Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0380c_(-)_456269_456820
DateTue Jul 23 14:50:45 BST 2019
Unique Job ID232309bc984912ce
SequenceVLLRDGDARN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.394 Y:49.504 Z:51.255
Model (left) based on template c1gz0H_
Top template information
PDB header:transferase
Chain: H: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
Confidence and coverage
Confidence:100.0% Coverage: 95%
174 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1gz0H_
100.0 21
PDB header:transferase
Chain: H: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
2c1zjrA_
100.0 20
PDB header:transferase
Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase;
PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme
3d1v2xa_
100.0 25
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
4c3gyqB_
100.0 24
PDB header:transferase
Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase;
PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex
5c1ipaA_
100.0 20
PDB header:transferase
Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase;
PDBTitle: crystal structure of rna 2'-o ribose methyltransferase
6d1gz0a1
100.0 22
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
7c1gz0G_
100.0 22
PDB header:transferase
Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
8c5kzkA_
100.0 22
PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna methyltransferase, trmh family;
PDBTitle: crystal structure of rrna methyltransferase from sinorhizobium2 meliloti
9c2i6dA_
100.0 17
PDB header:transferase
Chain: A: PDB Molecule:rna methyltransferase, trmh family;
PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis.
10c1x7pB_
100.0 26
PDB header:transferase
Chain: B: PDB Molecule:rrna methyltransferase;
PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet
11c4x3mB_
100.0 19
PDB header:transferase
Chain: B: PDB Molecule:rna 2'-o ribose methyltransferase;
PDBTitle: crystal structure of ttha0275 from thermus thermophilus (hb8) in2 complex with adenosine in space group p212121
12c2ha8A_
100.0 22
PDB header:rna binding protein
Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein;
PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1
13d1ipaa1
100.0 21
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
14c5co4A_
100.0 30
PDB header:transferase
Chain: A: PDB Molecule:putative trna (cytidine(34)-2'-o)-methyltransferase;
PDBTitle: structural insights into the 2-oh methylation of c/u34 on trna
15c4pzkA_
100.0 18
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine(34)-2'-o)-methyltransferase;
PDBTitle: crystal strucrure of putative rna methyltransferase from bacillus2 anthracis.
16d1mxia_
100.0 19
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
17c3onpA_
100.0 20
PDB header:transferase
Chain: A: PDB Molecule:trna/rrna methyltransferase (spou);
PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides
18c5gm8A_
100.0 21
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: methylation at position 32 of trna catalyzed by trmj alters oxidative2 stress response in pseudomonas aeruiginosa
19c3e5yB_
100.0 18
PDB header:transferase
Chain: B: PDB Molecule:trmh family rna methyltransferase;
PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei
20c3ic6A_
100.0 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative methylase family protein;
PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae
21c4cndB_
not modelled 100.0 19
PDB header:transferase
Chain: B: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of e.coli trmj
22c4cngB_
not modelled 100.0 16
PDB header:transferase
Chain: B: PDB Molecule:spou rrna methylase;
PDBTitle: crystal structure of sulfolobus acidocaldarius trmj in2 complex with s-adenosyl-l-homocysteine
23c3l8uA_
not modelled 100.0 18
PDB header:transferase
Chain: A: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159
24c4xboA_
not modelled 100.0 18
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of full length e.coli trmj in complex with sah
25c3ilkB_
not modelled 100.0 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380;
PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20
26c5graA_
not modelled 100.0 17
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of trmj from z. mobilis zm4
27c3ktyA_
not modelled 100.0 17
PDB header:transferase
Chain: A: PDB Molecule:probable methyltransferase;
PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i
28c3dcmX_
not modelled 99.9 16
PDB header:transferase
Chain: X: PDB Molecule:uncharacterized protein tm_1570;
PDBTitle: crystal structure of the thermotoga maritima spout family rna-2 methyltransferase protein tm1570 in complex with s-adenosyl-l-3 methionine
29c6ahwB_
not modelled 99.8 22
PDB header:transferase
Chain: B: PDB Molecule:circular-permutated trna (cytidine(34)-2'-o)-
PDBTitle: crystal structure of circular-permutated yibk methyltransferase from2 haemophilus influenzae
30c2yy8B_
not modelled 97.5 13
PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
31d1vhka2
not modelled 97.1 14
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
32c1vhkA_
not modelled 96.9 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yqeu;
PDBTitle: crystal structure of an hypothetical protein
33d2o3aa1
not modelled 96.9 15
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF0751-like
34c3kw2A_
not modelled 96.4 13
PDB header:transferase
Chain: A: PDB Molecule:probable r-rna methyltransferase;
PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis
35c2egwB_
not modelled 96.1 11
PDB header:rna methyltransferase
Chain: B: PDB Molecule:upf0088 protein aq_165;
PDBTitle: crystal structure of rrna methyltransferase with sah ligand
36c4j3cB_
not modelled 95.4 15
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s ribosomal rna methyltransferase rsme
37c5o96F_
not modelled 95.2 12
PDB header:transferase
Chain: F: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: structure of the putative methyltransferase lpg2936 from legionella2 pneumophila in complex with the bound cofactor sam
38c1vhyB_
not modelled 95.0 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein hi0303;
PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558
39d1nxza2
not modelled 94.7 15
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
40c5vm8A_
not modelled 94.3 14
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of a ribosomal rna small subunit methyltransferase e2 from neisseria gonorrhoeae bound to s-adenosyl methionine
41c4l69A_
not modelled 94.2 17
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: rv2372c of mycobacterium tuberculosis is rsme like methyltransferse
42c4e8bA_
not modelled 94.1 15
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s rrna methyltransferase rsme from e.coli
43c3ai9X_
not modelled 93.9 12
PDB header:transferase
Chain: X: PDB Molecule:upf0217 protein mj1640;
PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase
44d1v6za2
not modelled 92.0 15
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
45c2cx8B_
not modelled 91.3 17
PDB header:transferase
Chain: B: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
46c2cx8A_
not modelled 90.6 15
PDB header:transferase
Chain: A: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
47d2qwva1
not modelled 86.0 10
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF1056-like
48d2qmma1
not modelled 72.9 21
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF1056-like
49c1z85B_
not modelled 72.7 11
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein tm1380;
PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution
50d1k3ra2
not modelled 66.0 24
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:Hypothetical protein MTH1 (MT0001), dimerisation domain
51c1k3rA_
not modelled 55.1 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein mt0001;
PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum
52c4rg1A_
not modelled 49.9 19
PDB header:transferase
Chain: A: PDB Molecule:c9orf114;
PDBTitle: methyltransferase domain of c9orf114
53d2c42a3
not modelled 40.7 16
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
54c2v3jA_
not modelled 40.4 15
PDB header:ribosomal protein
Chain: A: PDB Molecule:essential for mitotic growth 1;
PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase
55c2x3yA_
not modelled 31.9 16
PDB header:isomerase
Chain: A: PDB Molecule:phosphoheptose isomerase;
PDBTitle: crystal structure of gmha from burkholderia pseudomallei
56d2ivya1
not modelled 31.2 10
Fold:Ferredoxin-like
Superfamily:TTP0101/SSO1404-like
Family:TTP0101/SSO1404-like
57c3o7bA_
not modelled 28.1 12
PDB header:transferase
Chain: A: PDB Molecule:ribosome biogenesis nep1 rna methyltransferase;
PDBTitle: crystal structure of archaeoglobus fulgidus nep1 bound to s-2 adenosylhomocysteine
58d1a9xa3
not modelled 25.7 10
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
59d2f06a1
not modelled 25.3 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:BT0572-like
60c5ol2E_
not modelled 23.1 10
PDB header:flavoprotein
Chain: E: PDB Molecule:electron transfer flavoprotein small subunit;
PDBTitle: the electron transferring flavoprotein/butyryl-coa dehydrogenase2 complex from clostridium difficile
61c3lyhB_
not modelled 22.5 16
PDB header:lyase
Chain: B: PDB Molecule:cobalamin (vitamin b12) biosynthesis cbix protein;
PDBTitle: crystal structure of putative cobalamin (vitamin b12) biosynthesis2 cbix protein (yp_958415.1) from marinobacter aquaeolei vt8 at 1.60 a3 resolution
62c1z0eF_
not modelled 22.2 10
PDB header:hydrolase
Chain: F: PDB Molecule:putative protease la homolog type;
PDBTitle: crystal structure of a. fulgidus lon proteolytic domain
63c3excX_
not modelled 21.9 4
PDB header:hydrolase
Chain: X: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the rna'se sso8090 from sulfolobus solfataricus
64c4kpuB_
not modelled 21.4 18
PDB header:electron transport
Chain: B: PDB Molecule:electron transfer flavoprotein alpha/beta-subunit;
PDBTitle: electron transferring flavoprotein of acidaminococcus fermentans:2 towards a mechanism of flavin-based electron bifurcation
65d1o94c_
not modelled 19.7 12
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
66c2n9rA_
not modelled 18.3 45
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide padbs1r1;
PDBTitle: novel antimicrobial peptide padbs1r1 designed from the ribosomal2 protein l39e from pyrobaculum aerophilum using bioinformatics
67d1jvna2
not modelled 16.9 10
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
68c4lyaA_
not modelled 16.4 12
PDB header:cell cycle
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: essc (atpases 2 and 3) from geobacillus thermodenitrificans (semet)
69c2iswB_
not modelled 16.2 13
PDB header:lyase
Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase;
PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate
70c3j1rS_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: S: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
71c3j1rK_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: K: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
72c3j1rL_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: L: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
73c3j1rU_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: U: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
74c3j1rR_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: R: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
75c3j1rQ_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: Q: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
76c3j1rH_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: H: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
77c3j1rC_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: C: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
78c3j1rD_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: D: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
79c3j1rJ_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: J: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
80c3j1rA_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: A: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
81c3j1rO_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: O: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
82c3j1rT_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: T: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
83c3j1rN_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: N: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
84c3j1rE_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: E: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
85c3j1rI_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: I: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
86c3j1rB_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
87c3j1rF_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: F: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
88c3j1rP_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: P: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
89c3j1rG_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: G: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
90c3j1rM_
not modelled 14.3 31
PDB header:cell adhesion, structural protein
Chain: M: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
91c2y0fD_
not modelled 14.2 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
92d2v3ka1
not modelled 12.9 15
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:EMG1/NEP1-like
93d1u7za_
not modelled 12.8 14
Fold:Ribokinase-like
Superfamily:CoaB-like
Family:CoaB-like
94c5douC_
not modelled 12.2 12
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
95c4s1aB_
not modelled 12.0 12
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein cthe_0052 from2 ruminiclostridium thermocellum atcc 27405
96c6fahB_
not modelled 11.8 12
PDB header:flavoprotein
Chain: B: PDB Molecule:caffeyl-coa reductase-etf complex subunit card;
PDBTitle: molecular basis of the flavin-based electron-bifurcating caffeyl-coa2 reductase reaction
97c3lmaC_
not modelled 11.7 21
PDB header:membrane protein
Chain: C: PDB Molecule:stage v sporulation protein ad (spovad);
PDBTitle: crystal structure of the stage v sporulation protein ad (spovad) from2 bacillus licheniformis. northeast structural genomics consortium3 target bir6.
98d1ulza2
not modelled 11.2 16
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
99c3ajfA_
not modelled 10.9 15
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus

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Transmembrane helix prediction 

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