Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0346c_(ansP2)_415502_416965
DateTue Jul 23 14:50:41 BST 2019
Unique Job IDc2174d0ca2e96734
SequenceMPPLDITDER ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.182 Y:58.559 Z:59.459
Model (left) based on template c4djiA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
Confidence and coverage
Confidence:100.0% Coverage: 93%
455 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4djiA_
100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
2c5oqtA_
100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
3c6f2wA_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
4c3giaA_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
5c6irtB_
100.0 16
PDB header:membrane protein
Chain: B: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: human lat1-4f2hc complex bound with bch
6c3lrcC_
100.0 18
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
7c6jmqA_
100.0 19
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: lat1-cd98hc complex bound to mem-108 fab
8c6csfC_
100.0 11
PDB header:membrane protein
Chain: C: PDB Molecule:sodium/alanine symporter agcs;
PDBTitle: crystal structure of sodium/alanine symporter agcs with d-alanine2 bound
9c2jlnA_
100.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
10c6c08F_
99.6 8
PDB header:membrane protein
Chain: F: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
11c5nvaA_
99.5 10
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
12c2xq2A_
99.3 9
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
13c3dh4A_
99.2 8
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
14c6c08C_
98.9 9
PDB header:membrane protein
Chain: C: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
15c5m87A_
98.6 11
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
16c4wgwA_
98.6 15
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
17c4wgvC_
98.6 15
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
18c4m48A_
98.2 14
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
19c5i6xA_
98.2 10
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
20d2a65a1
98.0 10
Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
21c2w8aC_
not modelled 97.5 11
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
22c4us3A_
not modelled 97.5 12
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: crystal structure of the bacterial nss member mhst in an2 occluded inward-facing state
23c4ainB_
not modelled 97.4 12
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
24c3hfxA_
not modelled 94.4 11
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
25c5kteA_
not modelled 76.5 16
PDB header:transport protein/immune system
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of deinococcus radiodurans mnth, an nramp-family2 transition metal transporter
26c6nbxG_
not modelled 54.6 12
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
27c4k1cB_
not modelled 51.8 11
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
28c5xpdA_
not modelled 25.0 10
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
29c5sv0C_
not modelled 22.7 9
PDB header:transport protein
Chain: C: PDB Molecule:biopolymer transport protein exbb;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 7.0
30c3ixzA_
not modelled 21.4 8
PDB header:hydrolase
Chain: A: PDB Molecule:potassium-transporting atpase alpha;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
31c4x5mB_
not modelled 18.1 9
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of semisweet in the inward-open conformation
32c4px7A_
not modelled 17.4 9
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatidylglycerophosphatase;
PDBTitle: crystal structure of lipid phosphatase e. coli pgpb
33c5ny0A_
not modelled 17.1 21
PDB header:cell adhesion
Chain: A: PDB Molecule:l. reuteris srrp binding region;
PDBTitle: l. reuters 100-23 srrp
34c3qnqD_
not modelled 16.6 4
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
35c2bbjB_
not modelled 16.5 6
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
36c5v2sA_
not modelled 16.1 13
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
37c5i6cB_
not modelled 15.2 13
PDB header:transport protein
Chain: B: PDB Molecule:uric acid-xanthine permease;
PDBTitle: the structure of the eukaryotic purine/h+ symporter, uapa, in complex2 with xanthine
38c2momC_
not modelled 15.2 19
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
39d1fftb2
not modelled 14.5 7
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
40c3j1zP_
not modelled 14.0 10
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
41d1pw4a_
not modelled 13.9 7
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
42d1j6ra_
not modelled 13.3 22
Fold:Methionine synthase activation domain-like
Superfamily:Methionine synthase activation domain-like
Family:Hypothetical protein TM0269
43c2momB_
not modelled 13.0 17
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
44c6hwhX_
not modelled 12.8 10
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
45c5cthB_
not modelled 12.8 9
PDB header:transport protein
Chain: B: PDB Molecule:bidirectional sugar transporter sweet2b;
PDBTitle: the 3.7 a resolution structure of a eukaryotic sweet transporter
46c4k1cA_
not modelled 12.8 10
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
47c2m67A_
not modelled 12.4 16
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
48c3mkuA_
not modelled 12.1 9
PDB header:transport protein
Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
49c5xyiP_
not modelled 11.6 13
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein s19, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
50c2lowA_
not modelled 10.9 13
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
51c4o9tH_
not modelled 10.8 12
PDB header:membrane protein
Chain: H: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
52c5oonA_
not modelled 10.7 12
PDB header:membrane protein
Chain: A: PDB Molecule:undecaprenyl-diphosphatase;
PDBTitle: structure of undecaprenyl-pyrophosphate phosphatase, baca
53c3jcuS_
not modelled 9.9 15
PDB header:membrane protein
Chain: S: PDB Molecule:chlorophyll a-b binding protein 26 kd (cp26);
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
54c4o9uB_
not modelled 9.5 12
PDB header:membrane protein
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
55c5vkvA_
not modelled 9.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccda;
PDBTitle: solution nmr structure of the membrane electron transporter ccda
56c5ep6C_
not modelled 9.3 5
PDB header:protein binding/transferase
Chain: C: PDB Molecule:5-azacytidine-induced protein 2;
PDBTitle: the crystal structure of nap1 in complex with tbk1
57d3dhwa1
not modelled 9.3 11
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
58c6igz3_
not modelled 9.0 12
PDB header:plant protein
Chain: 3: PDB Molecule:lhca-d;
PDBTitle: structure of psi-lhci
59c2ke4A_
not modelled 8.7 13
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
60c5ep6A_
not modelled 8.6 5
PDB header:protein binding/transferase
Chain: A: PDB Molecule:5-azacytidine-induced protein 2;
PDBTitle: the crystal structure of nap1 in complex with tbk1
61c2l8sA_
not modelled 8.5 8
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
62c6i1rA_
not modelled 8.5 7
PDB header:membrane protein
Chain: A: PDB Molecule:cmp-sialic acid transporter 1;
PDBTitle: crystal structure of cmp bound cst in an outward facing conformation
63c4v1am_
not modelled 8.3 43
PDB header:ribosome
Chain: M: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
64c2m7eA_
not modelled 8.2 18
PDB header:calmodulin-binding protein
Chain: A: PDB Molecule:calcium-transporting atpase 2, plasma membrane-type;
PDBTitle: solution structure of the calmodulin-binding domain of plant calcium-2 atpase aca2
65c6c6lO_
not modelled 8.2 20
PDB header:membrane protein
Chain: O: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
66d1rwta_
not modelled 8.1 21
Fold:Chlorophyll a-b binding protein
Superfamily:Chlorophyll a-b binding protein
Family:Chlorophyll a-b binding protein
67c6bk5A_
not modelled 8.0 29
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin ligase cbl;
PDBTitle: inactive choanoflagellate e3 ubiquitin ligase cbl tkb
68c6fosK_
not modelled 8.0 23
PDB header:photosynthesis
Chain: K: PDB Molecule:photosystem i reaction center subunit x;
PDBTitle: cyanidioschyzon merolae photosystem i
69d2a90a1
not modelled 8.0 6
Fold:WWE domain
Superfamily:WWE domain
Family:WWE domain
70c2zxeA_
not modelled 7.7 10
PDB header:hydrolase/transport protein
Chain: A: PDB Molecule:na, k-atpase alpha subunit;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
71c2kncA_
not modelled 7.6 7
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
72c2na6A_
not modelled 7.6 4
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
73c2na6C_
not modelled 7.6 4
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
74c2na6B_
not modelled 7.6 4
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
75d3buxb2
not modelled 7.5 23
Fold:N-cbl like
Superfamily:N-terminal domain of cbl (N-cbl)
Family:N-terminal domain of cbl (N-cbl)
76c2mkvA_
not modelled 7.5 16
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
77c2lonA_
not modelled 7.4 13
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
78d2yvxa3
not modelled 7.4 19
Fold:MgtE membrane domain-like
Superfamily:MgtE membrane domain-like
Family:MgtE membrane domain-like
79c6f0kF_
not modelled 7.4 7
PDB header:membrane protein
Chain: F: PDB Molecule:actf;
PDBTitle: alternative complex iii
80c5xxuP_
not modelled 7.4 13
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein us19;
PDBTitle: small subunit of toxoplasma gondii ribosome
81c6c6lN_
not modelled 7.3 17
PDB header:membrane protein
Chain: N: PDB Molecule:v0 assembly protein 1;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
82c6b2zS_
not modelled 7.3 6
PDB header:membrane protein
Chain: S: PDB Molecule:atp synthase subunit j, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
83c6b2zi_
not modelled 7.3 6
PDB header:membrane protein
Chain: I: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
84c5n9jF_
not modelled 7.3 10
PDB header:transcription
Chain: F: PDB Molecule:mediator complex subunit 9;
PDBTitle: core mediator of transcriptional regulation
85c6gcs3_
not modelled 7.2 10
PDB header:oxidoreductase
Chain: 3: PDB Molecule:nd3 subunit (nu3m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
86c2w2eA_
not modelled 7.2 12
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin pip2-7 7;
PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin, aqy1, in a2 closed conformation at ph 3.5
87c2yevB_
not modelled 7.1 7
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
88c2kluA_
not modelled 7.1 14
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
89c2m20B_
not modelled 7.0 12
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
90c4r0cB_
not modelled 7.0 9
PDB header:membrane protein
Chain: B: PDB Molecule:abgt putative transporter family;
PDBTitle: crystal structure of the alcanivorax borkumensis ydah transporter2 reveals an unusual topology
91c2yadA_
not modelled 7.0 25
PDB header:surfactant protein
Chain: A: PDB Molecule:surfactant protein c brichos domain;
PDBTitle: brichos domain of surfactant protein c precursor protein
92c4xk88_
not modelled 7.0 21
PDB header:photosynthesis
Chain: 8: PDB Molecule:chlorophyll a-b binding protein 3, chloroplastic;
PDB Fragment:unp residues 2-81; PDBTitle: crystal structure of plant photosystem i-lhci super-complex at 2.82 angstrom resolution
93c4n7wA_
not modelled 6.9 11
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
94c3j20T_
not modelled 6.9 17
PDB header:ribosome
Chain: T: PDB Molecule:30s ribosomal protein s19p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
95c2rddB_
not modelled 6.9 7
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
96c2wsc1_
not modelled 6.9 21
PDB header:photosynthesis
Chain: 1: PDB Molecule:at3g54890;
PDBTitle: improved model of plant photosystem i
97c6igz7_
not modelled 6.9 25
PDB header:plant protein
Chain: 7: PDB Molecule:lhca-h;
PDBTitle: structure of psi-lhci
98c5zghK_
not modelled 6.9 21
PDB header:photosynthesis
Chain: K: PDB Molecule:psak;
PDBTitle: cryo-em structure of the red algal psi-lhcr
99d2otaa1
not modelled 6.8 26
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below