Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0360c_(-)_438303_438740
DateTue Jul 23 14:50:43 BST 2019
Unique Job IDb4ef6b5315ac380c
SequenceVTKRTITPMT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.437 Y:32.320 Z:32.294
Model (left) based on template d1bxca_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
Confidence and coverage
Confidence: 76.6% Coverage: 39%
56 residues ( 39% of your sequence) have been modelled with 76.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1bxca_



76.6 32
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
2c5v2gB_



61.2 50
PDB header:de novo protein
Chain: B: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
3c5v2gA_



61.2 50
PDB header:de novo protein
Chain: A: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
4c5v2gC_



61.2 50
PDB header:de novo protein
Chain: C: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
5c5fjsB_



58.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:glucosylceramidase;
PDBTitle: bacterial beta-glucosidase reveals the structural and functional2 basis of genetic defects in human glucocerebrosidase 2 (gba2)3 disorders
6d1bxba_



55.7 31
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
7c2ww1B_



53.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside
8c5swiD_



37.3 16
PDB header:hydrolase
Chain: D: PDB Molecule:sugar hydrolase;
PDBTitle: crystal structure of spgh92 in complex with mannose
9c3f1iS_



36.4 28
PDB header:protein binding
Chain: S: PDB Molecule:signal transducing adapter molecule 1;
PDBTitle: human escrt-0 core complex
10c3ktcB_



30.6 11
PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution
11c4ozwA_



30.4 23
PDB header:lyase
Chain: A: PDB Molecule:alginate lyase;
PDBTitle: crystal structure of the periplasmic alginate lyase algl h202a mutant
12c2l3gA_



21.7 31
PDB header:signaling protein
Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 7;
PDBTitle: solution nmr structure of ch domain of rho guanine nucleotide exchange2 factor 7 from homo sapiens, northeast structural genomics consortium3 target hr4495e
13d1iq0a1



21.2 22
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
14c3mkqB_



20.2 24
PDB header:transport protein
Chain: B: PDB Molecule:coatomer subunit alpha;
PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat
15c4madA_



17.8 23
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase c (bgac) from bacillus2 circulans atcc 31382
16c2ihmA_



16.9 42
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna duplex and2 bound incoming nucleotide
17d1f7ua1



16.2 17
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
18c4c9bB_



15.6 19
PDB header:splicing
Chain: B: PDB Molecule:pre-mrna-splicing factor cwc22 homolog;
PDBTitle: crystal structure of eif4aiii-cwc22 complex
19c2m35A_



15.4 78
PDB header:toxin
Chain: A: PDB Molecule:k-ssm1a;
PDBTitle: nmr study of k-ssm1a
20d1muwa_



14.9 31
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
21c4zlgA_



not modelled 14.8 14
PDB header:transferase
Chain: A: PDB Molecule:putative b-glycan phosphorylase;
PDBTitle: cellobionic acid phosphorylase - gluconic acid complex
22d1c6vx_



not modelled 13.6 71
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
23c1c6vX_



not modelled 13.6 71
PDB header:dna binding protein
Chain: X: PDB Molecule:protein (siu89134);
PDBTitle: siv integrase (catalytic domain + dna biding domain comprising2 residues 50-293) mutant with phe 185 replaced by his (f185h)
24d1qt1a_



not modelled 12.9 31
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
25c4gmnA_



not modelled 12.1 13
PDB header:rna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structural basis of rpl5 recognition by syo1
26c2gm4B_



not modelled 12.0 30
PDB header:recombination, dna
Chain: B: PDB Molecule:transposon gamma-delta resolvase;
PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna
27c3ty8A_



not modelled 11.6 32
PDB header:transferase
Chain: A: PDB Molecule:polynucleotide 2',3'-cyclic phosphate phosphodiesterase /
PDBTitle: crystal structure of c. thermocellum pnkp ligase domain apo form
28c4e6nC_



not modelled 11.4 32
PDB header:protein binding
Chain: C: PDB Molecule:metallophosphoesterase;
PDBTitle: crystal structure of bacterial pnkp-c/hen1-n heterodimer
29c1wynA_



not modelled 11.1 24
PDB header:structural protein
Chain: A: PDB Molecule:calponin-2;
PDBTitle: solution structure of the ch domain of human calponin-2
30c5wftA_



not modelled 9.9 20
PDB header:structural protein
Chain: A: PDB Molecule:pelb;
PDBTitle: pelb 319-436 from pseudomonas aeruginosa pao1
31c4luqD_



not modelled 9.3 45
PDB header:protein binding/toxin inhibitor
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of virulence effector tse3 in complex with2 neutralizer tsi3
32d2pqrb1



not modelled 9.3 21
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
33c5a1uC_



not modelled 9.2 28
PDB header:transport protein
Chain: C: PDB Molecule:coatomer subunit alpha;
PDBTitle: the structure of the copi coat triad
34d1y8ma1



not modelled 9.2 21
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
35c5dseC_



not modelled 9.1 17
PDB header:protein binding
Chain: C: PDB Molecule:tetratricopeptide repeat protein 7b;
PDBTitle: crystal structure of the ttc7b/hyccin complex
36c3p6lA_



not modelled 9.1 19
PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution
37c5ikjB_



not modelled 8.7 71
PDB header:transcription
Chain: B: PDB Molecule:cryptic loci regulator protein 1;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
38c2i2oB_



not modelled 8.7 57
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:eif4g-like protein;
PDBTitle: crystal structure of an eif4g-like protein from danio rerio
39c2hk1D_



not modelled 8.6 11
PDB header:isomerase
Chain: D: PDB Molecule:d-psicose 3-epimerase;
PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose
40d1ex4a1



not modelled 8.5 71
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
41d1kpta_



not modelled 8.3 37
Fold:Yeast killer toxins
Superfamily:Yeast killer toxins
Family:Virally encoded KP4 toxin
42d1ihwa_



not modelled 8.3 71
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
43c6f90A_



not modelled 8.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,2-mannosidase, putative;
PDBTitle: structure of the family gh92 alpha-mannosidase bt3130 from bacteroides2 thetaiotaomicron in complex with mannoimidazole (mani)
44c2rbaB_



not modelled 8.0 24
PDB header:hydrolase/dna
Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase;
PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna
45c1wymA_



not modelled 7.6 20
PDB header:structural protein
Chain: A: PDB Molecule:transgelin-2;
PDBTitle: solution structure of the ch domain of human transgelin-2
46c4l3uA_



not modelled 7.4 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3571 family protein (abaye3784) from2 acinetobacter baumannii aye at 1.95 a resolution
47c3nzkB_



not modelled 7.3 39
PDB header:hydrolase
Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor
48c5lc5D_



not modelled 7.2 45
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 2,
PDBTitle: structure of mammalian respiratory complex i, class2
49c3thdD_



not modelled 7.2 35
PDB header:hydrolase
Chain: D: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin
50d1mpga2



not modelled 7.2 22
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:DNA repair glycosylase, N-terminal domain
51d1zu2a1



not modelled 7.1 9
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
52d1v29b_



not modelled 7.1 33
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
53c3hluA_



not modelled 7.1 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein duf2179;
PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum
54c3j3vE_



not modelled 7.1 31
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l4;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
55c3c66C_



not modelled 7.0 63
PDB header:transferase
Chain: C: PDB Molecule:pre-mrna polyadenylation factor fip1;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
56c6gcsC_



not modelled 6.9 45
PDB header:oxidoreductase
Chain: C: PDB Molecule:49-kda protein (nucm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
57c3c66D_



not modelled 6.9 63
PDB header:transferase
Chain: D: PDB Molecule:pre-mrna polyadenylation factor fip1;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
58c4yl8B_



not modelled 6.9 32
PDB header:protein binding
Chain: B: PDB Molecule:protein crumbs;
PDBTitle: crystal structure of the crumbs/moesin complex
59c3j3bq_



not modelled 6.7 6
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the human 60s ribosomal proteins
60c6bs7A_



not modelled 6.7 53
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase from legionella2 pneumophila philadelphia 1
61d1hh5a_



not modelled 6.5 28
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Cytochrome c3-like
62c4e8cA_



not modelled 6.4 40
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase, family 35;
PDBTitle: crystal structure of streptococcal beta-galactosidase in complex with2 galactose
63d1pc2a_



not modelled 6.3 16
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
64d2btva_



not modelled 6.3 38
Fold:Reovirus inner layer core protein p3
Superfamily:Reovirus inner layer core protein p3
Family:Orbivirus core
65d2cy3a_



not modelled 6.2 30
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Cytochrome c3-like
66c2btvB_



not modelled 6.2 38
PDB header:virus
Chain: B: PDB Molecule:protein (vp3 core protein);
PDBTitle: atomic model for bluetongue virus (btv) core
67c3iz5s_



not modelled 6.1 12
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
68d1hx7a_



not modelled 6.1 32
Fold:Resolvase-like
Superfamily:Resolvase-like
Family:gamma,delta resolvase, catalytic domain
69d1te4a_



not modelled 6.0 20
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:PBS lyase HEAT-like repeat
70c5mlc2_



not modelled 6.0 36
PDB header:ribosome
Chain: 2: PDB Molecule:50s ribosomal protein l32, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
71c5f5nA_



not modelled 5.8 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:monooxygenase;
PDBTitle: the structure of monooxygenase ksta11 in complex with nad and its2 substrate
72c4ijyA_



not modelled 5.7 55
PDB header:unknown function
Chain: A: PDB Molecule:cofj;
PDBTitle: crystal structure of the etec secreted protein cofj
73c4cimQ_



not modelled 5.6 46
PDB header:apoptosis
Chain: Q: PDB Molecule:bcl-2-like protein 2;
PDBTitle: complex of a bcl-w bh3 mutant with a bh3 domain
74c4cimP_



not modelled 5.6 46
PDB header:apoptosis
Chain: P: PDB Molecule:bcl-2-like protein 2;
PDBTitle: complex of a bcl-w bh3 mutant with a bh3 domain
75c3h4nB_



not modelled 5.5 27
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c7;
PDBTitle: ppcd, a cytochrome c7 from geobacter sulfurreducens
76c2lsqA_



not modelled 5.4 63
PDB header:immune system
Chain: A: PDB Molecule:analog of the fragment 197-221 of beta-1 adrenoreceptor;
PDBTitle: analog of the fragment 197-221 of beta-1 adrenoreceptor
77c1lv4A_



not modelled 5.4 50
PDB header:signaling protein
Chain: A: PDB Molecule:catestatin;
PDBTitle: human catestatin 21-mer
78c5n4aA_



not modelled 5.4 15
PDB header:transport protein
Chain: A: PDB Molecule:intraflagellar transport protein 80;
PDBTitle: crystal structure of chlamydomonas ift80
79c2c2pA_



not modelled 5.3 28
PDB header:hydrolase
Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase;
PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans
80c5ncrA_



not modelled 5.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine phosphatase;
PDBTitle: oh1 from the orf virus: a tyrosine phosphatase that displays distinct2 structural features and triple substrate specificity
81c3izcs_



not modelled 5.3 6
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
82d1hu3a_



not modelled 5.2 30
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
83d1rwja_



not modelled 5.1 40
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Cytochrome c3-like
84c6f92B_



not modelled 5.1 23
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 alpha-mannosidase bt3965 from bacteroides2 thetaiotaomicron in complex with mannoimidazole (mani)

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