Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0381c_(-)_456916_457824
DateTue Jul 23 14:50:45 BST 2019
Unique Job IDa5bb6cec7239be27
SequenceVRILVAWATC ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.747 Y:39.849 Z:41.612
Model (left) based on template d3c0na2
Top template information
Fold:Aerolisin/ETX pore-forming domain
Superfamily:Aerolisin/ETX pore-forming domain
Family:(Pro)aerolysin, pore-forming lobe
Confidence and coverage
Confidence: 46.5% Coverage: 21%
63 residues ( 21% of your sequence) have been modelled with 46.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d3c0na2



46.5 25
Fold:Aerolisin/ETX pore-forming domain
Superfamily:Aerolisin/ETX pore-forming domain
Family:(Pro)aerolysin, pore-forming lobe
2c1urzC_



32.5 18
PDB header:virus/viral protein
Chain: C: PDB Molecule:envelope protein;
PDBTitle: low ph induced, membrane fusion conformation of the2 envelope protein of tick-borne encephalitis virus
3c4iaoB_



24.7 37
PDB header:hydrolase/transcription
Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2;
PDBTitle: crystal structure of sir2 c543s mutant in complex with sid domain of2 sir4
4d1ok8a2



14.8 20
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
5d1qcsa1



13.3 27
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
6d1svba2



11.7 21
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
7c5ireA_



11.5 22
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
8c6bi6A_



8.4 24
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yejg;
PDBTitle: solution nmr structure of uncharacterized protein yejg
9d1i40a_



7.3 29
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
10c4o4dA_



7.0 23
PDB header:transferase
Chain: A: PDB Molecule:inositol hexakisphosphate kinase;
PDBTitle: crystal structure of an inositol hexakisphosphate kinase ehip6ka in2 complexed with atp and ins(1,4,5)p3
11c2hjhB_



7.0 32
PDB header:hydrolase
Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2;
PDBTitle: crystal structure of the sir2 deacetylase
12d2erla_



7.0 86
Fold:Protozoan pheromone-like
Superfamily:Protozoan pheromone proteins
Family:Protozoan pheromone proteins
13d2cu9a1



6.8 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ASF1-like
Family:ASF1-like
14d1roca_



6.6 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ASF1-like
Family:ASF1-like
15c4drbC_



6.5 20
PDB header:dna binding protein/protein binding
Chain: C: PDB Molecule:fanconi anemia group m protein;
PDBTitle: the crystal structure of fancm bound mhf complex
16c3uajA_



6.5 21
PDB header:viral protein/immune system
Chain: A: PDB Molecule:envelope protein;
PDBTitle: crystal structure of the envelope glycoprotein ectodomain from dengue2 virus serotype 4 in complex with the fab fragment of the chimpanzee3 monoclonal antibody 5h2
17d2z1ca1



6.2 33
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
18c2idcA_



6.1 23
PDB header:replication/chaperone
Chain: A: PDB Molecule:anti-silencing protein 1 and histone h3 chimera;
PDBTitle: structure of the histone h3-asf1 chaperone interaction
19c3j21R_



5.9 36
PDB header:ribosome
Chain: R: PDB Molecule:50s ribosomal protein l21e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
20c5vqjA_



5.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:exo-beta-1,4-xylanase;
PDBTitle: discovery of a first gh11 exo-1,4-beta-xylanase from a diverse2 microbial sugar cane bagasse composting community
21c3lmaC_



not modelled 5.9 37
PDB header:membrane protein
Chain: C: PDB Molecule:stage v sporulation protein ad (spovad);
PDBTitle: crystal structure of the stage v sporulation protein ad (spovad) from2 bacillus licheniformis. northeast structural genomics consortium3 target bir6.
22d2ot2a1



not modelled 5.7 44
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
23c2i32A_



not modelled 5.7 27
PDB header:replication chaperone
Chain: A: PDB Molecule:anti-silencing factor 1 paralog a;
PDBTitle: structure of a human asf1a-hira complex and insights into specificity2 of histone chaperone complex assembly
24d2i32a1



not modelled 5.7 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ASF1-like
Family:ASF1-like
25d1vmba_



not modelled 5.6 25
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
26c1vmbA_



not modelled 5.6 25
PDB header:translation
Chain: A: PDB Molecule:30s ribosomal protein s6;
PDBTitle: crystal structure of 30s ribosomal protein s6 (tm0603) from thermotoga2 maritima at 1.70 a resolution
27d1loua_



not modelled 5.6 13
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
28c3ld3A_



not modelled 5.4 33
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic phosphatase from anaplasma2 phagocytophilum at 1.75a resolution
29d1pz8a_



not modelled 5.4 38
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Laminin G-like module
30d1j8fa_



not modelled 5.3 22
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
31d1v3ea_



not modelled 5.2 18
Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
32c4bg7A_



not modelled 5.2 39
PDB header:replication
Chain: A: PDB Molecule:putative transcriptional coactivator p15;
PDBTitle: bacteriophage t5 homolog of the eukaryotic transcription coactivator2 pc4 implicated in recombination-dependent dna replication
33d3d3ra1



not modelled 5.1 67
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite