Phyre 2 Results for RVBD0341_(iniB)_409362

Email	mdejesus@rockefeller.edu
Description	RVBD0341_(iniB)_409362_410801
Date	Tue Jul 23 14:50:41 BST 2019
Unique Job ID	c4ce55132b7dbced
Sequence	MTSLIDYILS ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:36.029 Y:44.121 Z:1570.625

Model (left) based on template c1ygvA_

Top template information

PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Confidence and coverage

Confidence:

99.7%

Coverage:

97%

465 residues ( 97% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.

Warning: 72% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M T S L I D Y I L S L F R S E D A A R S F V A A P G R A M T S A G L I D I A P H Q I S S V A A N V V P G L N L G A G D P

Secondary structure

SS confidence

Disorder ? ? ?
?
? ?
?
?
? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence M S G L R Q A V A A R H G F A Q D V A N V G F A G D A G A G V A S V I T T D V G A G L A S G L G A G F L G Q G G L A L A

Secondary structure

SS confidence

Disorder ? ?
? ? ? ? ? ? ? ? ? ? ?
?
? ? ? ?
? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence A S S G G F G G Q V G L A A Q V G L G F T A V I E A E V G A Q V G A G L G I G T G L G A Q A G M G F G G G V G L G L G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ?
? ?
? ? ? ? ? ? ? ? ? ? ?
? ?
?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence Q A G G V I G G S A A G A I G A G V G G R L G G N G Q I G V A G Q G A V G A G V G A G V G G Q A G I A S Q I G V S A G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence G L G G V G N V S G L T G V S S N A V L A S N A S G Q A G L I A S E G A A L N G A A M P H L S G P L A G V G V G G Q A G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence A A G G A G L G F G A V G H P T P Q P A A L G A A G V V A K T E A A A G V V G G V G G A T A A G V G G A H G D I L G H E

Secondary structure

SS confidence

Disorder ? ? ? ? ?
? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ?
? ? ?
? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence G A A L G S V D T V N A G V T P V E H G L V L P S G P L I H G G T G G Y G G M N P P V T D A P A P Q V P A R A Q P M T T

Secondary structure

SS confidence

Disorder ? ? ? ? ?
?
?
? ? ?
?
?
? ? ?
?
? ? ? ?
?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . .

Sequence A A E H T P A V T Q P Q H T P V E P P V H D K P P S H S V F D V G H E P P V T H T P P A P I E L P S Y G L F G L P G F

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ?
? ?
? ? ?
?
?
? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 72%)

Alpha helix ( 6%)

Beta strand ( 10%)

Domain analysis [Show]

Rank Aligned region

PDB 1ygv chain A

3D model

Region: 13 - 478
Aligned: 465
Modelled: 466
Confidence: 99.7%
Identity: 18%
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Phyre2

PDB 3hqv chain B

3D model

Region: 12 - 476
Aligned: 457
Modelled: 465
Confidence: 99.3%
Identity: 17%
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement

Phyre2

PDB 1y0f chain B

3D model

Region: 12 - 479
Aligned: 465
Modelled: 467
Confidence: 98.9%
Identity: 15%
PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule

Phyre2

PDB 3bog chain A

3D model

Region: 399 - 477
Aligned: 78
Modelled: 79
Confidence: 94.4%
Identity: 5%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 3bog chain B

3D model

Region: 399 - 477
Aligned: 78
Modelled: 79
Confidence: 94.4%
Identity: 5%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 3boi chain A

3D model

Region: 396 - 477
Aligned: 80
Modelled: 82
Confidence: 92.6%
Identity: 8%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 2pne chain A

3D model

Region: 396 - 477
Aligned: 80
Modelled: 82
Confidence: 92.6%
Identity: 8%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein

Phyre2

PDB 3boi chain B

3D model

Region: 396 - 477
Aligned: 80
Modelled: 82
Confidence: 92.6%
Identity: 8%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 1nay chain C

3D model

Region: 445 - 479
Aligned: 35
Modelled: 35
Confidence: 74.8%
Identity: 14%
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: gpp-foldon:x-ray structure

Phyre2

PDB 5cti chain C

Region: 439 - 476
Aligned: 38
Modelled: 38
Confidence: 53.9%
Identity: 13%
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-3(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen (native form)

Phyre2

PDB 5ctd chain A

3D model

Region: 56 - 95
Aligned: 40
Modelled: 40
Confidence: 51.7%
Identity: 20%
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-1(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen

Phyre2

PDB 5ctd chain B

3D model

Region: 56 - 95
Aligned: 40
Modelled: 40
Confidence: 45.5%
Identity: 18%
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain,collagen alpha-2(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen

Phyre2

PDB 3ah9 chain A

3D model

Region: 384 - 407
Aligned: 24
Modelled: 24
Confidence: 10.3%
Identity: 33%
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution

Phyre2

PDB 1k6f chain D

3D model

Region: 407 - 435
Aligned: 29
Modelled: 29
Confidence: 9.3%
Identity: 17%
PDB header:structural protein
Chain: D: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

PDB 1k6f chain C

3D model

Region: 407 - 435
Aligned: 29
Modelled: 29
Confidence: 9.3%
Identity: 17%
PDB header:structural protein
Chain: C: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

PDB 1k6f chain A

3D model

Region: 407 - 435
Aligned: 29
Modelled: 29
Confidence: 9.3%
Identity: 17%
PDB header:structural protein
Chain: A: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

PDB 1k6f chain B

3D model

Region: 407 - 435
Aligned: 29
Modelled: 29
Confidence: 9.3%
Identity: 17%
PDB header:structural protein
Chain: B: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

PDB 1k6f chain E

3D model

Region: 407 - 435
Aligned: 29
Modelled: 29
Confidence: 9.3%
Identity: 17%
PDB header:structural protein
Chain: E: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

PDB 1k6f chain F

3D model

Region: 407 - 435
Aligned: 29
Modelled: 29
Confidence: 9.3%
Identity: 17%
PDB header:structural protein
Chain: F: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

PDB 3ah9 chain E

3D model

Region: 384 - 407
Aligned: 24
Modelled: 24
Confidence: 8.2%
Identity: 33%
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution

Phyre2

1
c1ygvA_

2
c3hqvB_

3
c1y0fB_

4
c3bogA_

5
c3bogB_

6
c3boiA_

7
c2pneA_

8
c3boiB_

9
c1nayC_

10
c5ctiC_

11
c5ctdA_

12
c5ctdB_

13
c3ah9A_

14
c1k6fD_

15
c1k6fC_

16
c1k6fA_

17
c1k6fB_

18
c1k6fE_

19
c1k6fF_

20
c3ah9E_

21

22

23

24

25

26

27

28

29

30