Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0311_(-)_379172_380401
DateTue Jul 23 14:50:37 BST 2019
Unique Job IDed270a2e4e77ec5f
SequenceMSQSRYAGLS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:17.548 Y:12.603 Z:13.705
Model (left) based on template c2is9A_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: structure of yeast dcn-1
Confidence and coverage
Confidence: 38.6% Coverage: 3%
11 residues ( 3% of your sequence) have been modelled with 38.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2is9A_
38.6 18
PDB header:transcription
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: structure of yeast dcn-1
2c5v89A_
37.1 45
PDB header:ligase / protein binding
Chain: A: PDB Molecule:dcn1-like protein 4;
PDBTitle: structure of dcn4 pony domain bound to cul1 whb
3c4gbaA_
36.4 45
PDB header:ligase/peptide
Chain: A: PDB Molecule:dcn1-like protein 3;
PDBTitle: dcnl complex with n-terminally acetylated nedd8 e2 peptide
4c1wqeA_
34.4 57
PDB header:toxin
Chain: A: PDB Molecule:omtx3;
PDBTitle: an unusual fold for potassium channel blockers: nmr2 structure of three toxins from the scorpion opisthacanthus3 madagascariensis
5c4gaoA_
33.9 36
PDB header:ligase/peptide
Chain: A: PDB Molecule:dcn1-like protein 2;
PDBTitle: dcnl complex with n-terminally acetylated nedd8 e2 peptide
6c3bq3A_
33.7 18
PDB header:cell cycle, ligase
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: crystal structure of s. cerevisiae dcn1
7c5v88A_
33.0 36
PDB header:ligase / protein binding
Chain: A: PDB Molecule:lysozyme,dcn1-like protein 1;
PDBTitle: structure of dcn1 bound to nacm-cov
8d2cb5a_
26.7 19
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Papain-like
9c2pjpA_
26.5 13
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna
10c4l6tB_
24.9 35
PDB header:hydrolase
Chain: B: PDB Molecule:ecxb;
PDBTitle: gm1 bound form of the ecx ab5 holotoxin
11c4k7cA_
24.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase c;
PDBTitle: crystal structure of pepw from lactobacillus rhamnosis hn001 (dr20)2 determined as the selenomet derivative
12c1gngY_
24.6 58
PDB header:transferase
Chain: Y: PDB Molecule:frattide;
PDBTitle: glycogen synthase kinase-3 beta (gsk3) complex with frattide2 peptide
13c1gngX_
24.6 58
PDB header:transferase
Chain: X: PDB Molecule:frattide;
PDBTitle: glycogen synthase kinase-3 beta (gsk3) complex with frattide2 peptide
14c3bwwA_
24.3 37
PDB header:metal binding protein
Chain: A: PDB Molecule:protein of unknown function duf692/cog3220;
PDBTitle: crystal structure of a duf692 family protein (hs_1138) from2 haemophilus somnus 129pt at 2.20 a resolution
15c3zrmX_
23.0 58
PDB header:transferase/peptide
Chain: X: PDB Molecule:proto-oncogene frat1;
PDBTitle: identification of 2-(4-pyridyl)thienopyridinones as gsk-2 3beta inhibitors
16c3zrlX_
23.0 58
PDB header:transferase/peptide
Chain: X: PDB Molecule:proto-oncogene frat1;
PDBTitle: identification of 2-(4-pyridyl)thienopyridinones as gsk-3beta2 inhibitors
17c5oy4Y_
22.8 58
PDB header:transferase
Chain: Y: PDB Molecule:proto-oncogene frat1;
PDBTitle: gsk3beta complex with n-(6-(3,4-dihydroxyphenyl)-1h-pyrazolo[3,4-2 b]pyridin-3-yl)acetamide
18c3zrkX_
22.8 58
PDB header:transferase/peptide
Chain: X: PDB Molecule:proto-oncogene frat1;
PDBTitle: identification of 2-(4-pyridyl)thienopyridinones as gsk-3beta2 inhibitors
19c1wx4B_
21.9 55
PDB header:oxidoreductase/metal transport
Chain: B: PDB Molecule:melc;
PDBTitle: crystal structure of the oxy-form of the copper-bound streptomyces2 castaneoglobisporus tyrosinase complexed with a caddie protein3 prepared by the addition of dithiothreitol
20c3o0lB_
20.9 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution
21c1wqcA_
not modelled 20.3 86
PDB header:toxin
Chain: A: PDB Molecule:omtx1;
PDBTitle: an unusual fold for potassium channel blockers : nmr2 structure of three toxins from the scorpion opisthacanthus3 madagascariensis
22d1ukfa_
not modelled 20.0 45
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Avirulence protein Avrpph3
23d1v1ha1
not modelled 19.1 78
Fold:Triple beta-spiral
Superfamily:Fibre shaft of virus attachment proteins
Family:Adenovirus
24c3uueA_
not modelled 18.3 9
PDB header:hydrolase
Chain: A: PDB Molecule:lip1, secretory lipase (family 3);
PDBTitle: crystal structure of mono- and diacylglycerol lipase from malassezia2 globosa
25c1irjG_
not modelled 17.8 17
PDB header:metal binding protein
Chain: G: PDB Molecule:migration inhibitory factor-related protein 14;
PDBTitle: crystal structure of the mrp14 complexed with chaps
26c5lslF_
not modelled 16.9 19
PDB header:rna binding domain
Chain: F: PDB Molecule:cold sensitive u2 snrna suppressor 1;
PDBTitle: crystal structure of yeast hsh49p in complex with cus1p binding2 domain.
27c1wqdA_
not modelled 16.1 86
PDB header:toxin
Chain: A: PDB Molecule:omtx2;
PDBTitle: an unusual fold for potassium channel blockers: nmr2 structure of three toxins from the scorpion opisthacanthus3 madagascariensis
28c1fuiB_
not modelled 15.9 29
PDB header:isomerase
Chain: B: PDB Molecule:l-fucose isomerase;
PDBTitle: l-fucose isomerase from escherichia coli
29c2kdkA_
not modelled 15.3 9
PDB header:transcription regulator
Chain: A: PDB Molecule:aryl hydrocarbon receptor nuclear translocator-like protein
PDBTitle: structure of human circadian clock protein bmal2 c-terminal pas domain
30c4wiuA_
not modelled 14.7 25
PDB header:lyase,transferase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxykinase [gtp];
PDBTitle: crystal structure of pepck (rv0211) from mycobacterium tuberculosis in2 complex with oxalate and mn2+
31c4xb6E_
not modelled 14.6 9
PDB header:transferase
Chain: E: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase
PDBTitle: structure of the e. coli c-p lyase core complex
32c2dqbB_
not modelled 14.6 32
PDB header:hydrolase, dna binding protein
Chain: B: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase, putative;
PDBTitle: crystal structure of dntp triphosphohydrolase from thermus2 thermophilus hb8, which is homologous to dgtp triphosphohydrolase
33d1k8ua_
not modelled 14.5 21
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
34d1olza3
not modelled 14.5 71
Fold:Trefoil/Plexin domain-like
Superfamily:Plexin repeat
Family:Plexin repeat
35c4gioA_
not modelled 14.0 19
PDB header:unknown function
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of campylobacter jejuni cj0090
36c5lxyH_
not modelled 13.6 19
PDB header:rna binding protein
Chain: H: PDB Molecule:zinc finger cchc domain-containing protein 8;
PDBTitle: structure of the minimal rbm7 - zcchc8 complex
37d1pjqa3
not modelled 13.1 24
Fold:Siroheme synthase middle domains-like
Superfamily:Siroheme synthase middle domains-like
Family:Siroheme synthase middle domains-like
38c5e97B_
not modelled 12.5 35
PDB header:hydrolase
Chain: B: PDB Molecule:heparanase;
PDBTitle: glycoside hydrolase ligand structure 1
39c5b7wB_
not modelled 12.1 43
PDB header:unknown function
Chain: B: PDB Molecule:upf0234 protein xc_3703;
PDBTitle: crystal structure of the yajq-family protein xc_3703 from xanthomonas2 campestris pv.campestris
40c3c0vC_
not modelled 12.0 13
PDB header:plant protein
Chain: C: PDB Molecule:cytokinin-specific binding protein;
PDBTitle: crystal structure of cytokinin-specific binding protein in complex2 with cytokinin and ta6br12
41d1in0a2
not modelled 12.0 50
Fold:Ferredoxin-like
Superfamily:YajQ-like
Family:YajQ-like
42d1tgoa2
not modelled 11.9 36
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
43c3kf6B_
not modelled 11.8 21
PDB header:structural protein
Chain: B: PDB Molecule:protein ten1;
PDBTitle: crystal structure of s. pombe stn1-ten1 complex
44c2i7xA_
not modelled 11.8 22
PDB header:rna binding protein, protein binding
Chain: A: PDB Molecule:protein cft2;
PDBTitle: structure of yeast cpsf-100 (ydh1p)
45d2i7xa1
not modelled 11.8 22
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:beta-CASP RNA-metabolising hydrolases
46c3kevA_
not modelled 11.7 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:galieria sulfuraria dcun1 domain-containing protein;
PDBTitle: x-ray crystal structure of a dcun1 domain-containing protein from2 galdieria sulfuraria
47d3chbd_
not modelled 11.2 30
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
48c5syrA_
not modelled 11.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:probable atp synthase spal/mxib;
PDBTitle: crystal structure of atpase delta1-79 spa47 r350a
49c6qppA_
not modelled 11.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: rhizomucor miehei lipase propeptide complex, native
50c5sy5B_
not modelled 11.0 13
PDB header:transcription
Chain: B: PDB Molecule:neuronal pas domain-containing protein 1;
PDBTitle: crystal structure of the heterodimeric npas1-arnt complex
51c5mntD_
not modelled 10.7 19
PDB header:rna binding protein
Chain: D: PDB Molecule:a2 maturation protein;
PDBTitle: bacteriophage qbeta maturation protein
52c4c22B_
not modelled 10.7 11
PDB header:isomerase
Chain: B: PDB Molecule:l-fucose isomerase;
PDBTitle: l-fucose isomerase in complex with fuculose
53d1xk4a1
not modelled 10.5 17
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
54c3zdkA_
not modelled 10.5 44
PDB header:hydrolase
Chain: A: PDB Molecule:5' exonuclease apollo;
PDBTitle: crystal structure of human 5' exonuclease apollo
55d1ltrd_
not modelled 10.1 30
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
56c1v1cA_
not modelled 10.0 29
PDB header:sh3-domain
Chain: A: PDB Molecule:obscurin;
PDBTitle: solution structure of the sh3 domain of obscurin
57d2es7a1
not modelled 9.6 40
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:HyaE-like
58c1in0B_
not modelled 9.6 50
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yajq protein;
PDBTitle: yajq protein (hi1034)
59c1i3aA_
not modelled 9.4 50
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hii;
PDBTitle: rnase hii from archaeoglobus fulgidus with cobalt hexammine2 chloride
60d1i39a_
not modelled 9.4 50
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
61d2ctsa_
not modelled 9.3 27
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
62d1khba1
not modelled 9.2 25
Fold:PEP carboxykinase-like
Superfamily:PEP carboxykinase-like
Family:PEP carboxykinase C-terminal domain
63c2ycbA_
not modelled 9.1 67
PDB header:hydrolase
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor;
PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus
64c4zyeA_
not modelled 9.1 35
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of sulfolobus solfataricus o6-methylguanine2 methyltransferase
65c2apoA_
not modelled 8.9 19
PDB header:isomerase/rna binding protein
Chain: A: PDB Molecule:probable trna pseudouridine synthase b;
PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex
66c1t39A_
not modelled 8.9 35
PDB header:transferase/dna
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna
67c2vwkA_
not modelled 8.8 36
PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
68c2xr1B_
not modelled 8.8 56
PDB header:hydrolase
Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd
PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei
69c5gw8A_
not modelled 8.7 9
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical secretory lipase (family 3);
PDBTitle: crystal structure of a putative dag-like lipase (mgmdl2) from2 malassezia globosa
70c2fe3B_
not modelled 8.7 24
PDB header:dna binding protein
Chain: B: PDB Molecule:peroxide operon regulator;
PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch
71c3eerA_
not modelled 8.6 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:organic hydroperoxide resistance protein, putative;
PDBTitle: high resolution structure of putative organic hydroperoxide resistance2 protein from vibrio cholerae o1 biovar eltor str. n16961
72d1vsra_
not modelled 8.4 42
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
73d1csca_
not modelled 8.3 28
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
74c3vn5A_
not modelled 8.3 50
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hiii;
PDBTitle: crystal structure of aquifex aeolicus rnase h3
75c4py5A_
not modelled 8.2 50
PDB header:hydrolase/dna/rna
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: thermovibrio ammonificans rnase h3 in complex with 19-mer rna/dna
76c3qacA_
not modelled 8.2 10
PDB header:plant protein
Chain: A: PDB Molecule:11s globulin seed storage protein;
PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l.
77c5mjrA_
not modelled 8.2 33
PDB header:photosynthesis
Chain: A: PDB Molecule:protein thf1;
PDBTitle: structure of psb29 at 1.55a
78d1y6da_
not modelled 8.2 7
Fold:Four-helical up-and-down bundle
Superfamily:Histidine-containing phosphotransfer domain, HPT domain
Family:Phosphorelay protein luxU
79c4lb6B_
not modelled 8.2 50
PDB header:transferase/dna
Chain: B: PDB Molecule:protein kinase containing z-dna binding domains;
PDBTitle: crystal structure of pkz zalpha in complex with ds(cg)6 (tetragonal2 form)
80c3afcB_
not modelled 7.9 43
PDB header:signaling protein
Chain: B: PDB Molecule:semaphorin-6a;
PDBTitle: mouse semaphorin 6a extracellular domain
81d2apoa2
not modelled 7.9 21
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
82c5ua7A_
not modelled 7.8 46
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb2;
PDBTitle: ocellatin-lb2, solution structure in sds micelle by nmr spectroscopy
83c5u9rA_
not modelled 7.8 46
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb2;
PDBTitle: ocellatin-lb2, solution structure in tfe by nmr spectroscopy
84c5u9xA_
not modelled 7.8 46
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-k1;
PDBTitle: ocellatin-lb2
85c5u9qA_
not modelled 7.8 46
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb1;
PDBTitle: ocellatin-lb1
86c5u9vA_
not modelled 7.8 46
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb1;
PDBTitle: ocellatin-lb1, solution structure in dpc micelle by nmr spectroscopy
87c5ua6A_
not modelled 7.8 46
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-lb1;
PDBTitle: ocellatin-lb1, solution structure in sds micelle by nmr spectroscopy
88c5ua8A_
not modelled 7.7 46
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-f1;
PDBTitle: ocellatin-f1, solution structure in sds micelle by nmr spectroscopy
89c5u9yA_
not modelled 7.7 46
PDB header:antimicrobial protein
Chain: A: PDB Molecule:ocellatin-k1;
PDBTitle: ocellatin-f1
90c3kscD_
not modelled 7.7 12
PDB header:plant protein
Chain: D: PDB Molecule:lega class;
PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin from pisum2 sativum l.
91c4bhcA_
not modelled 7.7 41
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of the m. tuberculosis o6-methylguanine2 methyltransferase r37l variant
92c3qsqA_
not modelled 7.7 22
PDB header:viral protein
Chain: A: PDB Molecule:capsid polyprotein;
PDBTitle: crystal structure of the projection domain of the human astrovirus2 capsid protein
93c2p3fN_
not modelled 7.6 67
PDB header:hydrolase
Chain: N: PDB Molecule:anti-coagulant protein 5;
PDBTitle: crystal structure of the factor xa/nap5 complex
94c2qnfB_
not modelled 7.5 18
PDB header:hydrolase/dna
Chain: B: PDB Molecule:recombination endonuclease vii;
PDBTitle: crystal structure of t4 endonuclease vii h43n mutant in2 complex with heteroduplex dna containing base mismatches
95c2o8hA_
not modelled 7.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:phosphodiesterase-10a;
PDBTitle: crystal structure of the catalytic domain of rat phosphodiesterase 10a
96d1e8aa_
not modelled 7.4 25
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
97c1ye9E_
not modelled 7.4 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli
98d2aega1
not modelled 7.3 35
Fold:BB1717-like
Superfamily:BB1717-like
Family:BB1717-like
99c2aegA_
not modelled 7.3 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein agr_pat_140;
PDBTitle: x-ray crystal structure of protein atu5096 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr63.

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