Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0383c_(-)_458462_459316
DateTue Jul 23 14:50:45 BST 2019
Unique Job IDd57eed2c39ad804c
SequenceMVPLWFTLSA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:109.203 Y:32.210 Z:21.854
Model (left) based on template c2miiA_
Top template information
PDB header:protein binding
Chain: A: PDB Molecule:penicillin-binding protein activator lpob;
PDBTitle: nmr structure of e. coli lpob
Confidence and coverage
Confidence: 93.4% Coverage: 18%
50 residues ( 18% of your sequence) have been modelled with 93.4% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2miiA_
93.4 18
PDB header:protein binding
Chain: A: PDB Molecule:penicillin-binding protein activator lpob;
PDBTitle: nmr structure of e. coli lpob
2d1muwa_
47.5 15
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
3c5buvC_
46.5 14
PDB header:isomerase
Chain: C: PDB Molecule:putative epimerase;
PDBTitle: x-ray structure of wbca from yersinia enterocolitica
4c6c46E_
45.2 21
PDB header:isomerase
Chain: E: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase;
PDBTitle: crystal structure of dtdp-4-dehydrorhamnose 3,5-epimerase from2 elizabethkingia anophelis nuhp1
5d1xlma_
44.5 18
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
6d1dzra_
43.9 16
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:dTDP-sugar isomerase
7d1m0da_
43.9 20
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Endonuclease I (Holliday junction resolvase)
8d1e7la1
43.2 19
Fold:LEM/SAP HeH motif
Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains
Family:Recombination endonuclease VII, C-terminal and dimerization domains
9d1wlta1
41.1 19
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:dTDP-sugar isomerase
10c3rykB_
39.2 23
PDB header:isomerase
Chain: B: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase;
PDBTitle: 1.63 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 3,5-epimerase (rfbc) from bacillus anthracis str. ames with tdp and3 ppi bound
11d2ixca1
38.3 26
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:dTDP-sugar isomerase
12d2c0za1
37.5 26
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:dTDP-sugar isomerase
13c1upiA_
36.6 26
PDB header:epimerase
Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase;
PDBTitle: mycobacterium tuberculosis rmlc epimerase (rv3465)
14c4hmzD_
36.2 28
PDB header:unknown function
Chain: D: PDB Molecule:putative 3-epimerase in d-allose pathway;
PDBTitle: crystal structure of chmj, a 3'-monoepimerase from streptomyces2 bikiniensis in complex with dtdp-quinovose
15c2c0zA_
36.1 26
PDB header:isomerase
Chain: A: PDB Molecule:novw;
PDBTitle: the 1.6 a resolution crystal structure of novw: a 4-keto-6-2 deoxy sugar epimerase from the novobiocin biosynthetic3 gene cluster of streptomyces spheroides
16d1oi6a_
33.7 25
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:dTDP-sugar isomerase
17c4nl6C_
32.4 18
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
18c4k3zA_
31.0 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-erythrulose 4-phosphate dehydrogenase;
PDBTitle: crystal structure of d-erythrulose 4-phosphate dehydrogenase from2 brucella melitensis, solved by iodide sad
19d1bxca_
27.5 10
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
20c6ndrA_
26.9 18
PDB header:sugar binding protein
Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase;
PDBTitle: crystal structure of dtdp-6-deoxy-d-glucose-3,5-epimerase rmlc from2 legionella pneumophila philadelphia 1 in complex with dtdp-4-keto-l-3 rhamnose
21c3g9hA_
not modelled 25.5 15
PDB header:endocytosis
Chain: A: PDB Molecule:suppressor of yeast profilin deletion;
PDBTitle: crystal structure of the c-terminal mu homology domain of2 syp1
22d1qt1a_
not modelled 24.3 15
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
23c2kngA_
not modelled 22.5 33
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: solution structure of c-domain of lsr2
24d2glka1
not modelled 21.4 15
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
25c4xtnJ_
not modelled 21.4 12
PDB header:membrane protein
Chain: J: PDB Molecule:sodium pumping rhodopsin;
PDBTitle: crystal structure of the light-driven sodium pump kr2 in the2 pentameric red form, ph 4.9
26c2yopB_
not modelled 21.0 16
PDB header:apoptosis
Chain: B: PDB Molecule:protein fam3b;
PDBTitle: long wavelength s-sad structure of fam3b pander
27c3d3rA_
not modelled 19.2 13
PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
28d2ixha1
not modelled 18.8 21
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:dTDP-sugar isomerase
29c2jagA_
not modelled 18.6 13
PDB header:membrane protein
Chain: A: PDB Molecule:halorhodopsin;
PDBTitle: l1-intermediate of halorhodopsin t203v
30d2z1ca1
not modelled 18.0 13
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
31d1qzza2
not modelled 17.9 11
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
32d1e12a_
not modelled 17.7 13
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
33d1uaza_
not modelled 17.4 10
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
34d3d3ra1
not modelled 17.4 13
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
35d1xioa_
not modelled 16.6 9
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
36c1xioA_
not modelled 16.6 9
PDB header:signaling protein
Chain: A: PDB Molecule:anabaena sensory rhodopsin;
PDBTitle: anabaena sensory rhodopsin
37c5gzxD_
not modelled 16.4 18
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
38c5azdA_
not modelled 16.1 24
PDB header:transport protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of thermophilic rhodopsin.
39c6eyuA_
not modelled 15.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of the inward h(+) pump xenorhodopsin
40c3re2A_
not modelled 15.1 19
PDB header:unknown function
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of menin reveals the binding site for mixed lineage2 leukemia (mll) protein
41d1h2sa_
not modelled 14.7 18
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
42c3a7kD_
not modelled 14.7 15
PDB header:membrane protein
Chain: D: PDB Molecule:halorhodopsin;
PDBTitle: crystal structure of halorhodopsin from natronomonas2 pharaonis
43d1xima_
not modelled 14.7 11
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
44c2x7lP_
not modelled 14.6 33
PDB header:immune system
Chain: P: PDB Molecule:protein rev;
PDBTitle: implications of the hiv-1 rev dimer structure at 3.2a resolution for2 multimeric binding to the rev response element
45c2kncB_
not modelled 14.2 11
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
46c3ddlB_
not modelled 13.9 25
PDB header:transport protein
Chain: B: PDB Molecule:xanthorhodopsin;
PDBTitle: crystallographic structure of xanthorhodopsin, a light-driven ion pump2 with dual chromophore
47c3u88B_
not modelled 13.6 32
PDB header:transcription
Chain: B: PDB Molecule:menin;
PDBTitle: crystal structure of human menin in complex with mll1 and ledgf
48c3mk7F_
not modelled 13.1 23
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
49c4jr8A_
not modelled 12.9 12
PDB header:proton transport
Chain: A: PDB Molecule:cruxrhodopsin-3;
PDBTitle: crystal structure of cruxrhodopsin-3 from haloarcula vallismortis at2 2.3 angstrom resolution
50c2ghjD_
not modelled 12.7 32
PDB header:structural protein
Chain: D: PDB Molecule:50s ribosomal protein l20;
PDBTitle: crystal structure of folded and partially unfolded forms of aquifex2 aeolicus ribosomal protein l20
51c3ug9A_
not modelled 12.4 8
PDB header:membrane protein
Chain: A: PDB Molecule:archaeal-type opsin 1, archaeal-type opsin 2;
PDBTitle: crystal structure of the closed state of channelrhodopsin
52c4fbzA_
not modelled 12.4 9
PDB header:membrane protein
Chain: A: PDB Molecule:deltarhodopsin;
PDBTitle: crystal structure of deltarhodopsin from haloterrigena thermotolerans
53d2ot2a1
not modelled 12.0 20
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
54d1ep0a_
not modelled 12.0 20
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:dTDP-sugar isomerase
55d1gz0a2
not modelled 11.8 14
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:RNA 2'-O ribose methyltransferase substrate binding domain
56c2n1pA_
not modelled 11.7 30
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 5b, ns5b;
PDBTitle: structure of the c-terminal membrane domain of hcv ns5b protein
57c4qidB_
not modelled 11.6 12
PDB header:membrane protein
Chain: B: PDB Molecule:bacteriorhodopsin-i;
PDBTitle: crystal structure of haloquadratum walsbyi bacteriorhodopsin
58d1tw3a2
not modelled 11.4 9
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
59c3kdpG_
not modelled 11.2 21
PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
60c3kdpH_
not modelled 11.2 21
PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
61c3lphD_
not modelled 11.2 33
PDB header:viral protein
Chain: D: PDB Molecule:protein rev;
PDBTitle: crystal structure of the hiv-1 rev dimer
62d1z01a1
not modelled 11.1 16
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
63d1bxba_
not modelled 10.9 10
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
64c3bjxB_
not modelled 10.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi;
PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3
65c4gq6A_
not modelled 10.2 32
PDB header:transcription/transcription inhibitor
Chain: A: PDB Molecule:menin;
PDBTitle: human menin in complex with mll peptide
66c2mkvA_
not modelled 10.1 24
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
67d1ygya4
not modelled 10.1 19
Fold:FwdE/GAPDH domain-like
Superfamily:Serine metabolism enzymes domain
Family:SerA intervening domain-like
68c1rfoC_
not modelled 10.0 33
PDB header:viral protein
Chain: C: PDB Molecule:whisker antigen control protein;
PDBTitle: trimeric foldon of the t4 phagehead fibritin
69c6hwhB_
not modelled 9.9 22
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
70c5xtdo_
not modelled 9.8 10
PDB header:oxidoreductase/electron transport
Chain: O: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 2,
PDBTitle: cryo-em structure of human respiratory complex i
71c2kvoA_
not modelled 9.7 13
PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein;
PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171
72c2l82A_
not modelled 9.5 13
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein or32;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32
73c5ggoB_
not modelled 9.4 18
PDB header:sugar binding protein
Chain: B: PDB Molecule:protein o-linked-mannose beta-1,2-n-
PDBTitle: crystal structure of n-terminal domain of human protein o-mannose2 beta-1,2-n-acetylglucosaminyltransferase in complex with galnac-3 beta1,3-glcnac-beta-pnp
74c5zihA_
not modelled 9.3 7
PDB header:membrane protein
Chain: A: PDB Molecule:sensory opsin a,chrimson;
PDBTitle: crystal structure of the red light-activated channelrhodopsin2 chrimson.
75c3qxbB_
not modelled 9.0 6
PDB header:isomerase
Chain: B: PDB Molecule:putative xylose isomerase;
PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution
76c4v19U_
not modelled 8.7 25
PDB header:ribosome
Chain: U: PDB Molecule:mitoribosomal protein bl20m, mrpl20;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
77d2nn6c2
not modelled 8.4 16
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
78c5o60R_
not modelled 8.4 39
PDB header:ribosome
Chain: R: PDB Molecule:50s ribosomal protein l20;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
79d2zjrn1
not modelled 8.3 39
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
80d1c4ka2
not modelled 8.3 24
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Ornithine decarboxylase major domain
81c4hyjB_
not modelled 8.3 6
PDB header:proton transport
Chain: B: PDB Molecule:rhodopsin;
PDBTitle: crystal structure of exiguobacterium sibiricum rhodopsin
82c5mlc4_
not modelled 8.2 65
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l34, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
83c6csmC_
not modelled 8.0 18
PDB header:membrane protein
Chain: C: PDB Molecule:gtacr1;
PDBTitle: crystal structure of the natural light-gated anion channel gtacr1
84c5mc9C_
not modelled 7.9 19
PDB header:cell adhesion
Chain: C: PDB Molecule:laminin subunit gamma-1;
PDBTitle: crystal structure of the heterotrimeric integrin-binding region of2 laminin-111
85c3j3wQ_
not modelled 7.9 39
PDB header:ribosome
Chain: Q: PDB Molecule:50s ribosomal protein l20;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
86c3wt9A_
not modelled 7.7 5
PDB header:proton transport
Chain: A: PDB Molecule:rhodopsin i;
PDBTitle: crystal structure of the cell-free synthesized membrane protein,2 acetabularia rhodopsin i, at 1.48 angstrom
87d2j01u1
not modelled 7.5 32
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
88c4hqjG_
not modelled 7.5 25
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
89c3am6C_
not modelled 7.3 10
PDB header:transport protein
Chain: C: PDB Molecule:rhodopsin-2;
PDBTitle: crystal structure of the proton pumping rhodopsin ar2 from marine alga2 acetabularia acetabulum
90c6q8iK_
not modelled 7.2 27
PDB header:splicing
Chain: K: PDB Molecule:protein red;
PDBTitle: nterminal domain of human smu1 in complex with human redmid
91d2gtaa1
not modelled 6.9 9
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
92d2iuba2
not modelled 6.8 8
Fold:Transmembrane helix hairpin
Superfamily:Magnesium transport protein CorA, transmembrane region
Family:Magnesium transport protein CorA, transmembrane region
93c2e1cA_
not modelled 6.8 8
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
94d1eb7a2
not modelled 6.7 14
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
95c4hqjE_
not modelled 6.6 25
PDB header:hydrolase/transport protein
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
96c4eb5B_
not modelled 6.5 19
PDB header:transferase/metal binding protein
Chain: B: PDB Molecule:probable cysteine desulfurase 2;
PDBTitle: a. fulgidus iscs-iscu complex structure
97c3a24A_
not modelled 6.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of bt1871 retaining glycosidase
98c2ostC_
not modelled 6.3 19
PDB header:hydrolase/dna
Chain: C: PDB Molecule:putative endonuclease;
PDBTitle: the structure of a bacterial homing endonuclease : i-ssp6803i
99c3d0fA_
not modelled 6.3 20
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca;
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718

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Transmembrane helix prediction 

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