Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0344c_(lpqJ)_414381_414941
DateTue Jul 23 14:50:41 BST 2019
Unique Job IDc7cb479cdd590d99
SequenceVRLSLIARGM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:73.598 Y:35.797 Z:39.198
Model (left) based on template c1upsB_
Top template information
PDB header:glycosyl hydrolase
Chain: B: PDB Molecule:glcnac-alpha-1,4-gal-releasing endo-beta-galactosidase;
PDBTitle: glcnac[alpha]1-4gal releasing endo-[beta]-galactosidase from2 clostridium perfringens
Confidence and coverage
Confidence: 86.5% Coverage: 39%
73 residues ( 39% of your sequence) have been modelled with 86.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1upsB_
86.5 18
PDB header:glycosyl hydrolase
Chain: B: PDB Molecule:glcnac-alpha-1,4-gal-releasing endo-beta-galactosidase;
PDBTitle: glcnac[alpha]1-4gal releasing endo-[beta]-galactosidase from2 clostridium perfringens
2c3iynQ_
24.4 26
PDB header:virus
Chain: Q: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
3c2xfeA_
18.1 27
PDB header:sugar binding protein
Chain: A: PDB Molecule:carbohydrate binding module;
PDBTitle: vcbm60 in complex with galactobiose
4d1ylxa1
17.8 31
Fold:N domain of copper amine oxidase-like
Superfamily:GK1464-like
Family:GK1464-like
5d2okfa1
16.4 23
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:XisH-like
6d2inba1
16.2 23
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:XisH-like
7d2hqha1
12.3 31
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
8d1zvca1
12.2 17
Fold:AOC barrel-like
Superfamily:Allene oxide cyclase-like
Family:Allene oxide cyclase-like
9d2d81a1
12.1 33
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:PHB depolymerase-like
10d1xoda1
11.9 14
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
11c4k08A_
11.0 16
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis sensory transducer;
PDBTitle: periplasmic sensor domain of chemotaxis protein, adeh_3718
12c2mx4A_
10.8 36
PDB header:translation,protein binding
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4e-binding protein
PDBTitle: nmr structure of phosphorylated 4e-bp2
13d1ut1a_
10.1 26
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Dr-family adhesin
14d2brja1
9.9 17
Fold:AOC barrel-like
Superfamily:Allene oxide cyclase-like
Family:Allene oxide cyclase-like
15d2coya1
9.4 29
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
16c2lieA_
9.4 17
PDB header:sugar binding protein
Chain: A: PDB Molecule:ccl2 lectin;
PDBTitle: nmr structure of the lectin ccl2
17d1ixda_
9.1 24
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
18d1tdha3
9.0 19
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
19c5xtaC_
9.0 6
PDB header:oxidoreductase
Chain: C: PDB Molecule:virk protein;
PDBTitle: crystal structure of lpg1832, a virk family protein from legionella2 pneumophila
20c1ym0B_
8.5 47
PDB header:hydrolase
Chain: B: PDB Molecule:fibrinotic enzyme component b;
PDBTitle: crystal structure of earthworm fibrinolytic enzyme component b: a2 novel, glycosylated two-chained trypsin
21d1iwma_
not modelled 8.4 26
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:Outer membrane lipoprotein receptor LolB
22c3ixxE_
not modelled 7.6 30
PDB header:virus
Chain: E: PDB Molecule:peptide pr;
PDBTitle: the pseudo-atomic structure of west nile immature virus in complex2 with fab fragments of the anti-fusion loop antibody e53
23c2bcmB_
not modelled 7.3 29
PDB header:cell adhesion
Chain: B: PDB Molecule:f1845 fimbrial protein;
PDBTitle: daae adhesin
24d1whla_
not modelled 7.2 21
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
25c4akaA_
not modelled 7.1 45
PDB header:immune system
Chain: A: PDB Molecule:il-4-inducing protein;
PDBTitle: ipse alpha-1, an ige-binding crystallin
26c2k14A_
not modelled 6.5 32
PDB header:unknown function
Chain: A: PDB Molecule:yuaf protein;
PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis
27c1fwxB_
not modelled 6.3 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrous oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans
28c2k5rA_
not modelled 6.2 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein xf2673;
PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39
29c5g4yA_
not modelled 6.2 19
PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein;
PDBTitle: structural basis for carboxylic acid recognition by a cache2 chemosensory domain.
30c2krxA_
not modelled 6.2 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asl3597 protein;
PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.
31c4b2gB_
not modelled 6.0 15
PDB header:signaling protein
Chain: B: PDB Molecule:gh3-1 auxin conjugating enzyme;
PDBTitle: crystal structure of an indole-3-acetic acid amido synthase from vitis2 vinifera involved in auxin homeostasis
32c2g8gA_
not modelled 5.8 16
PDB header:virus
Chain: A: PDB Molecule:capsid;
PDBTitle: structurally mapping the diverse phenotype of adeno-2 associated virus serotype 4
33c3iynR_
not modelled 5.8 41
PDB header:virus
Chain: R: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
34d1qnia2
not modelled 5.7 18
Fold:7-bladed beta-propeller
Superfamily:Nitrous oxide reductase, N-terminal domain
Family:Nitrous oxide reductase, N-terminal domain
35d1vdra_
not modelled 5.7 23
Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
36d1x9la_
not modelled 5.4 20
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:DR1885-like metal-binding protein
Family:DR1885-like metal-binding protein
37c2kkyA_
not modelled 5.3 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ecs2156;
PDBTitle: solution structure of c-terminal domain of oxidized nleg2-3 (residue2 90-191) from pathogenic e. coli o157:h7. northeast structural3 genomics consortium and midwest center for structural genomics target4 et109a
38c2waqG_
not modelled 5.2 29
PDB header:transcription
Chain: G: PDB Molecule:dna-directed rna polymerase rpo8 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-directed rna2 polymerase
39d2cowa1
not modelled 5.2 19
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
40c5kodA_
not modelled 5.0 19
PDB header:ligase
Chain: A: PDB Molecule:indole-3-acetic acid-amido synthetase gh3.5;
PDBTitle: crystal structure of gh3.5 acyl acid amido synthetase from arabidopsis2 thaliana

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