Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0351_(grpE)_421709_422416
DateTue Jul 23 14:50:42 BST 2019
Unique Job ID248642459379d170
SequenceVTDGNQKPDG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.619 Y:105.865 Z:52.688
Model (left) based on template c1dkgB_
Top template information
PDB header:complex (hsp24/hsp70)
Chain: B: PDB Molecule:nucleotide exchange factor grpe;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
Confidence and coverage
Confidence:100.0% Coverage: 63%
147 residues ( 63% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1dkgB_
100.0 22
PDB header:complex (hsp24/hsp70)
Chain: B: PDB Molecule:nucleotide exchange factor grpe;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
2c4aniA_
100.0 35
PDB header:chaperone
Chain: A: PDB Molecule:protein grpe;
PDBTitle: structural basis for the intermolecular communication between2 dnak and grpe in the dnak chaperone system from3 geobacillus kaustophilus hta426
3c3a6mB_
100.0 30
PDB header:chaperone
Chain: B: PDB Molecule:protein grpe;
PDBTitle: crystal structure of grpe from thermus thermophilus hb8
4d1dkga1
99.8 21
Fold:Head domain of nucleotide exchange factor GrpE
Superfamily:Head domain of nucleotide exchange factor GrpE
Family:Head domain of nucleotide exchange factor GrpE
5c5dolB_
87.0 16
PDB header:replication
Chain: B: PDB Molecule:initiation-control protein yaba;
PDBTitle: crystal structure of yaba amino-terminal domain from bacillus subtilis
6c3mkxC_
71.0 19
PDB header:antiviral protein
Chain: C: PDB Molecule:bone marrow stromal antigen 2;
PDBTitle: crystal structure of bst2/tetherin
7c3swfA_
70.3 12
PDB header:transport protein
Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1;
PDBTitle: cnga1 621-690 containing clz domain
8c2yy0D_
67.6 5
PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
9c5mg8B_
67.3 11
PDB header:recombination
Chain: B: PDB Molecule:structural maintenance of chromosomes protein 6;
PDBTitle: crystal structure of the s.pombe smc5/6 hinge domain
10c1m7lA_
53.3 34
PDB header:sugar binding protein
Chain: A: PDB Molecule:pulmonary surfactant-associated protein d;
PDBTitle: solution structure of the coiled-coil trimerization domain2 from lung surfactant protein d
11c3swyB_
52.5 10
PDB header:transport protein
Chain: B: PDB Molecule:cyclic nucleotide-gated cation channel alpha-3;
PDBTitle: cnga3 626-672 containing clz domain
12c3m9bK_
49.0 15
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
13c2x7aB_
46.9 19
PDB header:immune system
Chain: B: PDB Molecule:bone marrow stromal antigen 2;
PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain
14c5fv8B_
44.6 9
PDB header:structural protein
Chain: B: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
15c5fv8A_
44.1 9
PDB header:structural protein
Chain: A: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
16c1gk6B_
32.1 9
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine zipper (z2b)
17c4y66D_
30.6 15
PDB header:cell cycle
Chain: D: PDB Molecule:putative tbpip family protein;
PDBTitle: crystal structure of giardia lamblia hop2-mnd1 complex
18c4jzlA_
29.2 20
PDB header:apoptosis, transport protein
Chain: A: PDB Molecule:b-cell receptor-associated protein 31;
PDBTitle: crystal structure of bap31 vded at alkaline ph
19c5j10A_
29.2 21
PDB header:de novo protein
Chain: A: PDB Molecule:peptide design 2l4hc2_24;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
20c4w7yB_
28.8 14
PDB header:transport protein
Chain: B: PDB Molecule:b-cell receptor-associated protein 29;
PDBTitle: dimeric bap29 vded with disulfide bonds in crystal contacts
21c1u2mC_
not modelled 24.5 11
PDB header:chaperone
Chain: C: PDB Molecule:histone-like protein hlp-1;
PDBTitle: crystal structure of skp
22c4kqtA_
not modelled 24.1 17
PDB header:chaperone
Chain: A: PDB Molecule:putative outer membrane chaperone (omph-like);
PDBTitle: crystal structure of a putative outer membrane chaperone (omph-like)2 (cc_1914) from caulobacter crescentus cb15 at 2.83 a resolution (psi3 community target, shapiro)
23c3j0xI_
not modelled 23.1 16
PDB header:ribosome
Chain: I: PDB Molecule:30s ribosomal protein s6;
PDBTitle: structural characterization of mrna-trna translocation intermediates2 (30s ribosome of class 4b of the six classes)
24c2xv5A_
not modelled 21.3 18
PDB header:structural protein
Chain: A: PDB Molecule:lamin-a/c;
PDBTitle: human lamin a coil 2b fragment
25c3k8zD_
not modelled 20.5 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase;
PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis
26c5vgzC_
not modelled 19.4 13
PDB header:hydrolase
Chain: C: PDB Molecule:26s proteasome regulatory subunit 8;
PDBTitle: conformational landscape of the p28-bound human proteasome regulatory2 particle
27c4wvmA_
not modelled 18.3 9
PDB header:toxin
Chain: A: PDB Molecule:stonustoxin subunit alpha;
PDBTitle: stonustoxin structure
28d1ep5a_
not modelled 17.9 23
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
29c1kxfA_
not modelled 17.7 15
PDB header:viral protein
Chain: A: PDB Molecule:sindbis virus capsid protein;
PDBTitle: sindbis virus capsid, (wild-type) residues 1-264, tetragonal crystal2 form (form ii)
30d1wyka_
not modelled 17.1 15
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
31c4qdyA_
not modelled 16.6 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of a ybbr-like protein (sp_1560) from streptococcus2 pneumoniae tigr4 at 2.74 a resolution
32c2kxyA_
not modelled 16.3 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of sur18c from streptococcus thermophilus.2 northeast structural genomics consortium target sur18c
33c3ni0A_
not modelled 16.3 15
PDB header:immune system
Chain: A: PDB Molecule:bone marrow stromal antigen 2;
PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain
34c2gl2B_
not modelled 15.8 4
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
35d2qeec1
not modelled 14.8 14
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Uronate isomerase-like
36c3nmdA_
not modelled 14.7 21
PDB header:transferase
Chain: A: PDB Molecule:cgmp dependent protein kinase;
PDBTitle: crystal structure of the leucine zipper domain of cgmp dependent2 protein kinase i beta
37d1wi8a_
not modelled 14.6 16
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
38d1vcpa_
not modelled 14.6 33
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
39d1ttea1
not modelled 14.3 28
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
40d1j2za_
not modelled 14.0 11
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:UDP N-acetylglucosamine acyltransferase
41c5yzlA_
not modelled 13.7 40
PDB header:chaperone
Chain: A: PDB Molecule:protein archease;
PDBTitle: crystal structure of human archease d178a
42d1k4ta1
not modelled 13.5 14
Fold:Long alpha-hairpin
Superfamily:Eukaryotic DNA topoisomerase I, dispensable insert domain
Family:Eukaryotic DNA topoisomerase I, dispensable insert domain
43c5fiyE_
not modelled 13.3 18
PDB header:apoptosis
Chain: E: PDB Molecule:prkc apoptosis wt1 regulator protein;
PDBTitle: crystal structure of coiled coil domain of pawr
44d2cpia1
not modelled 13.2 8
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
45c6cfzG_
not modelled 12.5 18
PDB header:nuclear protein
Chain: G: PDB Molecule:hsk3;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
46c1dipA_
not modelled 12.5 7
PDB header:acetylation
Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive
PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures
47d2d6fa1
not modelled 12.5 13
Fold:Sm-like fold
Superfamily:GatD N-terminal domain-like
Family:GatD N-terminal domain-like
48c2marA_
not modelled 12.4 16
PDB header:unknown function
Chain: A: PDB Molecule:sxp/ral-2 family protein;
PDBTitle: solution structure of ani s 5 anisakis simplex allergen
49c4fzsB_
not modelled 12.3 12
PDB header:protein transport
Chain: B: PDB Molecule:sorting nexin-1;
PDBTitle: structure of human snx1 bar domain
50c3zfjA_
not modelled 12.2 17
PDB header:zinc-binding protein
Chain: A: PDB Molecule:pneumococcal histidine triad protein d;
PDBTitle: n-terminal domain of pneumococcal phtd protein with bound2 zn(ii)
51d2choa1
not modelled 12.2 10
Fold:Hyaluronidase domain-like
Superfamily:Hyaluronidase post-catalytic domain-like
Family:Hyaluronidase post-catalytic domain-like
52d1rk8a_
not modelled 11.2 8
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
53c6mx7C_
not modelled 11.1 23
PDB header:virus
Chain: C: PDB Molecule:capsid;
PDBTitle: cryoem structure of chimeric eastern equine encephalitis virus:2 genome-binding capsid n-terminal domain
54c2oszA_
not modelled 10.9 12
PDB header:structural protein
Chain: A: PDB Molecule:nucleoporin p58/p45;
PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding
55c4n2pC_
not modelled 10.8 50
PDB header:chaperone
Chain: C: PDB Molecule:protein archease;
PDBTitle: structure of archease from pyrococcus horikoshii
56c5w3dB_
not modelled 10.8 8
PDB header:motor protein
Chain: B: PDB Molecule:protein claret segregational;
PDBTitle: the structure of kinesin-14 wild-type ncd-adp dimer
57c3kltB_
not modelled 10.4 7
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of a vimentin fragment
58c5szwA_
not modelled 10.2 14
PDB header:rna binding protein
Chain: A: PDB Molecule:elav-like protein 1;
PDBTitle: nmr solution structure of the rrm1 domain of the post-transcriptional2 regulator hur
59c4uqtA_
not modelled 10.2 12
PDB header:translation
Chain: A: PDB Molecule:u2 snrnp component ist3;
PDBTitle: rrm-peptide structure in res complex
60c2wt7B_
not modelled 10.1 11
PDB header:transcription
Chain: B: PDB Molecule:transcription factor mafb;
PDBTitle: crystal structure of the bzip heterodimeric complex mafb:cfos bound to2 dna
61c3ssuB_
not modelled 10.1 22
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment
62c3cvfA_
not modelled 10.0 16
PDB header:signaling protein
Chain: A: PDB Molecule:homer protein homolog 3;
PDBTitle: crystal structure of the carboxy terminus of homer3
63c6h7wO_
not modelled 9.9 8
PDB header:protein transport
Chain: O: PDB Molecule:putative vacuolar protein sorting-associated protein;
PDBTitle: model of retromer-vps5 complex assembled on membrane.
64c5vgzF_
not modelled 9.8 7
PDB header:hydrolase
Chain: F: PDB Molecule:26s proteasome regulatory subunit 6a;
PDBTitle: conformational landscape of the p28-bound human proteasome regulatory2 particle
65c3nwiC_
not modelled 9.6 15
PDB header:transport protein
Chain: C: PDB Molecule:zinc transport protein zntb;
PDBTitle: the soluble domain structure of the zntb zn2+ efflux system
66c2x6rA_
not modelled 9.6 8
PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose
67c2yewG_
not modelled 9.5 33
PDB header:virus
Chain: G: PDB Molecule:capsid protein;
PDBTitle: modeling barmah forest virus structural proteins
68d1huwa_
not modelled 9.5 15
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Long-chain cytokines
69c4tq1B_
not modelled 9.5 17
PDB header:protein binding
Chain: B: PDB Molecule:tectonin beta-propeller repeat-containing protein 1;
PDBTitle: crystal structure of human atg5-tecair
70c3ipkA_
not modelled 9.4 8
PDB header:cell adhesion
Chain: A: PDB Molecule:agi/ii;
PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans
71d2cbia1
not modelled 9.3 10
Fold:Hyaluronidase domain-like
Superfamily:Hyaluronidase post-catalytic domain-like
Family:Hyaluronidase post-catalytic domain-like
72c6dt0D_
not modelled 9.3 4
PDB header:transport protein
Chain: D: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of a mitochondrial calcium uniporter
73d1fxla1
not modelled 9.2 8
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
74d1gc5a_
not modelled 8.6 19
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:ADP-specific Phosphofructokinase/Glucokinase
75c2cbjA_
not modelled 8.5 11
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase;
PDBTitle: structure of the clostridium perfringens nagj family 84 glycoside2 hydrolase, a homologue of human o-glcnacase in complex with pugnac
76d1hcia1
not modelled 8.5 14
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
77d1weya_
not modelled 8.4 7
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
78d1ykhb1
not modelled 8.3 8
Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
79d1rsoa_
not modelled 8.1 19
Fold:L27 domain
Superfamily:L27 domain
Family:L27 domain
80c4lpqA_
not modelled 8.1 30
PDB header:transferase
Chain: A: PDB Molecule:erfk/ybis/ycfs/ynhg family protein;
PDBTitle: crystal structure of the l,d-transpeptidase (residues 123-326) from2 xylanimonas cellulosilytica dsm 15894
81c3ghgK_
not modelled 8.1 9
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
82c1x8yA_
not modelled 8.0 19
PDB header:structural protein
Chain: A: PDB Molecule:lamin a/c;
PDBTitle: human lamin coil 2b
83d2j01s1
not modelled 8.0 30
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
84c5mmjv_
not modelled 8.0 10
PDB header:ribosome
Chain: V: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
85c2xmpB_
not modelled 7.9 8
PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp
86c6o7xa_
not modelled 7.7 9
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
87c4gc5A_
not modelled 7.7 19
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase 1, mitochondrial;
PDBTitle: crystal structure of murine tfb1m
88c6ejiA_
not modelled 7.6 15
PDB header:transferase
Chain: A: PDB Molecule:wlac protein;
PDBTitle: structure of a glycosyltransferase
89c2choA_
not modelled 7.6 8
PDB header:hydrolase
Chain: A: PDB Molecule:glucosaminidase;
PDBTitle: bacteroides thetaiotaomicron hexosaminidase with o-2 glcnacase activity
90d2pq6a1
not modelled 7.6 22
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
91d2vy4a1
not modelled 7.6 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:CHHC finger
92c6h9mA_
not modelled 7.6 8
PDB header:membrane protein
Chain: A: PDB Molecule:coiled-coil domain-containing protein 90b, mitochondrial,
PDBTitle: coiled-coil domain-containing protein 90b residues 43-125 from homo2 sapiens fused to a gcn4 adaptor
93c3nmdB_
not modelled 7.5 19
PDB header:transferase
Chain: B: PDB Molecule:cgmp dependent protein kinase;
PDBTitle: crystal structure of the leucine zipper domain of cgmp dependent2 protein kinase i beta
94c5jvpC_
not modelled 7.5 7
PDB header:motor protein
Chain: C: PDB Molecule:chimera protein of centromere-associated protein e and
PDBTitle: the neck-linker and alpha 7 helix of homo sapiens cenp-e
95d1gpia_
not modelled 7.4 14
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Glycosyl hydrolase family 7 catalytic core
96c2gejA_
not modelled 7.3 15
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
97c3pltB_
not modelled 7.3 11
PDB header:structural protein
Chain: B: PDB Molecule:sphingolipid long chain base-responsive protein lsp1;
PDBTitle: crystal structure of lsp1 from saccharomyces cerevisiae
98c1qoyA_
not modelled 7.3 11
PDB header:toxin
Chain: A: PDB Molecule:hemolysin e;
PDBTitle: e.coli hemolysin e (hlye, clya, shea)
99c6dnfA_
not modelled 7.3 8
PDB header:membrane protein
Chain: A: PDB Molecule:mitochondrial calcium uniporter mcu;
PDBTitle: cryo-em structure of the mitochondrial calcium uniporter mcu from the2 fungus cyphellophora europaea

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