Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0357c_(purA)_435472_436770
DateTue Jul 23 14:50:42 BST 2019
Unique Job ID9b951a72fe81a2a2
SequenceMPAIVLIGAQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.819 Y:60.613 Z:65.151
Model (left) based on template d1qf5a_
Top template information
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
Confidence and coverage
Confidence:100.0% Coverage: 99%
427 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1qf5a_



100.0 51
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
2d1dj3a_



100.0 46
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
3d1dj2a_



100.0 44
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
4d1iwea_



100.0 44
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
5c1iweB_



100.0 44
PDB header:ligase
Chain: B: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: imp complex of the recombinant mouse-muscle adenylosuccinate2 synthetase
6d1p9ba_



100.0 41
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
7c4m0gB_



100.0 49
PDB header:ligase
Chain: B: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: the crystal structure of an adenylosuccinate synthetase from bacillus2 anthracis str. ames ancestor.
8c5i34B_



100.0 43
PDB header:ligase
Chain: B: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: adenylosuccinate synthetase from cryptococcus neoformans complexed2 with gdp and imp
9c3ue9A_



100.0 46
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase (ampsase) (pura) from2 burkholderia thailandensis
10c3r7tA_



100.0 45
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase from campylobacter2 jejuni
11c6bs7A_



100.0 46
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase from legionella2 pneumophila philadelphia 1
12c2d7uA_



100.0 43
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of hypothetical adenylosuccinate synthetase, ph04382 from pyrococcus horikoshii ot3
13c6fm0A_



100.0 27
PDB header:biosynthetic protein
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: deoxyguanylosuccinate synthase (dgss) and atp structure at 1.72 angstrom resolution
14d1a0ia1



89.4 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
15c3knuD_



68.1 17
PDB header:transferase
Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum
16d1p9pa_



59.1 21
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
17d1uala_



55.8 22
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
18c1zgxA_



51.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:guanyl-specific ribonuclease sa;
PDBTitle: crystal structure of ribonuclease mutant
19d1qwda_



48.1 19
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
20d2f09a1



45.5 16
Fold:Streptavidin-like
Superfamily:YdhA-like
Family:YdhA-like
21c3b9qA_



not modelled 44.6 32
PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
22c5wyrA_



not modelled 44.1 23
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure and catalytic mechanism of the essential m1g37 trna2 methyltransferase trmd from pseudomonas aeruginosa
23c4lfmA_



not modelled 42.2 12
PDB header:isomerase
Chain: A: PDB Molecule:galactose-6-phosphate isomerase subunit a;
PDBTitle: crystal structure of d-galactose-6-phosphate isomerase in complex with2 d-psicose
24c5knnG_



not modelled 41.8 20
PDB header:ligase
Chain: G: PDB Molecule:alanine--trna ligase, cytoplasmic;
PDBTitle: evolutionary gain of alanine mischarging to non-cognate trnas with a2 g4:u69 base pair
25c4txwA_



not modelled 41.2 31
PDB header:carbohydrate-binding module
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: crystal structure of cbm32-4 from the clostridium perfringens nagh
26c3ky7A_



not modelled 38.8 19
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252
27c5l3sF_



not modelled 38.0 27
PDB header:protein transport
Chain: F: PDB Molecule:signal recognition particle receptor ftsy;
PDBTitle: structure of the gtpase heterodimer of crenarchaeal srp54 and ftsy
28c1zu4A_



not modelled 37.3 28
PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
29c2qy9A_



not modelled 36.7 27
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
30c3dmdA_



not modelled 36.1 25
PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
31c1oy5B_



not modelled 35.8 16
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus
32d1oy5a_



not modelled 35.8 16
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
33c2og2A_



not modelled 35.0 32
PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
34c4ak9A_



not modelled 35.0 27
PDB header:protein transport
Chain: A: PDB Molecule:cpftsy;
PDBTitle: structure of chloroplast ftsy from physcomitrella patens
35d1j8yf2



not modelled 34.2 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
36c2xf4A_



not modelled 32.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase;
PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl
37c3iefA_



not modelled 32.2 22
PDB header:transferase, rna binding protein
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna guanine-n1-methyltransferase from bartonella2 henselae using mpcs.
38c2q9cA_



not modelled 31.7 29
PDB header:signaling protein
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of ftsy:gmppnp with mgcl complex
39c1j8yF_



not modelled 31.5 16
PDB header:signaling protein
Chain: F: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant
40c3opyE_



not modelled 31.0 15
PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
41c5mu4A_



not modelled 30.3 14
PDB header:viral protein
Chain: A: PDB Molecule:tail tubular protein a;
PDBTitle: tail tubular protein a of klebsiella pneumoniae bacteriophage kp32
42c1vmaA_



not modelled 29.9 32
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
43c2yhsA_



not modelled 29.5 28
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
44d2jfga1



not modelled 28.7 19
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
45c6cy1B_



not modelled 27.5 26
PDB header:signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor ftsy;
PDBTitle: crystal structure of signal recognition particle receptor ftsy from2 elizabethkingia anophelis
46c3f6zB_



not modelled 27.1 17
PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of pseudomonas aeruginosa mlic in complex2 with hen egg white lysozyme
47c2cnwF_



not modelled 26.4 30
PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
48c5l3rC_



not modelled 25.8 35
PDB header:protein transport
Chain: C: PDB Molecule:signal recognition particle 54 kda protein, chloroplastic;
PDBTitle: structure of the gtpase heterodimer of chloroplast srp54 and ftsy from2 arabidopsis thaliana
49d1lt7a_



not modelled 25.8 32
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
50d1iwpg_



not modelled 25.4 16
Fold:Open three-helical up-and-down bundle
Superfamily:Diol dehydratase, gamma subunit
Family:Diol dehydratase, gamma subunit
51c2qioA_



not modelled 25.4 8
PDB header:unknown function
Chain: A: PDB Molecule:enoyl-(acyl-carrier-protein) reductase;
PDBTitle: x-ray structure of enoyl-acyl carrier protein reductase from bacillus2 anthracis with triclosan
52d1oboa_



not modelled 25.2 24
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
53c4zjuA_



not modelled 25.1 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadh];
PDBTitle: structure of a nadh-dependent enoyl-acp reductase from acinetobacter2 baumannii in complex with nad
54c3jugA_



not modelled 24.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5
55c1uc5M_



not modelled 24.6 19
PDB header:lyase
Chain: M: PDB Molecule:diol dehydrase gamma subunit;
PDBTitle: structure of diol dehydratase complexed with (r)-1,2-2 propanediol
56d1eexg_



not modelled 24.6 19
Fold:Open three-helical up-and-down bundle
Superfamily:Diol dehydratase, gamma subunit
Family:Diol dehydratase, gamma subunit
57c3ktsA_



not modelled 23.6 17
PDB header:transcriptional regulator
Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein;
PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365
58c4adxI_



not modelled 22.9 25
PDB header:ribosome
Chain: I: PDB Molecule:aif6;
PDBTitle: the cryo-em structure of the archaeal 50s ribosomal subunit in complex2 with initiation factor 6
59d1qyia_



not modelled 22.7 24
Fold:HAD-like
Superfamily:HAD-like
Family:Hypothetical protein MW1667 (SA1546)
60c3j4bB_



not modelled 22.6 22
PDB header:viral protein
Chain: B: PDB Molecule:tail tubular protein a;
PDBTitle: structure of t7 gatekeeper protein (gp11)
61c4dsdA_



not modelled 22.2 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of a putative periplasmic protein (bacova_05534)2 from bacteroides ovatus atcc 8483 at 1.75 a resolution
62c4em8A_



not modelled 21.7 20
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase b;
PDBTitle: the structure of ribose 5-phosphate isomerase b from anaplasma2 phagocytophilum
63d1jsca3



not modelled 20.9 14
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
64c2px0D_



not modelled 20.8 22
PDB header:biosynthetic protein
Chain: D: PDB Molecule:flagellar biosynthesis protein flhf;
PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
65d1g7oa1



not modelled 19.9 14
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
66d1lnia_



not modelled 19.2 30
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Bacterial ribonucleases
67d1k1ga_



not modelled 19.1 21
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
68c1uz4A_



not modelled 19.1 30
PDB header:hydrolase
Chain: A: PDB Molecule:man5a;
PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis
69d1uuqa_



not modelled 19.1 30
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
70c2z2vA_



not modelled 18.9 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1688;
PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii
71c4l6tA_



not modelled 18.7 35
PDB header:hydrolase
Chain: A: PDB Molecule:ecxa;
PDBTitle: gm1 bound form of the ecx ab5 holotoxin
72d1q44a_



not modelled 18.0 8
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:PAPS sulfotransferase
73c1yfsB_



not modelled 17.9 15
PDB header:ligase
Chain: B: PDB Molecule:alanyl-trna synthetase;
PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine
74c3quvB_



not modelled 17.6 15
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus
75d1cora_



not modelled 17.1 14
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
76c4h3zA_



not modelled 16.8 23
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a symmetric dimer of a trna (guanine-(n(1)-)-2 methyltransferase from burkholderia phymatum bound to s-adenosyl3 homocystein in both half-sites
77d1fuea_



not modelled 16.7 23
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
78c3kpgA_



not modelled 16.4 42
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfide-quinone reductase, putative;
PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone
79c5mekA_



not modelled 16.4 20
PDB header:transferase
Chain: A: PDB Molecule:cytosolic sulfotransferase 18;
PDBTitle: sulphotransferase-18 from arabidopsis thaliana in complex with 3'-2 phosphoadenosine 5'-phosphate (pap)
80d1msza_



not modelled 16.4 28
Fold:IF3-like
Superfamily:R3H domain
Family:R3H domain
81c1mszA_



not modelled 16.4 28
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein smubp-2;
PDBTitle: solution structure of the r3h domain from human smubp-2
82c5a9q5_



not modelled 15.9 10
PDB header:transport protein
Chain: 5: PDB Molecule:nuclear pore complex protein nup96;
PDBTitle: human nuclear pore complex
83c2wnfA_



not modelled 15.7 14
PDB header:transferase
Chain: A: PDB Molecule:cmp-n-acetylneuraminate-beta-galactosamide-alpha-
PDBTitle: crystal structure of a mammalian sialyltransferase in2 complex with gal-beta-1-3galnac-ortho-nitrophenol
84c2ixaA_



not modelled 15.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase;
PDBTitle: a-zyme, n-acetylgalactosaminidase
85c4hktA_



not modelled 15.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:inositol 2-dehydrogenase;
PDBTitle: crystal structure of a putative myo-inositol dehydrogenase from2 sinorhizobium meliloti 1021 (target psi-012312)
86c1ujlA_



not modelled 15.0 25
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h
PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker
87c2wfbA_



not modelled 14.9 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative uncharacterized protein orp;
PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas
88d1y6ia1



not modelled 14.8 78
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:GUN4-associated domain
89d1nh2a1



not modelled 14.7 14
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
90c4js2A_



not modelled 14.6 22
PDB header:transferase
Chain: A: PDB Molecule:beta-galactoside alpha-2,6-sialyltransferase 1;
PDBTitle: crystal structure of human beta-galactoside alpha-2,6-2 sialyltransferase 1 in complex with cmp
91d1qnaa1



not modelled 14.6 15
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
92c5x62A_



not modelled 14.6 20
PDB header:transferase
Chain: A: PDB Molecule:carnosine n-methyltransferase;
PDBTitle: crystal structure of a carnosine n-methyltransferase bound by adohcy
93c2ovfA_



not modelled 14.6 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:stal;
PDBTitle: crystal structure of stal-pap complex
94c2v3cC_



not modelled 14.5 22
PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
95d2rbka1



not modelled 14.5 20
Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
96c4xxlA_



not modelled 14.4 18
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c class i;
PDBTitle: crystal structure of class 1 cytochrome mtod from sideroxydans2 lithotrophicus es-1
97c6c04J_



not modelled 14.3 27
PDB header:transcription/dna
Chain: J: PDB Molecule:rna polymerase-binding protein rbpa;
PDBTitle: mtb rnap holo/rbpa/double fork dna -closed clamp
98c3u3xJ_



not modelled 14.0 15
PDB header:oxidoreductase
Chain: J: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from sinorhizobium2 meliloti 1021
99d1fi4a2



not modelled 13.8 67
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate 5-diphosphate decarboxylase

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