d-transpeptidase2 ldtmt2 n55 truncation mutant (resideus 55-408)
6d1zata1
98.6 17
Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
7c4jmxA_
98.6 20
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:probable l,d-transpeptidase ldta;
PDBTitle: structure of ld transpeptidase ldtmt1 in complex with imipenem
8c1y7mB_
98.4 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein bsu14040;
PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution
9c3u1qB_
98.4 12
PDB header:peptidoglycan binding protein
Chain: B: PDB Molecule:mycobacteria tuberculosis ld-transpeptidase type 2;
PDBTitle: crystal structure of m. tuberculosis ld-transpeptidase type 2 with 2-2 mercaptoethanol
10c5bmqA_
98.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:erfk/ybis/ycfs/ynhg family protein;
PDBTitle: crystal structure of l,d-transpeptidase (yku) from stackebrandtia2 nassauensis
11c4k73A_
98.3 18
PDB header:transferase
Chain: A: PDB Molecule:l,d-transpeptidase;
PDBTitle: x-ray crystal structure of an l,d-transpeptidase from mycobacterium2 tuberculosis h37rv
12c2hklB_
98.1 16
PDB header:transferase
Chain: B: PDB Molecule:l,d-transpeptidase;
PDBTitle: crystal structure of enterococcus faecium l,d-2 transpeptidase c442s mutant
13c4lzhA_
97.6 18
PDB header:transferase
Chain: A: PDB Molecule:l,d-transpeptidase;
PDBTitle: l,d-transpeptidase from klebsiella pneumoniae
14c4xxtA_
97.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:fusion of predicted zn-dependent amidase/peptidase (cell
PDBTitle: crystal structure of fused zn-dependent2 amidase/peptidase/peptodoglycan-binding domain-containing protein3 from clostridium acetobutylicum atcc 824
15c4lpqA_
96.1 15
PDB header:transferase
Chain: A: PDB Molecule:erfk/ybis/ycfs/ynhg family protein;
PDBTitle: crystal structure of the l,d-transpeptidase (residues 123-326) from2 xylanimonas cellulosilytica dsm 15894
16c1wydB_
42.1 20
PDB header:ligase
Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii
17c5groA_
40.0 15
PDB header:ligase
Chain: A: PDB Molecule:aspartate--trna(asp/asn) ligase;
PDBTitle: crystal structure of the n-terminal anticodon-binding domain of non-2 discriminating aspartyl-trna synthetase from helicobacter pylori
18d1l0wa1
38.0 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
19c3i7fA_
36.7 19
PDB header:ligase
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: aspartyl trna synthetase from entamoeba histolytica
20d1b8aa1
35.3 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
21c4gn5A_
not modelled 31.7 17
PDB header:de novo protein/hydrolase
Chain: A: PDB Molecule:obody am3l15;
PDBTitle: obody am3l15 bound to hen egg-white lysozyme
22d1krta_
not modelled 27.4 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
23d1c0aa1
not modelled 25.5 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
24c4glaD_
not modelled 19.2 20
PDB header:hydrolase/de novo protein
Chain: D: PDB Molecule:obody nl8;
PDBTitle: obody nl8 bound to hen egg-white lysozyme
25d1e1oa1
not modelled 17.7 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
26c1u2zC_
not modelled 17.0 17
PDB header:transferase
Chain: C: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79
PDBTitle: crystal structure of histone k79 methyltransferase dot1p2 from yeast
27d2nwua1
not modelled 15.7 19
Fold:RL5-like
Superfamily:RL5-like
Family:SSO1042-like
28c4wgkB_
not modelled 15.4 15
PDB header:hydrolase
Chain: B: PDB Molecule:neutral ceramidase;
PDBTitle: crystal structure of human neutral ceramidase with zn-bound phosphate
29c3n7xA_
not modelled 14.5 47
PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: crystal structure of penaeus stylirostris densovirus capsid
30c5elnC_
not modelled 13.6 15
PDB header:ligase
Chain: C: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from cryptosporidium parvum2 complexed with l-lysine
31c5wy2D_
not modelled 12.8 38
PDB header:transport protein/unknown function
Chain: D: PDB Molecule:ince;
PDBTitle: human snx5 px domain in complex with chlamydia ince c terminus
32c5tgiD_
not modelled 12.8 38
PDB header:protein transport
Chain: D: PDB Molecule:ince;
PDBTitle: structure of the snx5 px domain in complex with chlamydial protein2 ince in space group p212121
33c5tghH_
not modelled 12.8 38
PDB header:protein transport
Chain: H: PDB Molecule:ince;
PDBTitle: structure of the snx5 px domain in complex with chlamydial protein2 ince in space group p32
34c5tghF_
not modelled 12.8 38
PDB header:protein transport
Chain: F: PDB Molecule:ince;
PDBTitle: structure of the snx5 px domain in complex with chlamydial protein2 ince in space group p32
35c5wy2B_
not modelled 12.8 38
PDB header:transport protein/unknown function
Chain: B: PDB Molecule:ince;
PDBTitle: human snx5 px domain in complex with chlamydia ince c terminus
36d1bbua1
not modelled 12.7 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
37c5tgjB_
not modelled 12.3 38
PDB header:protein transport
Chain: B: PDB Molecule:ince;
PDBTitle: structure of the snx5 px domain in complex with chlamydial protein2 ince in space group i2
38c5tgjD_
not modelled 12.3 38
PDB header:protein transport
Chain: D: PDB Molecule:ince;
PDBTitle: structure of the snx5 px domain in complex with chlamydial protein2 ince in space group i2
39c5tghD_
not modelled 12.3 38
PDB header:protein transport
Chain: D: PDB Molecule:ince;
PDBTitle: structure of the snx5 px domain in complex with chlamydial protein2 ince in space group p32
40c5tgiC_
not modelled 11.9 38
PDB header:protein transport
Chain: C: PDB Molecule:ince;
PDBTitle: structure of the snx5 px domain in complex with chlamydial protein2 ince in space group p212121
41c4wznB_
not modelled 11.8 27
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of the 2b protein soluble domain from hepatitis a2 virus
42c4j15A_
not modelled 11.7 10
PDB header:ligase
Chain: A: PDB Molecule:aspartate--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human cytosolic aspartyl-trna synthetase, a2 component of multi-trna synthetase complex
43c2lq3A_
not modelled 11.6 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of syc0711_d from synechococcus sp., northeast2 structural genomics consortium (nesg) target snr212
44c1efwA_
not modelled 11.6 20
PDB header:ligase/rna
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli
45c3ushB_
not modelled 11.5 35
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q2s0r5 protein from salinibacter ruber,2 northeast structural genomics consortium target srr207
46c2lcxB_
not modelled 10.9 32
PDB header:transferase
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: spatial structure of the erbb4 dimeric tm domain
47c2l2tA_
not modelled 10.9 32
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain
48c5tghB_
not modelled 10.2 38
PDB header:protein transport
Chain: B: PDB Molecule:ince;
PDBTitle: structure of the snx5 px domain in complex with chlamydial protein2 ince in space group p32
49d1v3aa_
not modelled 10.1 33
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
50c3c9gB_
not modelled 10.0 14
PDB header:nucleotide binding protein
Chain: B: PDB Molecule:upf0200/upf0201 protein af_1395;
PDBTitle: crystal structure of uncharacterized upf0201 protein af_135
51c5xw4A_
not modelled 10.0 26
PDB header:cell cycle
Chain: A: PDB Molecule:tyrosine-protein phosphatase cdc14;
PDBTitle: crystal structure of budding yeast cdc14p (wild type) in the apo state
52c3s4oB_
not modelled 10.0 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein tyrosine phosphatase-like protein;
PDBTitle: protein tyrosine phosphatase (putative) from leishmania major
53c2imgA_
not modelled 9.6 31
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 23;
PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion
54d1y02a1
not modelled 9.2 25
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
55c6ntwA_
not modelled 8.9 30
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:probable l,d-transpeptidase ycbb;
PDBTitle: crystal structure of e. coli ycbb
56d1ohea2
not modelled 8.3 28
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
57c1oheA_
not modelled 8.2 28
PDB header:hydrolase
Chain: A: PDB Molecule:cdc14b2 phosphatase;
PDBTitle: structure of cdc14b phosphatase with a peptide ligand
58c1b8aB_
not modelled 7.7 27
PDB header:ligase
Chain: B: PDB Molecule:protein (aspartyl-trna synthetase);
PDBTitle: aspartyl-trna synthetase
59c1yypA_
not modelled 7.3 18
PDB header:replication/transferase
Chain: A: PDB Molecule:dna polymerase processivity factor;
PDBTitle: crystal structure of cytomegalovirus ul44 bound to c-terminal peptide2 from cmv ul54
60c1nw3A_
not modelled 7.3 22
PDB header:transferase
Chain: A: PDB Molecule:histone methyltransferase dot1l;
PDBTitle: structure of the catalytic domain of human dot1l, a non-set domain2 nucleosomal histone methyltransferase
61d1nw3a_
not modelled 7.3 22
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l
62c4er3A_
not modelled 7.0 22
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79 specific;
PDBTitle: crystal structure of human dot1l in complex with inhibitor epz004777
63d1ju2a1
not modelled 6.9 29
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
64c6e8rC_
not modelled 6.8 38
PDB header:protein transport
Chain: C: PDB Molecule:ince;
PDBTitle: structure of the snx32 px domain in complex with chlamydial protein2 ince in space group i121
65c6e8rD_
not modelled 6.8 38
PDB header:protein transport
Chain: D: PDB Molecule:ince;
PDBTitle: structure of the snx32 px domain in complex with chlamydial protein2 ince in space group i121
66d1auga_
not modelled 6.3 7
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
67d1eova1
not modelled 6.3 10
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
68c2jtcA_
not modelled 6.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:streptopain;
PDBTitle: 3d structure and backbone dynamics of spe b
69c3ckkA_
not modelled 6.2 25
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of human methyltransferase-like protein 1
70c4o2dB_
not modelled 6.1 18
PDB header:ligase
Chain: B: PDB Molecule:aspartate--trna ligase;
PDBTitle: crystal structure of aspartyl-trna synthetase from mycobacterium2 smegmatis with bound aspartic acid
71c5gnnA_
not modelled 6.1 19
PDB header:lipid binding protein
Chain: A: PDB Molecule:lipid binding protein;
PDBTitle: crystal structure of lipid binding protein nakanori at 1.6a
72c3bjuB_
not modelled 6.0 21
PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: crystal structure of tetrameric form of human lysyl-trna synthetase
73d1we6a_
not modelled 5.8 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
74d1kfia4
not modelled 5.8 17
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
75c4iohA_
not modelled 5.7 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tll1086 protein;
PDBTitle: crystal structure of the tll1086 protein from thermosynechococcus2 elongatus, northeast structural genomics consortium target ter258
76c4jqfA_
not modelled 5.7 24
PDB header:dna binding protein
Chain: A: PDB Molecule:cst complex subunit stn1;
PDBTitle: structure of the c-terminal domain of human telomeric stn1
77d1yb2a1
not modelled 5.7 18
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
78c1yb2A_
not modelled 5.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
79c1x55A_
not modelled 5.7 13
PDB header:ligase
Chain: A: PDB Molecule:asparaginyl-trna synthetase;
PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue
80c2ruhA_
not modelled 5.6 32
PDB header:peptide binding protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase mdm2;
PDBTitle: chemical shift assignments for mip and mdm2 in bound state
81d1f86a_
not modelled 5.6 18
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
82c3bbaB_
not modelled 5.5 29
PDB header:hydrolase
Chain: B: PDB Molecule:interpain a;
PDBTitle: structure of active wild-type prevotella intermedia interpain a2 cysteine protease
83d1mlaa2
not modelled 5.5 20
Fold:Ferredoxin-like
Superfamily:Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family:Probable ACP-binding domain of malonyl-CoA ACP transacylase
84d2phcb1
not modelled 5.3 11
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
85c4ex5A_
not modelled 5.3 22
PDB header:transferase
Chain: A: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase lysrs from burkholderia2 thailandensis bound to lysine

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below