Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0379_(secE2)_455978_456193
DateTue Jul 23 14:50:45 BST 2019
Unique Job ID19a2e4947be96934
SequenceMSVYKVIDII ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.950 Y:32.801 Z:38.627
Model (left) based on template c3onrI_
Top template information
PDB header:metal binding protein
Chain: I: PDB Molecule:protein transport protein sece2;
PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site
Confidence and coverage
Confidence:100.0% Coverage: 99%
70 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3onrI_



100.0 97
PDB header:metal binding protein
Chain: I: PDB Molecule:protein transport protein sece2;
PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site
2c3oqtP_



99.9 21
PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis
3c6r1eC_



99.9 23
PDB header:flavoprotein
Chain: C: PDB Molecule:dodecin;
PDBTitle: structure of dodecin from streptomyces coelicolor
4c2vxaL_



99.9 23
PDB header:flavoprotein
Chain: L: PDB Molecule:dodecin;
PDBTitle: h.halophila dodecin in complex with riboflavin
5d2ux9a1



99.9 33
Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
6d2cc6a1



99.5 31
Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
7c5lw8A_



53.1 19
PDB header:metal transport
Chain: A: PDB Molecule:protein tonb;
PDBTitle: nmr solution structure of helicobacter pylori tonb-ctd (residues 194-2 285)
8d1ulqa2



45.9 23
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
9c6fipA_



38.9 12
PDB header:transport protein
Chain: A: PDB Molecule:protein tonb;
PDBTitle: solution nmr structure of pseudomonas aeruginosa tonb ctd
10d1m3ka2



30.5 23
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
11c4ubwB_



30.4 18
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase fada5;
PDBTitle: apo structure of the 3-ketoacyl-coa thiolase fada5 from m.2 tuberculosis
12d1fc3a_



26.5 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:Spo0A
13d1qd1a1



26.4 26
Fold:Ferredoxin-like
Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
14d1lq1a_



25.4 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:Spo0A
15d1wdkc2



24.9 23
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
16c1ulqD_



24.0 21
PDB header:transferase
Chain: D: PDB Molecule:putative acetyl-coa acetyltransferase;
PDBTitle: crystal structure of tt0182 from thermus thermophilus hb8
17c2jxpA_



22.9 11
PDB header:lipoprotein
Chain: A: PDB Molecule:putative lipoprotein b;
PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a
18c3svkB_



22.8 20
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of acetyl-coa acetyltransferase from mycobacterium2 avium
19c3brtC_



22.8 17
PDB header:transferase/transcription
Chain: C: PDB Molecule:inhibitor of nuclear factor kappa-b kinase subunit beta,
PDBTitle: nemo/ikk association domain structure
20c1wl5A_



22.4 21
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coenzyme a acetyltransferase 2;
PDBTitle: human cytosolic acetoacetyl-coa thiolase
21c2ibyD_



not modelled 21.2 21
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystallographic and kinetic studies of human mitochondrial2 acetoacetyl-coa thiolase (t2): the importance of potassium and3 chloride for its structure and function
22d1kwia_



not modelled 21.0 32
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cathelicidin motif
23c3o6uB_



not modelled 20.9 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein cpe2226;
PDBTitle: crystal structure of cpe2226 protein from clostridium perfringens.2 northeast structural genomics consortium target cpr195
24d1afwa2



not modelled 20.6 16
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
25c2k9kA_



not modelled 20.5 21
PDB header:metal transport
Chain: A: PDB Molecule:tonb2;
PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum
26c4c2jA_



not modelled 20.0 21
PDB header:transferase
Chain: A: PDB Molecule:3-ketoacyl-coa thiolase, mitochondrial;
PDBTitle: crystal structure of human mitochondrial 3-ketoacyl-coa2 thiolase in complex with coa
27c4e1lC_



not modelled 19.3 25
PDB header:transferase
Chain: C: PDB Molecule:acetoacetyl-coa thiolase 2;
PDBTitle: crystal structure of acetoacetyl-coa thiolase (thla2) from clostridium2 difficile
28c2m2kA_



not modelled 18.4 15
PDB header:transport protein
Chain: A: PDB Molecule:hasb protein;
PDBTitle: the structure of hasb ctd
29c2d9zA_



not modelled 18.1 36
PDB header:signaling protein
Chain: A: PDB Molecule:protein kinase c, nu type;
PDBTitle: solution structure of the ph domain of protein kinase c, nu2 type from human
30c4h62Q_



not modelled 18.1 21
PDB header:transcription
Chain: Q: PDB Molecule:mediator of rna polymerase ii transcription subunit 17;
PDBTitle: structure of the saccharomyces cerevisiae mediator subcomplex2 med17c/med11c/med22c
31c6bn2A_



not modelled 18.1 21
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of acetyl-coa acetyltransferase from elizabethkingia2 anophelis nuhp1
32c5oarC_



not modelled 16.8 28
PDB header:hydrolase
Chain: C: PDB Molecule:beta-hexosaminidase;
PDBTitle: crystal structure of native beta-n-acetylhexosaminidase isolated from2 aspergillus oryzae
33c4egvC_



not modelled 16.7 21
PDB header:transferase
Chain: C: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of a monomeric scp2-thiolase like protein type 12 (stlp1) from mycobacterium smegmatis
34d2dy1a3



not modelled 16.6 17
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
35c4q35B_



not modelled 16.4 12
PDB header:membrane protein
Chain: B: PDB Molecule:lps-assembly lipoprotein lpte;
PDBTitle: structure of a membrane protein
36c1tt9B_



not modelled 15.4 26
PDB header:transferase, lyase
Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase
PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer
37c3ss6B_



not modelled 15.2 11
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of the bacillus anthracis acetyl-coa2 acetyltransferase
38c5vidI_



not modelled 15.1 40
PDB header:toxin
Chain: I: PDB Molecule:bot.0671.2;
PDBTitle: receptor binding domain of bont/b in complex with mini-protein binder2 bot.0671.2
39c5vidG_



not modelled 15.1 40
PDB header:toxin
Chain: G: PDB Molecule:bot.0671.2;
PDBTitle: receptor binding domain of bont/b in complex with mini-protein binder2 bot.0671.2
40d1tola2



not modelled 14.8 20
Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TolA
41c2iikA_



not modelled 14.3 21
PDB header:transferase
Chain: A: PDB Molecule:3-ketoacyl-coa thiolase, peroxisomal;
PDBTitle: crystal structure of human peroxisomal acetyl-coa acyl transferase 12 (acaa1)
42c4nzsA_



not modelled 13.8 25
PDB header:transferase
Chain: A: PDB Molecule:beta-ketothiolase bktb;
PDBTitle: crystal structure of beta-ketothiolase bktb b from ralstonia eutropha2 h16
43c5ab6E_



not modelled 13.6 29
PDB header:transport protein
Chain: E: PDB Molecule:scp2-thiolase like protein;
PDBTitle: crystal structure of trypanosoma brucei scp2-thiolase like2 protein (tbslp) in complex with acetoacetyl-coa.
44c4g7xB_



not modelled 12.7 11
PDB header:protein binding/protein binding
Chain: B: PDB Molecule:tola protein;
PDBTitle: crystal structure of a complex between the ctxphi piii n-terminal2 domain and the vibrio cholerae tola c-terminal domain
45c3gkuB_



not modelled 12.7 14
PDB header:rna binding protein
Chain: B: PDB Molecule:probable rna-binding protein;
PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940
46d2bv3a3



not modelled 12.5 11
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
47c4ycsC_



not modelled 12.4 28
PDB header:hydrolase
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative lipoprotein from peptoclostridium2 difficile 630 (fragment)
48c3goaA_



not modelled 12.2 25
PDB header:transferase
Chain: A: PDB Molecule:3-ketoacyl-coa thiolase;
PDBTitle: crystal structure of the salmonella typhimurium fada 3-ketoacyl-coa2 thiolase
49c4n45B_



not modelled 12.1 18
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of reduced form of thiolase from clostridium2 acetobutylicum
50d1vkza1



not modelled 12.1 28
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
51c1qd1A_



not modelled 12.1 26
PDB header:transferase
Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase;
PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase.
52d2pjua1



not modelled 12.0 28
Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
53c2zkqe_



not modelled 12.0 22
PDB header:ribosomal protein/rna
Chain: E: PDB Molecule:rna expansion segment es6 part ii;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
54d1dwna_



not modelled 11.8 29
Fold:RNA bacteriophage capsid protein
Superfamily:RNA bacteriophage capsid protein
Family:RNA bacteriophage capsid protein
55d1nfpa_



not modelled 11.5 31
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
56c3hz4A_



not modelled 11.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from methanosarcina mazei
57d2uube2



not modelled 10.8 16
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
58c2ow8f_



not modelled 10.6 23
PDB header:ribosome
Chain: F: PDB Molecule:
PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa.
59c6bjaA_



not modelled 10.6 7
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coa acetyltransferase a;
PDBTitle: crystal structure of acat5 thiolase from ascaris suum in complex with2 coenzyme a
60d1pkpa2



not modelled 10.6 16
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
61c1afwB_



not modelled 10.5 14
PDB header:thiolase
Chain: B: PDB Molecule:3-ketoacetyl-coa thiolase;
PDBTitle: the 1.8 angstrom crystal structure of the dimeric2 peroxisomal thiolase of saccharomyces cerevisiae
62c6q2zB_



not modelled 10.5 17
PDB header:unknown function
Chain: B: PDB Molecule:upf0339 family protein;
PDBTitle: nmr solution structure of the hvo_2922 protein from haloferax volcanii
63d2qale2



not modelled 10.4 15
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
64c1gshA_



not modelled 10.2 29
PDB header:glutathione biosynthesis ligase
Chain: A: PDB Molecule:glutathione biosynthetic ligase;
PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5
65c2c7yB_



not modelled 10.0 25
PDB header:transferase
Chain: B: PDB Molecule:3-ketoacyl-coa thiolase 2;
PDBTitle: plant enzyme
66c2x9aB_



not modelled 10.0 26
PDB header:viral protein
Chain: B: PDB Molecule:membrane spanning protein, required for outer membrane
PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola
67c6bjbB_



not modelled 9.7 10
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase a;
PDBTitle: crystal structure of acat2-c91s thiolase from ascaris suum in complex2 with propionyl-coa and nitrate
68c3brvC_



not modelled 9.6 17
PDB header:transferase/transcription
Chain: C: PDB Molecule:inhibitor of nuclear factor kappa-b kinase subunit beta;
PDBTitle: nemo/ikkb association domain structure
69d1r4ca_



not modelled 9.5 19
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cystatins
70c6aqpA_



not modelled 9.4 21
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: aspergillus fumigatus cytosolic thiolase: acetylated enzyme in complex2 with coa and potassium ions
71d3eeqa1



not modelled 9.3 7
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
72c4wysB_



not modelled 9.3 21
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of thiolase from escherichia coli
73d1gsoa1



not modelled 9.3 16
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
74c2wuaA_



not modelled 9.1 25
PDB header:transferase
Chain: A: PDB Molecule:acetoacetyl coa thiolase;
PDBTitle: structure of the peroxisomal 3-ketoacyl-coa thiolase from sunflower
75d1ihra_



not modelled 9.1 21
Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TonB
76d1w26a2



not modelled 9.0 24
Fold:Ribosome binding domain-like
Superfamily:Trigger factor ribosome-binding domain
Family:Trigger factor ribosome-binding domain
77c4x8wE_



not modelled 8.9 27
PDB header:gene regulation
Chain: E: PDB Molecule:loquacious, isoform b;
PDBTitle: dsrbd3 of loquacious
78c2kzxA_



not modelled 8.8 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a3dht5 from clostridium thermocellum,2 northeast structural genomics consortium target cmr116
79d1e5ma2



not modelled 8.8 11
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
80c4eycA_



not modelled 8.7 17
PDB header:unknown function
Chain: A: PDB Molecule:cathelicidin antimicrobial peptide;
PDBTitle: crystal structure of the cathelin-like domain of human cathelicidin2 ll-37 (hcld)
81d1p9ya_



not modelled 8.6 21
Fold:Ribosome binding domain-like
Superfamily:Trigger factor ribosome-binding domain
Family:Trigger factor ribosome-binding domain
82c3hk4B_



not modelled 8.3 18
PDB header:lyase
Chain: B: PDB Molecule:mlr7391 protein;
PDBTitle: crystal structure of a putative snoal-like polyketide cyclase2 [carbohydrate phosphatase] (mlr7391) from mesorhizobium loti at 1.963 a resolution
83d3by5a1



not modelled 8.2 19
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
84c3by5A_



not modelled 8.2 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein;
PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58
85c1eg0B_



not modelled 8.2 13
PDB header:ribosome
PDB COMPND:
86c3bbnE_



not modelled 8.2 19
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein s5;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
87c5xyiC_



not modelled 8.1 24
PDB header:ribosome
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: small subunit of trichomonas vaginalis ribosome
88d2w6ka1



not modelled 8.1 11
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
89d2coaa1



not modelled 8.1 36
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Pleckstrin-homology domain (PH domain)
90c2d3tC_



not modelled 8.1 23
PDB header:lyase, oxidoreductase/transferase
Chain: C: PDB Molecule:3-ketoacyl-coa thiolase;
PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v
91d1eiwa_



not modelled 8.0 21
Fold:Flavodoxin-like
Superfamily:Hypothetical protein MTH538
Family:Hypothetical protein MTH538
92c2pjuD_



not modelled 8.0 29
PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon regulatory protein2 prpr
93c5z79F_



not modelled 7.9 21
PDB header:transferase
Chain: F: PDB Molecule:hydroxymethyldihydropterin pyrophosphokinase-
PDBTitle: crystal structure analysis of the hppk-dhps in complex with substrates
94c5ixmH_



not modelled 7.9 8
PDB header:transport protein
Chain: H: PDB Molecule:lps-assembly lipoprotein lpte;
PDBTitle: the lps transporter lptde from yersinia pestis, core complex
95c2vu2D_



not modelled 7.9 21
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: biosynthetic thiolase from z. ramigera. complex with s-pantetheine-11-2 pivalate.
96d1tqyb2



not modelled 7.8 26
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
97c6et9D_



not modelled 7.7 25
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coa acetyltransferase thiolase;
PDBTitle: structure of the acetoacetyl-coa-thiolase/hmg-coa-synthase complex2 from methanothermococcus thermolithotrophicus at 2.75 a
98c1p6gE_



not modelled 7.5 18
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s5;
PDBTitle: real space refined coordinates of the 30s subunit fitted into the low2 resolution cryo-em map of the ef-g.gtp state of e. coli 70s ribosome
99c5svhB_



not modelled 7.5 43
PDB header:transcription
Chain: B: PDB Molecule:mll/c-myb chimera;
PDBTitle: crystal structure of the kix domain of cbp in complex with a mll/c-myb2 chimera

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