Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0313_(-)_382490_382876
DateTue Jul 23 14:50:38 BST 2019
Unique Job ID87f44a22373371cd
SequenceVGDYGPFGFD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.824 Y:39.033 Z:31.661
Model (left) based on template c1f7uA_
Top template information
PDB header:ligase/rna
Chain: A: PDB Molecule:arginyl-trna synthetase;
PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg
Confidence and coverage
Confidence: 45.4% Coverage: 32%
41 residues ( 32% of your sequence) have been modelled with 45.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1f7uA_



45.4 12
PDB header:ligase/rna
Chain: A: PDB Molecule:arginyl-trna synthetase;
PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg
2c4r3zB_



30.5 20
PDB header:protein binding/ligase
Chain: B: PDB Molecule:arginine--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human argrs-glnrs-aimp1 complex
3c2jwlB_



23.8 18
PDB header:membrane protein
Chain: B: PDB Molecule:protein tolr;
PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data
4d1dmla1



21.8 38
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
5c5xmjJ_



19.6 30
PDB header:electron transport
Chain: J: PDB Molecule:succinate dehydrogenase iron-sulfur subunit;
PDBTitle: crystal structure of quinol:fumarate reductase from desulfovibrio2 gigas
6c6eacC_



19.0 71
PDB header:transferase
Chain: C: PDB Molecule:selo;
PDBTitle: pseudomonas syringae selo
7d2ffga1



17.8 15
Fold:YkuJ-like
Superfamily:YkuJ-like
Family:YkuJ-like
8c2lufA_



16.0 41
PDB header:de novo protein
Chain: A: PDB Molecule:retro trp-cage peptide;
PDBTitle: retro trp-cage peptide
9c2ys5A_



15.5 26
PDB header:signaling protein
Chain: A: PDB Molecule:fibroblast growth factor receptor substrate 3;
PDBTitle: solution structure of the complex of the ptb domain of snt-2 and 19-2 residue peptide (aa 1571-1589) of halk
10d1kf6b2



14.5 39
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
11d3etja2



14.5 33
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
12c1dmlG_



14.4 33
PDB header:dna binding protein/transferase
Chain: G: PDB Molecule:dna polymerase processivity factor;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
13c5x3lA_



14.0 43
PDB header:antimicrobial protein
Chain: A: PDB Molecule:pilosulin-1;
PDBTitle: solution structure of a novel antimicrobial peptide, p1, from jumper2 ant myrmecia pilosula
14c4ipuA_



13.2 17
PDB header:cell adhesion
Chain: A: PDB Molecule:fimu protein;
PDBTitle: crystal structure of pseudomonas aeruginosa (strain: pao1) type iv2 minor pilin fimu in space group p21
15c4d77A_



12.3 35
PDB header:signaling protein
Chain: A: PDB Molecule:gliomedin;
PDBTitle: high-resolution structure of the extracellular olfactomedin2 domain from gliomedin
16d1jl7a_



11.5 14
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
17d1jl6a_



11.5 14
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
18c2iopD_



11.5 30
PDB header:chaperone
Chain: D: PDB Molecule:chaperone protein htpg;
PDBTitle: crystal structure of full-length htpg, the escherichia coli2 hsp90, bound to adp
19c4wxuA_



11.4 35
PDB header:protein binding
Chain: A: PDB Molecule:myocilin;
PDBTitle: crystal structure of the selenomthionine incorporated myocilin2 olfactomedin domain e396d variant.
20d1xr0b_



11.1 22
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Phosphotyrosine-binding domain (PTB)
21c2yt2A_



not modelled 10.9 24
PDB header:signaling protein
Chain: A: PDB Molecule:fibroblast growth factor receptor substrate 3 and alk
PDBTitle: solution structure of the chimera of the ptb domain of snt-2 and 19-2 residue peptide (aa 1571-1589) of halk
22c5amoA_



not modelled 10.9 23
PDB header:signaling protein
Chain: A: PDB Molecule:noelin;
PDBTitle: structure of a mouse olfactomedin-1 disulfide-linked dimer of the2 olfactomedin domain and part of the coiled coil
23d1a6ma_



not modelled 10.7 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
24c3cm8A_



not modelled 10.3 25
PDB header:rna binding protein/transferase
Chain: A: PDB Molecule:polymerase acidic protein;
PDBTitle: a rna polymerase subunit structure from virus
25c4rdqA_



not modelled 10.1 60
PDB header:transport protein
Chain: A: PDB Molecule:bestrophin-1;
PDBTitle: calcium-activated chloride channel bestrophin-1, from chicken, in2 complex with fab antibody fragments, chloride and calcium
26c2bs2E_



not modelled 9.5 11
PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
27d1a9we_



not modelled 9.4 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
28c6en3A_



not modelled 9.1 41
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase f2,multifunctional-
PDBTitle: crystal structure of full length endos from streptococcus pyogenes in2 complex with g2 oligosaccharide.
29c5by4A_



not modelled 9.1 26
PDB header:protein transport
Chain: A: PDB Molecule:protein tolr;
PDBTitle: structure and function of the escherichia coli tol-pal stator protein2 tolr
30d1hbga_



not modelled 9.1 14
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
31c5d9aD_



not modelled 9.0 29
PDB header:viral protein
Chain: D: PDB Molecule:polymerase acidic protein;
PDBTitle: influenza c virus rna-dependent rna polymerase - space group p212121
32c6eslB_



not modelled 8.3 27
PDB header:hydrolase
Chain: B: PDB Molecule:bacterial leucyl aminopeptidase;
PDBTitle: crystal structure of the legionella pneumoppila lapa
33c3iaxB_



not modelled 8.3 75
PDB header:protein transport
Chain: B: PDB Molecule:colicin-a;
PDBTitle: the crystal structure of the tolb box of colicin a in complex with2 tolb reveals important differences in the recruitment of the common3 tolb translocation portal used by group a colicins
34d1hbrb_



not modelled 8.3 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
35d3bj1b1



not modelled 8.2 12
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
36d1a4fb_



not modelled 8.2 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
37d1gcvb_



not modelled 8.2 20
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
38d1fsla_



not modelled 8.1 12
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
39c4dnhA_



not modelled 7.8 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of hypothetical protein smc04132 from sinorhizobium2 meliloti 1021
40d1qpwb_



not modelled 7.7 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
41c3mkbD_



not modelled 7.7 15
PDB header:oxygen storage, oxygen transport
Chain: D: PDB Molecule:hemoglobin subunit beta;
PDBTitle: crystal structure determination of shortfin mako (isurus oxyrinchus)2 hemoglobin at 1.9 angstrom resolution
42d2dn3b1



not modelled 7.6 13
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
43c3d5cX_



not modelled 7.5 36
PDB header:ribosome
Chain: X: PDB Molecule:peptide chain release factor 1;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400.
44c2bu8A_



not modelled 7.5 31
PDB header:transferase
Chain: A: PDB Molecule:pyruvate dehydrogenase kinase isoenzyme 2;
PDBTitle: crystal structures of human pyruvate dehydrogenase kinase 2 containing2 physiological and synthetic ligands
45d2aa1b1



not modelled 7.4 12
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
46d1v4wb_



not modelled 7.4 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
47d1jebb_



not modelled 7.4 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
48d1v0ea2



not modelled 7.0 38
Fold:Triple-stranded beta-helix
Superfamily:Phage fibre proteins
Family:Endo-alpha-sialidase
49c1s2nB_



not modelled 7.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:extracellular subtilisin-like serine proteinase;
PDBTitle: crystal structure of a cold adapted subtilisin-like serine proteinase
50c2bk9A_



not modelled 7.0 21
PDB header:oxygen transport
Chain: A: PDB Molecule:cg9734-pa;
PDBTitle: drosophila melanogaster globin
51d1rq0a_



not modelled 6.9 28
Fold:Release factor
Superfamily:Release factor
Family:Release factor
52d1a4fa_



not modelled 6.9 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
53c5iauD_



not modelled 6.9 20
PDB header:hydrolase
Chain: D: PDB Molecule:dipeptidase;
PDBTitle: a c69-family cysteine dipeptidase from lactobacillus farciminis
54d1cg5b_



not modelled 6.8 13
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
55c4uzzB_



not modelled 6.8 25
PDB header:motor protein
Chain: B: PDB Molecule:intraflagellar transporter-like protein;
PDBTitle: crystal structure of the ttift52-46 complex
56c4wrtA_



not modelled 6.8 29
PDB header:transferase/rna
Chain: A: PDB Molecule:pa;
PDBTitle: crystal structure of influenza b polymerase with bound vrna promoter2 (form flub2)
57d3d1kb1



not modelled 6.7 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
58d1qpwa_



not modelled 6.6 13
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
59d2h8fb1



not modelled 6.5 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
60c3dwlI_



not modelled 6.4 17
PDB header:structural protein
Chain: I: PDB Molecule:actin-related protein 2/3 complex subunit 2;
PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
61c2lpbB_



not modelled 6.4 12
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure of the complex of the central activation domain of gcn42 bound to the mediator co-activator domain 1 of gal11/med15
62c3bjxB_



not modelled 6.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi;
PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3
63c2wa0A_



not modelled 6.3 29
PDB header:immune system
Chain: A: PDB Molecule:melanoma-associated antigen 4;
PDBTitle: crystal structure of the human magea4
64d1scta_



not modelled 6.2 23
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
65c3k90C_



not modelled 6.2 29
PDB header:hormone receptor, hydrolase regulator
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: the abscisic acid receptor pyr1 in complex with abscisic acid
66c4biuB_



not modelled 6.1 35
PDB header:transferase
Chain: B: PDB Molecule:sensor protein cpxa;
PDBTitle: crystal structure of cpxahdc (orthorhombic form 1)
67c6gcsR_



not modelled 6.1 14
PDB header:oxidoreductase
Chain: R: PDB Molecule:ni2m subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
68d1ch4a_



not modelled 6.1 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
69c3crlB_



not modelled 6.0 24
PDB header:transferase
Chain: B: PDB Molecule:pyruvate dehydrogenase [lipoamide] kinase isozyme 2,
PDBTitle: crystal structure of the pdhk2-l2 complex.
70d1hdsb_



not modelled 6.0 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
71c6oawA_



not modelled 6.0 24
PDB header:immune system
Chain: A: PDB Molecule:wyl1;
PDBTitle: crystal structure of a crispr cas-related protein
72d2d5xa1



not modelled 6.0 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
73c3a0rA_



not modelled 6.0 18
PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
74d3e11a1



not modelled 5.9 41
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:TTHA0227-like
75c2ihr1_



not modelled 5.9 32
PDB header:translation
Chain: 1: PDB Molecule:peptide chain release factor 2;
PDBTitle: rf2 of thermus thermophilus
76d1i3da_



not modelled 5.7 14
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
77c5afbA_



not modelled 5.7 35
PDB header:signaling protein
Chain: A: PDB Molecule:latrophilin-3;
PDBTitle: crystal structure of the latrophilin3 lectin and2 olfactomedin domains
78d1shrb_



not modelled 5.6 13
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
79d1f3ta2



not modelled 5.6 10
Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
80c2rsmA_



not modelled 5.4 20
PDB header:translation
Chain: A: PDB Molecule:probable peptide chain release factor c12orf65 homolog,
PDBTitle: solution structure and sirna-mediated knockdown analysis of the2 mitochondrial disease-related protein c12orf65 (ict2)
81c4l67B_



not modelled 5.4 36
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pak 4;
PDBTitle: crystal structure of catalytic domain of pak4
82d1lnza1



not modelled 5.4 16
Fold:Obg-fold
Superfamily:Obg GTP-binding protein N-terminal domain
Family:Obg GTP-binding protein N-terminal domain
83d1ecda_



not modelled 5.3 18
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
84c4n2xF_



not modelled 5.3 22
PDB header:hydrolase
Chain: F: PDB Molecule:dl-2-haloacid dehalogenase;
PDBTitle: crystal structure of dl-2-haloacid dehalogenase
85c4v0pA_



not modelled 5.3 24
PDB header:immune system
Chain: A: PDB Molecule:melanoma-associated antigen 3;
PDBTitle: crystal structure of the mage homology domain of human mage-a3
86d1cqxa1



not modelled 5.2 10
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
87c4biyD_



not modelled 5.2 35
PDB header:transferase
Chain: D: PDB Molecule:sensor protein cpxa;
PDBTitle: crystal structure of cpxahdc (monoclinic form 2)
88d1spga_



not modelled 5.1 13
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
89c3s1jC_



not modelled 5.1 8
PDB header:oxygen transport, oxygen storage
Chain: C: PDB Molecule:hemoglobin-like flavoprotein;
PDBTitle: crystal structure of acetate-bound hell's gate globin i
90d1jdqa_



not modelled 5.0 45
Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like
91c3nw0B_



not modelled 5.0 24
PDB header:metal binding protein
Chain: B: PDB Molecule:melanoma-associated antigen g1;
PDBTitle: crystal structure of mageg1 and nse1 complex
92d1u84a_



not modelled 5.0 50
Fold:YugE-like
Superfamily:YugE-like
Family:YugE-like

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