Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0393_(-)_472784_474109
DateTue Jul 23 14:50:46 BST 2019
Unique Job ID9de3509d5220c61b
SequenceMAVGRCAIPR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.585 Y:29.643 Z:32.638
Model (left) based on template c2qgpA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
Confidence and coverage
Confidence: 98.9% Coverage: 15%
65 residues ( 15% of your sequence) have been modelled with 98.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qgpA_



98.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
2c5mkwA_



98.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:dna annealing helicase and endonuclease zranb3;
PDBTitle: crystal structure of the human zranb3 hnh domain
3c6ghcA_



98.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:5-methylcytosine-specific restriction enzyme a;
PDBTitle: modification dependent ecokmcra restriction endonuclease
4c5x1hS_



98.3 18
PDB header:protein transport
Chain: S: PDB Molecule:icmj (dotn);
PDBTitle: structure of legionella pneumophila dotn
5c5h0mA_



97.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: crystal structure of deep-sea thermophilic bacteriophage gve2 hnh2 endonuclease with zinc ion
6c5vgbA_



97.3 7
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of nmecas9 hnh domain bound to anti-crispr acriic1
7c5zmmD_



97.1 27
PDB header:dna binding protein
Chain: D: PDB Molecule:uncharacterized protein mcra;
PDBTitle: structure of the type iv phosphorothioation-dependent restriction2 endonuclease scomcra
8c4ogeA_



96.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease domain protein;
PDBTitle: crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
9c5axwA_



95.3 7
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
10c6ghsA_



86.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:tagi restriction endonuclease;
PDBTitle: modification dependent tagi restriction endonuclease
11d2ho2a1



69.2 36
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
12d2gykb1



66.4 18
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
13d2jb0b1



62.7 23
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
14c3vufA_



60.7 18
PDB header:transferase
Chain: A: PDB Molecule:granule-bound starch synthase 1,
PDBTitle: crystal structure of rice granule bound starch synthase i catalytic2 domain in complex with adp
15c2x6rA_



59.4 16
PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose
16c4rieB_



58.3 26
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase homolog;
PDBTitle: landomycin glycosyltransferase langt2
17d2ysca1



58.0 36
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
18c2xmpB_



48.4 17
PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp
19d2e45a1



43.9 38
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
20d3c7bb3



37.0 19
Fold:Nitrite and sulphite reductase 4Fe-4S domain-like
Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like
Family:Nitrite and sulphite reductase 4Fe-4S domain-like
21c4cmqB_



not modelled 33.8 9
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endonuclease cas9/csn1;
PDBTitle: crystal structure of mn-bound s.pyogenes cas9
22c3plwA_



not modelled 33.6 34
PDB header:hydrolase
Chain: A: PDB Molecule:recombination enhancement function protein;
PDBTitle: ref protein from p1 bacteriophage
23c3tsaA_



not modelled 32.4 25
PDB header:transferase
Chain: A: PDB Molecule:ndp-rhamnosyltransferase;
PDBTitle: spinosyn rhamnosyltransferase spng
24c4ambB_



not modelled 30.6 14
PDB header:transferase
Chain: B: PDB Molecule:snogd;
PDBTitle: crystal structure of the glycosyltransferase snogd from streptomyces2 nogalater
25c4by2C_



not modelled 30.1 25
PDB header:structural protein
Chain: C: PDB Molecule:anastral spindle 2, sas 4;
PDBTitle: sas-4 (dcpap) tcp domain in complex with a proline rich motif of ana22 (dstil) of drosophila melanogaster
26c4ld3A_



not modelled 29.9 20
PDB header:structural protein, protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structural analysis of the microcephaly protein cpap g-box domain2 suggests a role in centriole elongation.
27c4uhpA_



not modelled 28.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
28c4qkoH_



not modelled 27.4 30
PDB header:antimicrobial protein
Chain: H: PDB Molecule:pyocin-s2;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
29c7ceiB_



not modelled 26.5 22
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
30d2dlka1



not modelled 25.5 63
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
31c4bxrB_



not modelled 24.6 19
PDB header:cell cycle
Chain: B: PDB Molecule:cpap;
PDBTitle: structure of the wild-type tcp10 domain of danio rerio cpap in complex2 with a peptide of danio rerio stil
32c5ew5C_



not modelled 24.5 19
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
33c4bfcA_



not modelled 21.2 26
PDB header:transferase
Chain: A: PDB Molecule:3-deoxy-d-manno-octulosonic-acid transferase;
PDBTitle: crystal structure of the c-terminal cmp-kdo binding domain of waaa2 from acinetobacter baumannii
34c5yixB_



not modelled 20.9 23
PDB header:dna binding protein
Chain: B: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra sigma-interacting domain (sid) in complex2 with domain 2 of sigma 70
35d1w6ga1



not modelled 20.1 28
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
36c1vw4V_



not modelled 19.2 56
PDB header:ribosome
Chain: V: PDB Molecule:54s ribosomal protein l36, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
37c3u4gA_



not modelled 18.9 31
PDB header:transferase
Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase;
PDBTitle: the structure of cobt from pyrococcus horikoshii
38c6gnfC_



not modelled 17.3 7
PDB header:transferase
Chain: C: PDB Molecule:glycogen synthase;
PDBTitle: granule bound starch synthase from cyanobacterium sp. clg1 bound to2 acarbose and adp
39c5jhfA_



not modelled 16.7 29
PDB header:protein transport
Chain: A: PDB Molecule:klth0d11660p;
PDBTitle: crystal structure of atg13(17br)-atg13(17lr)-atg17-atg29-atg31 complex
40c1va1A_



not modelled 16.6 38
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1)
41c5xvmB_



not modelled 16.6 17
PDB header:transferase
Chain: B: PDB Molecule:sterol 3-beta-glucosyltransferase;
PDBTitle: sterol 3-beta-glucosyltransferase (ugt51) from saccharomyces2 cerevisiae (strain atcc 204508 / s288c)
42c2p6pB_



not modelled 16.2 26
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
43c3wadA_



not modelled 15.9 28
PDB header:transferase
Chain: A: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of glycosyltransferase vinc involved in the2 biosynthesis of vicenistatin
44d2isya2



not modelled 15.8 25
Fold:Iron-dependent repressor protein, dimerization domain
Superfamily:Iron-dependent repressor protein, dimerization domain
Family:Iron-dependent repressor protein, dimerization domain
45d1w2za1



not modelled 15.5 25
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
46d1a1ia1



not modelled 15.4 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
47c2b8tA_



not modelled 15.1 18
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: crystal structure of thymidine kinase from u.urealyticum in complex2 with thymidine
48c5w8sA_



not modelled 14.6 24
PDB header:transferase
Chain: A: PDB Molecule:lipid-a-disaccharide synthase;
PDBTitle: lipid a disaccharide synthase (lpxb)-7 solubilizing mutations
49c5v0tB_



not modelled 14.5 17
PDB header:transferase
Chain: B: PDB Molecule:alpha,alpha-trehalose-phosphate synthase (udp-forming);
PDBTitle: crystal structure of an alpha,alpha-trehalose-phosphate synthase (udp-2 forming) from burkholderia xenovorans in complex with glucose-6-3 phosphate
50c3d0qB_



not modelled 14.2 22
PDB header:transferase
Chain: B: PDB Molecule:protein calg3;
PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222
51d2glia4



not modelled 13.9 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
52c5g2xC_



not modelled 13.8 19
PDB header:transferase
Chain: C: PDB Molecule:group ii intron-encoded protein ltra;
PDBTitle: structure a of group ii intron complexed with its reverse2 transcriptase
53d1zfda_



not modelled 13.7 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
54c2pncB_



not modelled 13.4 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase, liver isozyme;
PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine
55d2b8ta2



not modelled 13.2 21
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
56d1ncsa_



not modelled 12.9 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
57c3iaaB_



not modelled 12.9 31
PDB header:transferase
Chain: B: PDB Molecule:calg2;
PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form
58d2oqea1



not modelled 12.5 25
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
59c1pxeA_



not modelled 12.0 55
PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1
60d1d6za1



not modelled 11.7 25
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
61c2f2jA_



not modelled 11.3 40
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1
62c5du2B_



not modelled 11.0 23
PDB header:transferase
Chain: B: PDB Molecule:espg2 glycosyltransferase;
PDBTitle: structural analysis of espg2 glycosyltransferase
63d1a1ha1



not modelled 10.9 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
64c2iyaB_



not modelled 10.9 19
PDB header:transferase
Chain: B: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a blueprint2 for antibiotic engineering
65d1a1ga1



not modelled 10.8 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
66d1bhia_



not modelled 10.8 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
67c1ui7A_



not modelled 10.6 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylethylamine oxidase;
PDBTitle: site-directed mutagenesis of his433 involved in binding of2 copper ion in arthrobacter globiformis amine oxidase
68c4hlnA_



not modelled 10.5 6
PDB header:transferase
Chain: A: PDB Molecule:starch synthase i;
PDBTitle: structure of barley starch synthase i in complex with2 maltooligosaccharide
69c3loyB_



not modelled 10.3 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of a copper-containing benzylamine oxidase from2 hansenula polymorpha
70c2iyfA_



not modelled 10.3 19
PDB header:transferase
Chain: A: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
71c4leiB_



not modelled 10.2 22
PDB header:transferase
Chain: B: PDB Molecule:ndp-forosamyltransferase;
PDBTitle: spinosyn forosaminyltransferase spnp
72d1rzua_



not modelled 10.1 27
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
73d1ejga_



not modelled 10.1 44
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
74c3ia7A_



not modelled 10.0 36
PDB header:transferase
Chain: A: PDB Molecule:calg4;
PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase
75d1jmna_



not modelled 9.9 40
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
76c2c10D_



not modelled 9.9 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:membrane copper amine oxidase;
PDBTitle: the structure of a truncated, soluble version of semicarbazide-2 sensitive amine oxidase
77d1u86a1



not modelled 9.8 63
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
78c3higB_



not modelled 9.7 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:amiloride-sensitive amine oxidase;
PDBTitle: crystal structure of human diamine oxidase in complex with the2 inhibitor berenil
79c1ekmC_



not modelled 9.7 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure at 2.5 a resolution of zinc-substituted2 copper amine oxidase of hansenula polymorpha expressed in3 escherichia coli
80c1d6uB_



not modelled 9.7 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of e. coli amine oxidase anaerobically reduced with2 beta-phenylethylamine
81c1orxA_



not modelled 9.6 40
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
82c3t5tA_



not modelled 9.4 22
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase;
PDBTitle: vall from streptomyces hygroscopicus in apo form
83c3dzcA_



not modelled 9.4 20
PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.
84c4ttnA_



not modelled 9.3 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
85c2mn1A_



not modelled 9.2 38
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
86d1tf3a2



not modelled 9.2 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
87c4ttoA_



not modelled 9.2 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
88d2iw1a1



not modelled 9.2 17
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
89c1nbwA_



not modelled 9.2 22
PDB header:hydrolase
Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit;
PDBTitle: glycerol dehydratase reactivase
90c4ttmA_



not modelled 9.2 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
91c2khbA_



not modelled 9.0 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
92c3othB_



not modelled 8.7 33
PDB header:transferase/antibiotic
Chain: B: PDB Molecule:calg1;
PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form
93c3s29C_



not modelled 8.5 19
PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.
94c3nbbC_



not modelled 8.4 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxisomal primary amine oxidase;
PDBTitle: crystal structure of mutant y305f expressed in e. coli in the copper2 amine oxidase from hansenula polymorpha
95c2ol5B_



not modelled 8.4 12
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
96d1ubdc3



not modelled 8.3 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
97c6fj3A_



not modelled 7.8 32
PDB header:membrane protein
Chain: A: PDB Molecule:parathyroid hormone/parathyroid hormone-related peptide
PDBTitle: high resolution crystal structure of parathyroid hormone 1 receptor in2 complex with a peptide agonist.
98d1aaya1



not modelled 7.7 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
99c2kukA_



not modelled 7.7 31
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2

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