Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0367c_(-)_444845_445234
DateTue Jul 23 14:50:43 BST 2019
Unique Job IDdcbbb513fe994e94
SequenceVPKAVDRVTR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.458 Y:30.093 Z:33.345
Model (left) based on template c1u9pA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
Confidence and coverage
Confidence: 87.8% Coverage: 45%
58 residues ( 45% of your sequence) have been modelled with 87.8% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1u9pA_



87.8 12
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
2d1mnta_



80.7 15
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
3c3qoqC_



80.0 14
PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
4c3bfmA_



43.3 11
PDB header:unknown function
Chain: A: PDB Molecule:biotin protein ligase-like protein of unknown function;
PDBTitle: crystal structure of a biotin protein ligase-like protein of unknown2 function (tm1040_0394) from silicibacter sp. tm1040 at 1.70 a3 resolution
5d2ay0a1



42.2 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:PutA pre-N-terminal region-like
6c6iyaD_



38.9 17
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
7c5j2yA_



38.3 44
PDB header:gene regulation/dna
Chain: A: PDB Molecule:regulatory protein;
PDBTitle: molecular insight into the regulatory mechanism of the quorum-sensing2 repressor rsal in pseudomonas aeruginosa
8d1x4ta1



35.6 25
Fold:Long alpha-hairpin
Superfamily:ISY1 domain-like
Family:ISY1 N-terminal domain-like
9c2rbfB_



35.3 9
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
10d1tueb_



33.5 12
Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
11c4u1eB_



25.7 14
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b;
PDBTitle: crystal structure of the eif3b-ctd/eif3i/eif3g-ntd translation2 initiation complex
12c6f0hD_



24.1 24
PDB header:chaperone
Chain: D: PDB Molecule:ip4;
PDBTitle: crystal structure asf1-ip4
13c6f0hB_



23.9 24
PDB header:chaperone
Chain: B: PDB Molecule:ip4;
PDBTitle: crystal structure asf1-ip4
14d2proc1



20.7 21
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
15d1b2pa_



16.9 15
Fold:beta-Prism II
Superfamily:alpha-D-mannose-specific plant lectins
Family:alpha-D-mannose-specific plant lectins
16c5whaF_



16.4 33
PDB header:protein binding
Chain: F: PDB Molecule:miniprotein 225-11;
PDBTitle: kras g12v, bound to gdp and miniprotein 225-11
17d1rk8c_



14.8 83
Fold:WW domain-like
Superfamily:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
Family:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
18c1rk8C_



14.8 83
PDB header:translation
Chain: C: PDB Molecule:within the bgcn gene intron protein;
PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex
19d2g3ba2



13.7 23
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
20c4pdtA_



13.3 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:mannose recognizing lectin;
PDBTitle: japanese marasmius oreades lectin
21d1bazb_



not modelled 13.0 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
22d1u9pa1



not modelled 12.9 14
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
23d1pn0a2



not modelled 12.7 50
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
24c6hbbA_



not modelled 12.5 50
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein ccmm;
PDBTitle: crystal structure of the small subunit-like domain 1 of ccmm from2 synechococcus elongatus (strain pcc 7942)
25d1myka_



not modelled 11.6 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
26d1bdta_



not modelled 10.9 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
27d1p94a_



not modelled 10.9 23
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
28d3er7a1



not modelled 10.8 38
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Exig0174-like
29c2jeuA_



not modelled 10.6 10
PDB header:transcription
Chain: A: PDB Molecule:regulatory protein e2;
PDBTitle: transcription activator structure reveals redox control of a2 replication initiation reaction
30d1baza_



not modelled 10.5 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
31c6c48E_



not modelled 10.2 12
PDB header:cell cycle/dna binding
Chain: E: PDB Molecule:protein lin-52 homolog;
PDBTitle: crystal structure of b-myb-lin9-lin52 complex
32c1fyfB_



not modelled 10.2 5
PDB header:ligase
Chain: B: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of a truncated form of threonyl-trna2 synthetase complexed with a seryl adenylate analog
33d1kx5b_



not modelled 9.7 12
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
34d1dlpa1



not modelled 9.6 19
Fold:beta-Prism II
Superfamily:alpha-D-mannose-specific plant lectins
Family:alpha-D-mannose-specific plant lectins
35d1r6na_



not modelled 9.3 13
Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
36c6b2zd_



not modelled 9.1 30
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
37d1biaa2



not modelled 8.6 4
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Biotin repressor (BirA)
38c4xmnB_



not modelled 8.5 25
PDB header:protein transport
Chain: B: PDB Molecule:nucleoporin nup145;
PDBTitle: structure of the yeast coat nucleoporin complex, space group p212121
39c1tueG_



not modelled 8.1 16
PDB header:replication
Chain: G: PDB Molecule:regulatory protein e2;
PDBTitle: the x-ray structure of the papillomavirus helicase in2 complex with its molecular matchmaker e2
40c4uy87_



not modelled 7.9 55
PDB header:ribosome
Chain: 7: PDB Molecule:tryptophanase;
PDB Fragment:residues 7-85; PDBTitle: molecular basis for the ribosome functioning as a l-tryptophan sensor2 - cryo-em structure of a tnac stalled e.coli ribosome
41c4i1oD_



not modelled 7.7 25
PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:lepb;
PDBTitle: crystal structure of the legionella pneumophila gap domain of lepb in2 complex with rab1b bound to gdp and bef3
42d2nnua1



not modelled 7.4 10
Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
43c2w0cR_



not modelled 7.4 30
PDB header:virus
Chain: R: PDB Molecule:protein p3;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
44c3j47O_



not modelled 7.1 28
PDB header:protein binding
Chain: O: PDB Molecule:26s proteasome regulatory subunit rpn9;
PDBTitle: formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
45d1nl1a2



not modelled 6.8 27
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
46d2cosa1



not modelled 6.5 23
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
47c6mcjA_



not modelled 6.4 22
PDB header:protein binding
Chain: A: PDB Molecule:orange carotenoid-binding protein;
PDBTitle: structure of helical carotenoid protein 2 from fremyella diplosiphon
48d1v2za_



not modelled 6.4 24
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
49d1mylb_



not modelled 6.3 12
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
50c2rmgA_



not modelled 6.3 25
PDB header:hormone
Chain: A: PDB Molecule:urocortin-2;
PDBTitle: human urocortin 2
51c2yh5A_



not modelled 6.3 23
PDB header:lipid binding protein
Chain: A: PDB Molecule:dapx protein;
PDBTitle: structure of the c-terminal domain of bamc
52c2zzxD_



not modelled 6.1 11
PDB header:transport protein
Chain: D: PDB Molecule:abc transporter, solute-binding protein;
PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate
53d2p4oa1



not modelled 6.0 18
Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:All0351-like
54d1r8ja1



not modelled 6.0 28
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
55d1sv1a_



not modelled 5.6 24
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
56d1s29a_



not modelled 5.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:La domain
57d1uxca_



not modelled 5.6 9
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
58d1g5ta_



not modelled 5.5 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
59d1toha_



not modelled 5.5 17
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
60d1uxda_



not modelled 5.4 9
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
61c3u65B_



not modelled 5.2 9
PDB header:transport protein
Chain: B: PDB Molecule:tp33 protein;
PDBTitle: the crystal structure of tat-p(t) (tp0957)
62d1q1va_



not modelled 5.2 17
Fold:Another 3-helical bundle
Superfamily:DEK C-terminal domain
Family:DEK C-terminal domain
63d1jm6a1



not modelled 5.1 14
Fold:Bromodomain-like
Superfamily:alpha-ketoacid dehydrogenase kinase, N-terminal domain
Family:alpha-ketoacid dehydrogenase kinase, N-terminal domain

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