Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0316_(-)_384535_385149
DateTue Jul 23 14:50:38 BST 2019
Unique Job IDf822e8a3d4fb1fd1
SequenceMEFLVTMTTR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.786 Y:26.893 Z:37.855
Model (left) based on template d1mlia_
Top template information
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Muconalactone isomerase, MLI
Confidence and coverage
Confidence:100.0% Coverage: 44%
90 residues ( 44% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1mlia_



100.0 26
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Muconalactone isomerase, MLI
2c3znuI_



100.0 38
PDB header:lyase
Chain: I: PDB Molecule:5-chloromuconolactone dehalogenase;
PDBTitle: crystal structure of clcf in crystal form 2
3d1s7ia_



68.2 22
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:DGPF domain (Pfam 04946)
4c4lbhA_



66.0 22
PDB header:lyase
Chain: A: PDB Molecule:5-chloro-2-hydroxyhydroquinone dehydrochlorinase (tftg);
PDBTitle: 5-chloro-2-hydroxyhydroquinone dehydrochlorinase (tftg) from2 burkholderia phenoliruptrix ac1100: apo-form
5d2cfxa2



57.9 9
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
6d1vpra1



39.3 43
Fold:Lipocalins
Superfamily:Lipocalins
Family:Dinoflagellate luciferase repeat
7d8ruca2



39.1 28
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
8d1mwqa_



37.0 14
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:YciI-like
9d1gk8a2



36.2 28
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
10d1bxna2



35.4 23
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
11c2n3zA_



34.7 15
PDB header:structural genomics, de novo protein
Chain: A: PDB Molecule:or446;
PDBTitle: solution nmr structure of de novo designed protein, rossmann2x2 fold,2 northeast structural genomics consortium (nesg) target or446
12d1rbla2



34.2 31
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
13d1bwva2



31.9 23
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
14d1svda2



31.3 26
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
15d1p9qc3



24.3 16
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:Hypothetical protein AF0491, C-terminal domain
16c1bwvA_



23.9 23
PDB header:lyase
Chain: A: PDB Molecule:protein (ribulose bisphosphate carboxylase);
PDBTitle: activated ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco)2 complexed with the reaction intermediate analogue 2-carboxyarabinitol3 1,5-bisphosphate
17c3we7A_



23.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ph0499;
PDBTitle: crystal structure of diacetylchitobiose deacetylase from pyrococcus2 horikoshii
18c5bmoB_



20.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein lnmx;
PDBTitle: lnmx protein, a putative glcnac-pi de-n-acetylase from streptomyces2 atroolivaceus
19d1wdda2



18.3 31
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
20c4exqA_



16.2 18
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase (upd) from2 burkholderia thailandensis e264
21c5cgzA_



not modelled 16.2 21
PDB header:lyase
Chain: A: PDB Molecule:4-oxalmesaconate hydratase;
PDBTitle: crystal structure of galb, the 4-carboxy-2-hydroxymuconate hydratase,2 from pseuodomonas putida kt2440
22d1q7sa_



not modelled 16.2 23
Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
23d1geha2



not modelled 15.6 19
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
24d1x1na1



not modelled 15.5 21
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
25d1t95a3



not modelled 15.4 16
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:Hypothetical protein AF0491, C-terminal domain
26c4oi6A_



not modelled 13.9 9
PDB header:metal binding protein
Chain: A: PDB Molecule:nickel responsive protein;
PDBTitle: crystal structure analysis of nickel-bound form sco4226 from2 streptomyces coelicolor a3(2)
27c2zv3E_



not modelled 13.6 15
PDB header:hydrolase
Chain: E: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661
28d1tz7a1



not modelled 13.5 24
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
29c5m6qA_



not modelled 12.3 36
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kutzneria albida transglutaminase
30d1eswa_



not modelled 11.5 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
31c3mlhA_



not modelled 11.3 28
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of the 2009 h1n1 influenza virus hemagglutinin2 receptor-binding domain
32c2ixdB_



not modelled 11.2 21
PDB header:hydrolase
Chain: B: PDB Molecule:lmbe-related protein;
PDBTitle: crystal structure of the putative deacetylase bc1534 from bacillus2 cereus
33d1iyjb4



not modelled 11.0 45
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
34c2e1aD_



not modelled 10.8 22
PDB header:transcription
Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc;
PDBTitle: crystal structure of ffrp-dm1
35c2wzoA_



not modelled 10.7 22
PDB header:cell cycle
Chain: A: PDB Molecule:transforming growth factor beta regulator 1;
PDBTitle: the structure of the fyr domain
36c3c8dA_



not modelled 10.7 14
PDB header:hydrolase
Chain: A: PDB Molecule:enterochelin esterase;
PDBTitle: crystal structure of the enterobactin esterase fes from2 shigella flexneri in the presence of 2,3-di-hydroxy-n-3 benzoyl-glycine
37c3w66A_



not modelled 10.3 19
PDB header:metal transport
Chain: A: PDB Molecule:magnetosome protein mamm;
PDBTitle: mamm-ctd d249a and h285a
38c5zx1A_



not modelled 9.9 28
PDB header:transcription
Chain: A: PDB Molecule:ent;
PDBTitle: crystal structure of ent domain from t. brucei
39d1t1ja_



not modelled 9.6 24
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:Hypothetical protein PA1492
40d1vqod1



not modelled 9.1 25
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
41c3g36D_



not modelled 9.0 35
PDB header:nuclear protein
Chain: D: PDB Molecule:protein dpy-30 homolog;
PDBTitle: crystal structure of the human dpy-30-like c-terminal domain
42d2puza1



not modelled 9.0 23
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Imidazolonepropionase-like
43c2m09A_



not modelled 8.9 13
PDB header:transcription
Chain: A: PDB Molecule:splicing factor 1;
PDBTitle: structure, phosphorylation and u2af65 binding of the nterminal domain2 of splicing factor 1 during 3 splice site recognition
44d1xbwa_



not modelled 8.7 16
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PG130-like
45c2vsaA_



not modelled 8.7 25
PDB header:toxin
Chain: A: PDB Molecule:mosquitocidal toxin;
PDBTitle: structure and mode of action of a mosquitocidal holotoxin
46c3ez1A_



not modelled 8.2 22
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase mocr family;
PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution
47c4ogeA_



not modelled 8.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease domain protein;
PDBTitle: crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
48c5macD_



not modelled 8.1 16
PDB header:lyase
Chain: D: PDB Molecule:ribulose-1,5-bisphosphate carboxylase-oxygenase type iii;
PDBTitle: crystal structure of decameric methanococcoides burtonii rubisco2 complexed with 2-carboxyarabinitol bisphosphate
49c3zm8A_



not modelled 8.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:gh26 endo-beta-1,4-mannanase;
PDBTitle: crystal structure of podospora anserina gh26-cbm352 beta-(1,4)-mannanase
50d2ikba1



not modelled 8.0 63
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:NMB1012-like
51d1vzia1



not modelled 7.9 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Superoxide reductase-like
Family:Superoxide reductase-like
52d2q09a1



not modelled 7.9 35
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Imidazolonepropionase-like
53c1gehE_



not modelled 7.8 19
PDB header:lyase
Chain: E: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase;
PDBTitle: crystal structure of archaeal rubisco (ribulose 1,5-bisphosphate2 carboxylase/oxygenase)
54c2djwF_



not modelled 7.6 16
PDB header:unknown function
Chain: F: PDB Molecule:probable transcriptional regulator, asnc family;
PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8
55d1dfxa1



not modelled 7.5 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Superoxide reductase-like
Family:Superoxide reductase-like
56c3cyvA_



not modelled 7.1 13
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism
57c3j1zP_



not modelled 6.9 9
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
58d2nr7a1



not modelled 6.8 38
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:NMB1012-like
59c5ho5D_



not modelled 6.7 15
PDB header:metal transport
Chain: D: PDB Molecule:magnetosome protein mamb;
PDBTitle: mamb
60c5vfkA_



not modelled 6.6 29
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of an archaeal duf61 family protein sso0941
61c2d3kA_



not modelled 6.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3
62d1r3sa_



not modelled 6.6 11
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Uroporphyrinogen decarboxylase, UROD
63c1rcxH_



not modelled 6.6 28
PDB header:lyase (carbon-carbon)
Chain: H: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase;
PDBTitle: non-activated spinach rubisco in complex with its substrate2 ribulose-1,5-bisphosphate
64c6c23C_



not modelled 6.4 26
PDB header:gene regulation
Chain: C: PDB Molecule:histone-lysine n-methyltransferase ezh2;
PDBTitle: cryo-em structure of prc2 bound to cofactors aebp2 and jarid2 in the2 compact active state
65c4f15D_



not modelled 6.2 28
PDB header:immune system
Chain: D: PDB Molecule:hemagglutinin;
PDBTitle: molecular basis of infectivity of 2009 pandemic h1n1 influenza a2 viruses
66c5nhuJ_



not modelled 6.1 38
PDB header:hydrolase
Chain: J: PDB Molecule:agap008004-pa;
PDBTitle: human alpha thrombin complexed with anopheles gambiae ce52 anticoagulant
67d1s0pa_



not modelled 6.1 45
Fold:N-terminal domain of adenylylcyclase associated protein, CAP
Superfamily:N-terminal domain of adenylylcyclase associated protein, CAP
Family:N-terminal domain of adenylylcyclase associated protein, CAP
68c4fayC_



not modelled 6.0 20
PDB header:glycerol-binding protein
Chain: C: PDB Molecule:microcompartments protein;
PDBTitle: crystal structure of a trimeric bacterial microcompartment shell2 protein pdub with glycerol metabolites
69d2d69a2



not modelled 5.9 18
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
70d1rlka_



not modelled 5.9 15
Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
71c6hpfA_



not modelled 5.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:endo-b-mannanase;
PDBTitle: structure of inactive e165q mutant of fungal non-cbm carrying gh262 endo-b-mannanase from yunnania penicillata in complex with alpha-62-3 61-di-galactosyl-mannotriose
72c5nhuI_



not modelled 5.9 75
PDB header:hydrolase
Chain: I: PDB Molecule:agap008004-pa;
PDBTitle: human alpha thrombin complexed with anopheles gambiae ce52 anticoagulant
73c1jpkA_



not modelled 5.8 11
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase
74c5iohB_



not modelled 5.7 33
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:cell division cycle-associated protein 2;
PDBTitle: repoman-pp1a (protein phosphatase 1, alpha isoform) holoenzyme complex
75c1xtyD_



not modelled 5.7 18
PDB header:hydrolase
Chain: D: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna hydrolase
76d2cyya2



not modelled 5.6 16
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
77d3bypa1



not modelled 5.6 19
Fold:Alpha-lytic protease prodomain-like
Superfamily:Cation efflux protein cytoplasmic domain-like
Family:Cation efflux protein cytoplasmic domain-like
78c6qekB_



not modelled 5.5 18
PDB header:transport protein
Chain: B: PDB Molecule:magnetosome protein;
PDBTitle: putative membrane tansporter, magnetosome protein mamm ctd2 [desulfamplus magnetovallimortis bw-1]
79c2zztA_



not modelled 5.4 12
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the cytosolic domain of the cation2 diffusion facilitator family protein
80d3c8da2



not modelled 5.4 14
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carboxylesterase
81d1sdwa1



not modelled 5.2 15
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:PHM/PNGase F
Family:Peptidylglycine alpha-hydroxylating monooxygenase, PHM
82d1k4ia_



not modelled 5.2 18
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
83c5j28C_



not modelled 5.2 33
PDB header:hydrolase/protein binding
Chain: C: PDB Molecule:antigen ki-67;
PDBTitle: ki67-pp1g (protein phosphatase 1, gamma isoform) holoenzyme complex
84c3di4A_



not modelled 5.2 24
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf1989;
PDBTitle: crystal structure of a duf1989 family protein (spo0365) from2 silicibacter pomeroyi dss-3 at 1.60 a resolution
85d1uzhc1



not modelled 5.1 30
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
86c3oruA_



not modelled 5.1 14
PDB header:metal binding protein
Chain: A: PDB Molecule:duf1989 family protein;
PDBTitle: crystal structure of a duf1989 family protein (tm1040_0329) from2 silicibacter sp. tm1040 at 1.11 a resolution

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