Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0340_(-)_408634_409173
DateTue Jul 23 14:50:41 BST 2019
Unique Job ID9a80e3f9c0a48f63
SequenceVANSLLDFVI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.941 Y:25.593 Z:17.965
Model (left) based on template d1b4ua_
Top template information
Fold:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Superfamily:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Family:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Confidence and coverage
Confidence: 67.8% Coverage: 18%
32 residues ( 18% of your sequence) have been modelled with 67.8% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1b4ua_
67.8 31
Fold:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Superfamily:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Family:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
2c1wd6B_
62.7 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ydhr;
PDBTitle: crystal structure of jw1657 from escherichia coli
3c2jt1A_
62.4 27
PDB header:transcription
Chain: A: PDB Molecule:pefi protein;
PDBTitle: solution nmr structure of pefi (plasmid-encoded fimbriae regulatory)2 protein from salmonella typhimurium. northeast structural genomics3 target str82
4d2hiqa1
51.2 18
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Hypothetical protein YdhR
5c2llwA_
25.0 22
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein sti1;
PDBTitle: solution structure of the yeast sti1 dp2 domain
6c3jtgA_
18.0 25
PDB header:transcription
Chain: A: PDB Molecule:ets-related transcription factor elf-3;
PDBTitle: crystal structure of mouse elf3 c-terminal dna-binding domain in2 complex with type ii tgf-beta receptor promoter dna
7c3qyhG_
16.2 34
PDB header:lyase
Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit;
PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida.
8d1v29a_
16.0 22
Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
9d2qdya1
14.8 13
Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
10c4bjsC_
13.5 63
PDB header:cell cycle
Chain: C: PDB Molecule:telomere length regulator protein rif1;
PDBTitle: crystal structure of the rif1 c-terminal domain (rif1-ctd)2 from saccharomyces cerevisiae
11c3wrbB_
13.4 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:gallate dioxygenase;
PDBTitle: crystal structure of the anaerobic h124f desb-gallate complex
12d1yo5c1
10.9 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
13d1ugpa_
10.2 22
Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
14d1bc8c_
9.4 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
15c5zcnA_
9.1 56
PDB header:unknown function
Chain: A: PDB Molecule:brevunsin;
PDBTitle: solution nmr structure of a new lasso peptide brevunsin
16d1wwxa1
8.4 46
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
17c6n7oA_
8.3 50
PDB header:viral protein
Chain: A: PDB Molecule:gil01 gp7;
PDBTitle: crystal structure of gil01 gp7
18d2stta_
8.2 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
19c2lnmA_
8.1 13
PDB header:protein transport
Chain: A: PDB Molecule:protein tic 40, chloroplastic;
PDBTitle: solution structure of the c-terminal np-repeat domain of tic40, a co-2 chaperone during protein import into chloroplasts
20c1vw4d_
7.8 56
PDB header:ribosome
Chain: D: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
21c5w3gA_
not modelled 7.8 33
PDB header:dna binding protein
Chain: A: PDB Molecule:transcription factor pu.1;
PDBTitle: solution structure of ets transcription factor pu.1
22c6n7oB_
not modelled 7.8 50
PDB header:viral protein
Chain: B: PDB Molecule:gil01 gp7;
PDBTitle: crystal structure of gil01 gp7
23c4avpD_
not modelled 7.8 38
PDB header:transcription
Chain: D: PDB Molecule:ets translocation variant 1;
PDBTitle: crystal structure of the dna-binding domain of human etv1.
24c2daoA_
not modelled 7.4 38
PDB header:dna binding protein
Chain: A: PDB Molecule:transcription factor etv6;
PDBTitle: solution structure of ets domain transcriptional factor2 etv6 protein
25d1awca_
not modelled 7.2 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
26d1gvja_
not modelled 6.7 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
27d1k78b_
not modelled 6.5 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
28d1flia_
not modelled 6.2 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
29d1puee_
not modelled 5.8 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ets domain
30c5fn1A_
not modelled 5.7 22
PDB header:virus
Chain: A: PDB Molecule:coat protein;
PDBTitle: electron cryo-microscopy of filamentous flexible virus pepmv (pepino2 mosaic virus)
31d3c8ga1
not modelled 5.4 35
Fold:MtlR-like
Superfamily:MtlR-like
Family:MtlR-like

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