Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0358_(-)_436861_437508
DateTue Jul 23 14:50:42 BST 2019
Unique Job ID7bd26422fcc8126c
SequenceMYTAENAPGV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.865 Y:47.884 Z:38.309
Model (left) based on template d2jgra1
Top template information
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
Confidence and coverage
Confidence: 99.7% Coverage: 61%
132 residues ( 61% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2jgra1



99.7 13
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
2c2bonB_



99.7 14
PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)
3d2bona1



99.7 14
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
4c2qv7A_



99.6 17
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg
5c3s40C_



99.6 14
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
6d2p1ra1



99.6 14
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
7d2qv7a1



99.6 17
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
8c4werA_



99.6 14
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase catalytic domain protein;
PDBTitle: crystal structure of diacylglycerol kinase catalytic domain protein2 from enterococcus faecalis v583
9c3vzdB_



99.5 18
PDB header:transferase/inhibitor
Chain: B: PDB Molecule:sphingosine kinase 1;
PDBTitle: crystal structure of sphingosine kinase 1 with inhibitor and adp
10d1u0ta_



97.8 12
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
11c3afoB_



97.2 14
PDB header:transferase
Chain: B: PDB Molecule:nadh kinase pos5;
PDBTitle: crystal structure of yeast nadh kinase complexed with nadh
12c2an1D_



97.1 19
PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
13c1yt5A_



97.1 15
PDB header:transferase
Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of nad kinase from thermotoga maritima
14c3pfnB_



96.8 12
PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase
15d1z0sa1



92.6 13
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
16c1z0zC_



92.6 13
PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
17c2i2aA_



92.6 9
PDB header:transferase
Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1;
PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes
18c3opyE_



64.0 11
PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
19c3opyG_



63.2 11
PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
20d2f48a1



54.5 20
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
21c1zxxA_



not modelled 52.7 14
PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
22d2a0ma1



not modelled 44.3 22
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
23c2qipA_



not modelled 41.8 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
24c3o8oC_



not modelled 40.9 8
PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
25c2fu3A_



not modelled 39.7 21
PDB header:biosynthetic protein/structural protein
Chain: A: PDB Molecule:gephyrin;
PDBTitle: crystal structure of gephyrin e-domain
26d2ftsa3



not modelled 39.7 21
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
27c5zeeA_



not modelled 36.6 21
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:arginase;
PDBTitle: crystal structure of entamoeba histolytica arginase in complex with2 n(omega)-hydroxy-l-arginine (noha) at 1.74 a
28c3o8nA_



not modelled 35.8 14
PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase, muscle type;
PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle
29d1v0ea2



not modelled 35.4 27
Fold:Triple-stranded beta-helix
Superfamily:Phage fibre proteins
Family:Endo-alpha-sialidase
30c3o8oB_



not modelled 32.1 13
PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase subunit beta;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
31c4dz4D_



not modelled 31.8 20
PDB header:hydrolase
Chain: D: PDB Molecule:agmatinase;
PDBTitle: x-ray crystal structure of a hypothetical agmatinase from burkholderia2 thailandensis
32c4rhjE_



not modelled 31.5 15
PDB header:unknown function
Chain: E: PDB Molecule:arginase;
PDBTitle: crystal structure of wild-type t. brucei arginase-like protein in a2 reduced form
33c5xoeA_



not modelled 30.1 15
PDB header:transferase
Chain: A: PDB Molecule:atp-dependent 6-phosphofructokinase;
PDBTitle: crystal structure of the apo staphylococcus aureus phosphofructokinase
34c4bgaB_



not modelled 29.5 15
PDB header:transferase
Chain: B: PDB Molecule:predicted molecular chaperone distantly related to
PDBTitle: nucleotide-bound open form of a putative sugar kinase2 mk0840 from methanopyrus kandleri
35c3k2qA_



not modelled 29.1 13
PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
36d4pfka_



not modelled 28.6 15
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
37c2kimA_



not modelled 27.9 15
PDB header:transferase
Chain: A: PDB Molecule:o6-methylguanine-dna methyltransferase;
PDBTitle: 1.7-mm microcryoprobe solution nmr structure of an o6-methylguanine2 dna methyltransferase family protein from vibrio parahaemolyticus.3 northeast structural genomics consortium target vpr247.
38c4kdiC_



not modelled 26.8 20
PDB header:signaling protein/hydrolase
Chain: C: PDB Molecule:ubiquitin thioesterase otu1;
PDBTitle: crystal structure of p97/vcp n in complex with otu1 ubxl
39c2higA_



not modelled 26.6 29
PDB header:transferase
Chain: A: PDB Molecule:6-phospho-1-fructokinase;
PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei.
40c3opyB_



not modelled 26.5 15
PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
41c3opyH_



not modelled 26.5 15
PDB header:transferase
Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
42c2ogxA_



not modelled 25.0 17
PDB header:metal binding protein
Chain: A: PDB Molecule:molybdenum storage protein subunit alpha;
PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto)
43c3nioF_



not modelled 21.6 18
PDB header:hydrolase
Chain: F: PDB Molecule:guanidinobutyrase;
PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase
44d1pfka_



not modelled 20.5 15
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
45d1woha_



not modelled 20.5 24
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
46d1qnta1



not modelled 17.1 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
47c3gx4X_



not modelled 16.9 15
PDB header:dna binding protein/dna
Chain: X: PDB Molecule:alkyltransferase-like protein 1;
PDBTitle: crystal structure analysis of s. pombe atl in complex with dna
48c1wx4B_



not modelled 16.3 25
PDB header:oxidoreductase/metal transport
Chain: B: PDB Molecule:melc;
PDBTitle: crystal structure of the oxy-form of the copper-bound streptomyces2 castaneoglobisporus tyrosinase complexed with a caddie protein3 prepared by the addition of dithiothreitol
49c5ynlA_



not modelled 16.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:arginase;
PDBTitle: crystal structure of a cold-adapted arginase from psychrophilic yeast,2 glaciozyma antarctica
50c3louB_



not modelled 15.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution
51c4au1A_



not modelled 15.1 16
PDB header:isomerase
Chain: A: PDB Molecule:precorrin-8x methylmutase;
PDBTitle: crystal structure of cobh (precorrin-8x methyl mutase)2 complexed with c5 desmethyl-hba
52d1zpda3



not modelled 15.1 19
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
53d1ozha3



not modelled 15.0 16
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
54c4g3hC_



not modelled 14.5 9
PDB header:hydrolase
Chain: C: PDB Molecule:arginase (rocf);
PDBTitle: crystal structure of helicobacter pylori arginase
55c3o1lB_



not modelled 14.1 21
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
56d1gr0a1



not modelled 14.1 32
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
57d1sfea1



not modelled 13.9 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
58c4f6tA_



not modelled 13.5 17
PDB header:metal binding protein
Chain: A: PDB Molecule:molybdenum storage protein subunit alpha;
PDBTitle: the crystal structure of the molybdenum storage protein (mosto) from2 azotobacter vinelandii loaded with various polyoxometalates
59d1ybha3



not modelled 13.3 11
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
60c1v0eB_



not modelled 13.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:endo-alpha-sialidase;
PDBTitle: endosialidase of bacteriophage k1f
61c3iauA_



not modelled 11.9 13
PDB header:lyase
Chain: A: PDB Molecule:threonine deaminase;
PDBTitle: the structure of the processed form of threonine deaminase isoform 22 from solanum lycopersicum
62d2djia3



not modelled 11.8 13
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
63d1jsca3



not modelled 11.6 25
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
64d2ez9a3



not modelled 11.5 13
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
65d1t9ba3



not modelled 11.3 24
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
66d2ihta3



not modelled 11.2 16
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
67d1ovma3



not modelled 11.1 19
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
68c4gr5B_



not modelled 10.8 20
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of slgn1deltaasub in complex with ampcpp
69d1vhva_



not modelled 10.2 15
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
70c1sfeA_



not modelled 9.9 22
PDB header:dna-binding protein
Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase;
PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli
71d2cvea2



not modelled 9.7 30
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:YigZ C-terminal domain-like
72c1uz5A_



not modelled 9.3 8
PDB header:molybdopterin biosynthesis
Chain: A: PDB Molecule:402aa long hypothetical molybdopterin
PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii
73d1ou0a_



not modelled 9.1 13
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
74d1q6za3



not modelled 8.6 13
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
75c3mmrA_



not modelled 8.5 10
PDB header:hydrolase
Chain: A: PDB Molecule:arginase;
PDBTitle: structure of plasmodium falciparum arginase in complex with abh
76c4iu1A_



not modelled 8.5 13
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:arginase;
PDBTitle: crystal structure of leishmania mexicana arginase in complex with2 inhibitor nor-noha
77c3n0vD_



not modelled 8.0 28
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
78c4bhcA_



not modelled 7.9 19
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of the m. tuberculosis o6-methylguanine2 methyltransferase r37l variant
79c3qk9B_



not modelled 7.7 38
PDB header:protein transport
Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3
80c3w7bB_



not modelled 7.5 21
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase from thermus2 thermophilus hb8
81c2e0kA_



not modelled 7.5 14
PDB header:transferase
Chain: A: PDB Molecule:precorrin-2 c20-methyltransferase;
PDBTitle: crystal structure of cbil, a methyltransferase involved in anaerobic2 vitamin b12 biosynthesis
82d2ceva_



not modelled 7.4 20
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
83c6n2oB_



not modelled 7.2 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyruvate ferredoxin/flavodoxin oxidoreductase, beta
PDBTitle: 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus2 with 2-oxoglutarate, coenzyme a and succinyl-coa bound
84c5b46B_



not modelled 7.1 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoacid--ferredoxin oxidoreductase beta subunit;
PDBTitle: 2-oxoacid:ferredoxin oxidoreductase 2 from sulfolobus tokodai - ligand2 free form
85d2fgca2



not modelled 6.9 19
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
86c3m1rF_



not modelled 6.9 11
PDB header:hydrolase
Chain: F: PDB Molecule:formimidoylglutamase;
PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168
87c3nrbD_



not modelled 6.7 33
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution
88d1l9xa_



not modelled 6.7 20
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
89c1l9xA_



not modelled 6.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyl hydrolase;
PDBTitle: structure of gamma-glutamyl hydrolase
90c1t39A_



not modelled 6.6 22
PDB header:transferase/dna
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna
91d1ep3b2



not modelled 6.6 23
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Dihydroorotate dehydrogenase B, PyrK subunit
92c2mdpA_



not modelled 6.3 40
PDB header:viral protein
Chain: A: PDB Molecule:gene 1.2 protein;
PDBTitle: the bacteriophage t7 encoded inhibitor (gp1.2) of e. coli dgtp2 triphosphohydrolase
93c5d5pC_



not modelled 6.0 13
PDB header:transferase
Chain: C: PDB Molecule:hcgb;
PDBTitle: hcgb from methanococcus maripaludis
94c2l8bA_



not modelled 6.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:protein trai;
PDBTitle: trai (381-569)
95c3l3bA_



not modelled 5.7 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
96c5wmmA_



not modelled 5.5 29
PDB header:biosynthetic protein
Chain: A: PDB Molecule:nrps;
PDBTitle: crystal structure of an adenylation domain interrupted by a2 methylation domain (ama4) from nonribosomal peptide synthetase tios
97c2pc6C_



not modelled 5.5 22
PDB header:lyase
Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit);
PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea
98d2ji7a3



not modelled 5.4 18
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
99d1f2da_



not modelled 5.3 10
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes

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