Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0387c_(-)_466673_468004
DateTue Jul 23 14:50:46 BST 2019
Unique Job IDeaa19b8362c14a5d
SequenceMDFGALPPEI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.074 Y:72.050 Z:70.739
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 39%
173 residues ( 39% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 60% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 61
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2d2g38b1
100.0 36
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
3c2g38B_
100.0 36
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
4c4xy3A_
100.0 19
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
98.6 21
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
97.9 9
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c4iogD_
97.8 14
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
8c3gvmA_
97.7 15
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
9c3zbhC_
97.6 15
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
97.0 20
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsB_
96.2 13
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12c4lwsA_
96.1 17
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
13d1wa8b1
95.9 15
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
14c4i0xA_
94.7 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
91.0 14
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16c4i0xJ_
85.9 23
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
17d1ui5a2
25.0 20
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
18c1bkvA_
12.3 50
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
19c5frgA_
11.9 75
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
20c1bkvB_
11.7 50
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
21c1bkvC_
not modelled 11.7 50
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
22c2iu1A_
not modelled 8.7 22
PDB header:transcription
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of eif5 c-terminal domain
23c2fulE_
not modelled 7.9 22
PDB header:translation
Chain: E: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of the c-terminal domain of s. cerevisiae eif5
24c1vytF_
not modelled 7.8 25
PDB header:transport protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel
PDBTitle: beta3 subunit complexed with aid
25c4xb6D_
not modelled 7.6 33
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
26c3sjrB_
not modelled 6.9 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved unkown function protein cv_1783 from2 chromobacterium violaceum atcc 12472
27c3zfsA_
not modelled 6.3 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:f420-reducing hydrogenase, subunit alpha;
PDBTitle: cryo-em structure of the f420-reducing nife-hydrogenase from a2 methanogenic archaeon with bound substrate
28c1bzgA_
not modelled 6.1 0
PDB header:hormone
Chain: A: PDB Molecule:parathyroid hormone-related protein;
PDBTitle: the solution structure of human parathyroid hormone-related2 protein (1-34) in near-physiological solution, nmr, 303 structures
29c6aokA_
not modelled 6.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:ceg4;
PDBTitle: crystal structure of legionella pneumophila effector ceg4 with n-2 terminal tev protease cleavage sequence
30c2nvjA_
not modelled 5.8 40
PDB header:hydrolase
Chain: A: PDB Molecule:25mer peptide from vacuolar atp synthase subunit
PDBTitle: nmr structures of transmembrane segment from subunit a from2 the yeast proton v-atpase
31d1vlfn1
not modelled 5.7 80
Fold:Prealbumin-like
Superfamily:Cna protein B-type domain
Family:Cna protein B-type domain
32c2ke4A_
not modelled 5.6 75
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
33c6cgjA_
not modelled 5.5 33
PDB header:hydrolase
Chain: A: PDB Molecule:effector protein lem4 (lpg1101);
PDBTitle: structure of the had domain of effector protein lem4 (lpg1101) from2 legionella pneumophila
34c5l85B_
not modelled 5.5 36
PDB header:signaling protein
Chain: B: PDB Molecule:nuclear fragile x mental retardation-interacting protein 1;
PDBTitle: solution structure of the complex between human znhit3 and nufip12 proteins
35c2lkqA_
not modelled 5.5 44
PDB header:immune system
Chain: A: PDB Molecule:immunoglobulin lambda-like polypeptide 1;
PDBTitle: nmr structure of the lambda 5 22-45 peptide
36c6et5m_
not modelled 5.4 31
PDB header:photosynthesis
Chain: M: PDB Molecule:reaction center protein m chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
37c6et55_
not modelled 5.4 31
PDB header:photosynthesis
Chain: 5: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
38c6et5y_
not modelled 5.4 31
PDB header:photosynthesis
Chain: Y: PDB Molecule:light-harvesting protein b-1015 alpha chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
39c6et5I_
not modelled 5.4 31
PDB header:photosynthesis
Chain: I: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
40c6et5O_
not modelled 5.4 31
PDB header:photosynthesis
Chain: O: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
41c6et5g_
not modelled 5.4 31
PDB header:photosynthesis
Chain: G: PDB Molecule:light-harvesting protein b-1015 beta chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
42c6et5R_
not modelled 5.4 31
PDB header:photosynthesis
Chain: R: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
43c6et5p_
not modelled 5.4 31
PDB header:photosynthesis
Chain: P: PDB Molecule:light-harvesting protein b-1015 alpha chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
44c6et52_
not modelled 5.4 31
PDB header:photosynthesis
Chain: 2: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
45c6et5d_
not modelled 5.4 31
PDB header:photosynthesis
Chain: D: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
46c6et5X_
not modelled 5.4 31
PDB header:photosynthesis
Chain: X: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
47c6et5v_
not modelled 5.4 31
PDB header:photosynthesis
Chain: V: PDB Molecule:light-harvesting protein b-1015 alpha chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
48c6et5s_
not modelled 5.4 31
PDB header:photosynthesis
Chain: S: PDB Molecule:light-harvesting protein b-1015 alpha chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
49c6et5U_
not modelled 5.4 31
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
50c6et5a_
not modelled 5.4 31
PDB header:photosynthesis
Chain: A: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
51c6et5j_
not modelled 5.4 31
PDB header:photosynthesis
Chain: J: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
52c1vytE_
not modelled 5.4 25
PDB header:transport protein
Chain: E: PDB Molecule:voltage-dependent l-type calcium channel
PDBTitle: beta3 subunit complexed with aid
53c3trhI_
not modelled 5.2 14
PDB header:lyase
Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase
PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
54c4dexB_
not modelled 5.2 25
PDB header:transport protein
Chain: B: PDB Molecule:voltage-dependent n-type calcium channel subunit alpha-1b;
PDBTitle: crystal structure of the voltage dependent calcium channel beta-22 subunit in complex with the cav2.2 i-ii linker.
55c4mveB_
not modelled 5.2 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of tcur_1030 protein from thermomonospora curvata

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below