Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0321_(dcd)_388582_389154
DateTue Jul 23 14:50:39 BST 2019
Unique Job ID4cd99af8b2ddf1f6
SequenceVLLSDRDLRA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.116 Y:45.190 Z:48.899
Model (left) based on template c2qxxA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:deoxycytidine triphosphate deaminase;
PDBTitle: bifunctional dctp deaminase: dutpase from mycobacterium tuberculosis2 in complex with dttp
Confidence and coverage
Confidence:100.0% Coverage: 99%
189 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qxxA_



100.0 99
PDB header:hydrolase
Chain: A: PDB Molecule:deoxycytidine triphosphate deaminase;
PDBTitle: bifunctional dctp deaminase: dutpase from mycobacterium tuberculosis2 in complex with dttp
2d1xs1a_



100.0 43
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
3c4xjcD_



100.0 37
PDB header:hydrolase
Chain: D: PDB Molecule:deoxycytidine triphosphate deaminase;
PDBTitle: dctp deaminase-dutpase from bacillus halodurans
4c2qlpC_



100.0 99
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidine triphosphate deaminase;
PDBTitle: bifunctional dctp deaminase:dutpase from mycobacterium tuberculosis,2 apo form
5c2r9qD_



100.0 25
PDB header:hydrolase
Chain: D: PDB Molecule:2'-deoxycytidine 5'-triphosphate deaminase;
PDBTitle: crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from2 agrobacterium tumefaciens
6d1pkha_



100.0 35
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
7c2yzjB_



100.0 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:167aa long hypothetical dutpase;
PDBTitle: crystal structure of dctp deaminase from sulfolobus tokodaii
8c3km3B_



100.0 28
PDB header:hydrolase
Chain: B: PDB Molecule:deoxycytidine triphosphate deaminase;
PDBTitle: crystal structure of eoxycytidine triphosphate deaminase from2 anaplasma phagocytophilum at 2.1a resolution
9c4dhkB_



100.0 29
PDB header:hydrolase
Chain: B: PDB Molecule:deoxycytidine triphosphate deaminase;
PDBTitle: crystal structure of a deoxycytidine triphosphate deaminase (dctp2 deaminase) from burkholderia thailandensis
10d1duna_



99.9 28
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
11c3mbqC_



99.9 24
PDB header:hydrolase
Chain: C: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: crystal structure of deoxyuridine 5-triphosphate nucleotidohydrolase2 from brucella melitensis, orthorhombic crystal form
12d1f7ra_



99.9 32
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
13c3ehwA_



99.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:dutp pyrophosphatase;
PDBTitle: human dutpase in complex with alpha,beta-imido-dutp and mg2+:2 visualization of the full-length c-termini in all monomers and3 suggestion for an additional metal ion binding site
14d1sixa_



99.9 29
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
15c6maiA_



99.9 27
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: crystal structure of deoxyuridine 5'-triphosphate nucleotidohydrolase2 from legionella pneumophila philadelphia 1
16c3tqzA_



99.9 32
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)2 from coxiella burnetii
17c3so2A_



99.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: chlorella dutpase
18c3ca9A_



99.9 25
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine triphosphatase;
PDBTitle: evolution of chlorella virus dutpase
19d1euwa_



99.9 24
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
20d1rnja_



99.9 26
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
21c3c3iA_



not modelled 99.9 25
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine triphosphatase;
PDBTitle: evolution of chlorella virus dutpase
22c3f4fB_



not modelled 99.9 22
PDB header:hydrolase
Chain: B: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: crystal structure of dut1p, a dutpase from saccharomyces cerevisiae
23c2okdB_



not modelled 99.9 27
PDB header:hydrolase
Chain: B: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: high resolution crystal structures of vaccinia virus dutpase
24d3ehwa1



not modelled 99.9 23
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
25d1sjna_



not modelled 99.9 31
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
26d1f7da_



not modelled 99.9 34
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
27d1q5uz_



not modelled 99.9 25
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
28c3lqwA_



not modelled 99.9 31
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: crystal structure of deoxyuridine 5-triphosphate2 nucleotidohydrolase from entamoeba histolytica
29d1vyqa1



not modelled 99.9 23
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
30c3h6xA_



not modelled 99.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:dutpase;
PDBTitle: crystal structure of dutpase from streptococcus mutans
31c2p9oB_



not modelled 99.9 21
PDB header:hydrolase
Chain: B: PDB Molecule:dutp pyrophosphatase-like protein;
PDBTitle: structure of dutpase from arabidopsis thaliana
32c2bazA_



not modelled 99.9 21
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein bsu20020;
PDBTitle: structure of yoss, a putative dutpase from bacillus subtilis
33c5vjyC_



not modelled 99.9 21
PDB header:hydrolase
Chain: C: PDB Molecule:dutp pyrophosphatase;
PDBTitle: crystal structure of dutp pyrophosphatase protein, from naegleria2 fowleri
34c3zf6A_



not modelled 99.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:dutpase;
PDBTitle: phage dutpases control transfer of virulence genes by a proto-2 oncogenic g protein-like mechanism. (staphylococcus bacteriophage3 80alpha dutpase d81a d110c s168c mutant with dupnhpp).
35c2d4nA_



not modelled 99.9 30
PDB header:hydrolase
Chain: A: PDB Molecule:du;
PDBTitle: crystal structure of m-pmv dutpase complexed with dupnpp, substrate2 analogue
36c5y5pB_



not modelled 99.9 26
PDB header:viral protein
Chain: B: PDB Molecule:wsv112;
PDBTitle: crystal structure of the dutpase of white spot syndrome virus in2 complex with du,ppi and mg2+
37c3ecyA_



not modelled 99.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:cg4584-pa, isoform a (bcdna.ld08534);
PDBTitle: crystal structural analysis of drosophila melanogaster dutpase
38d2bsya2



not modelled 99.8 24
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
39d2bsya1



not modelled 99.8 26
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
40c2bt1A_



not modelled 99.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: epstein barr virus dutpase in complex with a,b-imino dutp
41c3p43A_



not modelled 28.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and activities of archaeal members of the ligd 3'2 phosphoesterase dna repair enzyme superfamily
42d1tula_



not modelled 25.6 15
Fold:beta-clip
Superfamily:Tlp20, baculovirus telokin-like protein
Family:Tlp20, baculovirus telokin-like protein
43d1vioa2



not modelled 25.2 14
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
44c5dmpA_



not modelled 21.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the archaeal nhej phosphoesterase from methanocella2 paludicola.
45c3n9dA_



not modelled 20.7 26
PDB header:ligase
Chain: A: PDB Molecule:probable atp-dependent dna ligase;
PDBTitle: monoclinic structure of p. aeruginosa ligd phosphoesterase domain
46c1dm9A_



not modelled 20.1 13
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka intergenic
PDBTitle: heat shock protein 15 kd
47d1dm9a_



not modelled 20.1 13
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Heat shock protein 15 kD
48c4mqdB_



not modelled 17.0 13
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:dna-entry nuclease inhibitor;
PDBTitle: crystal structure of comj, inhibitor of the dna degrading activity of2 nuca, from bacillus subtilis
49d1vqop1



not modelled 14.6 17
Fold:Ribosomal protein L19 (L19e)
Superfamily:Ribosomal protein L19 (L19e)
Family:Ribosomal protein L19 (L19e)
50c1kskA_



not modelled 13.8 17
PDB header:lyase
Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a;
PDBTitle: structure of rsua
51c3j21Q_



not modelled 13.7 21
PDB header:ribosome
Chain: Q: PDB Molecule:50s ribosomal protein l19e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
52c2istA_



not modelled 13.4 10
PDB header:isomerase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d;
PDBTitle: crystal structure of rlud from e. coli
53c4a17O_



not modelled 12.3 22
PDB header:ribosome
Chain: O: PDB Molecule:rpl19;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
54d2visc_



not modelled 12.1 19
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
55c3iz5T_



not modelled 11.3 22
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
56c4a1eO_



not modelled 11.0 22
PDB header:ribosome
Chain: O: PDB Molecule:rpl19;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
57c4b6aR_



not modelled 10.9 17
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l19-b;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
58d2viua_



not modelled 10.7 19
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
59c4a1cO_



not modelled 10.3 21
PDB header:ribosome
Chain: O: PDB Molecule:rpl19;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
60c3p4hA_



not modelled 10.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna ligase, n-terminal domain protein;
PDBTitle: structures of archaeal members of the ligd 3'-phosphoesterase dna2 repair enzyme superfamily
61c3j39R_



not modelled 10.1 26
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l19;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
62d1mqma_



not modelled 9.9 19
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
63c5hmqE_



not modelled 9.8 31
PDB header:lyase
Chain: E: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase;
PDBTitle: xylose isomerase-like tim barrel/4-hydroxyphenylpyruvate dioxygenase2 fusion protein
64c3zf7T_



not modelled 9.7 28
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l19, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
65c1ha0A_



not modelled 9.0 19
PDB header:viral protein
Chain: A: PDB Molecule:protein (hemagglutinin precursor);
PDBTitle: hemagglutinin precursor ha0
66c5z81A_



not modelled 8.9 11
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 15;
PDBTitle: trimeric structure of vibrio cholerae heat shock protein 15 at 2.32 angstrom resolution
67c2ahqA_



not modelled 8.6 12
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: solution structure of the c-terminal rpon domain of sigma-2 54 from aquifex aeolicus
68c4uj3B_



not modelled 8.6 12
PDB header:transport protein
Chain: B: PDB Molecule:rab-3a-interacting protein;
PDBTitle: crystal structure of human rab11-rabin8-fip3
69c3mpbA_



not modelled 8.3 17
PDB header:isomerase
Chain: A: PDB Molecule:sugar isomerase;
PDBTitle: z5688 from e. coli o157:h7 bound to fructose
70c5oy0m_



not modelled 7.0 33
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
71c5oy09_



not modelled 7.0 33
PDB header:photosynthesis
Chain: 9: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
72c6hqbM_



not modelled 7.0 33
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: monomeric cyanobacterial photosystem i
73c5oy0M_



not modelled 7.0 33
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
74c4l6vM_



not modelled 7.0 33
PDB header:electron transport
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
75c4l6v7_



not modelled 7.0 33
PDB header:electron transport
Chain: 7: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
76d1v54b1



not modelled 6.9 27
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
77c2zkrp_



not modelled 6.7 28
PDB header:ribosomal protein/rna
Chain: P: PDB Molecule:rna expansion segment es31 part i;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
78c2wwaJ_



not modelled 6.6 20
PDB header:ribosome
Chain: J: PDB Molecule:60s ribosomal protein l19;
PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the yeast 80s2 ribosome
79c5dudB_



not modelled 6.5 36
PDB header:unknown function
Chain: B: PDB Molecule:ybgj;
PDBTitle: crystal structure of e. coli ybgjk
80c5olpB_



not modelled 6.4 20
PDB header:hydrolase
Chain: B: PDB Molecule:pectate lyase;
PDBTitle: galacturonidase
81c2psbA_



not modelled 6.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yerb protein;
PDBTitle: crystal structure of yerb protein from bacillus subtilis. northeast2 structural genomics target sr586
82d2psba1



not modelled 6.4 18
Fold:YerB-like
Superfamily:YerB-like
Family:YerB-like
83d2q02a1



not modelled 5.8 21
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
84d1g6ea_



not modelled 5.5 28
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Antifungal protein AFP1
85d1uwfa1



not modelled 5.5 19
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Pilus subunits
86d1zx5a1



not modelled 5.3 17
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Type I phosphomannose isomerase

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