Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0394c_(-)_474125_474844
DateTue Jul 23 14:50:46 BST 2019
Unique Job ID7c1f5a14da9dd792
SequenceMTEPRPVFAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:15.950 Y:27.398 Z:22.442
Model (left) based on template c3x0uB_
Top template information
PDB header:toxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pirb
Confidence and coverage
Confidence: 65.4% Coverage: 13%
31 residues ( 13% of your sequence) have been modelled with 65.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3x0uB_



65.4 39
PDB header:toxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pirb
2d1jhfa1



30.3 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
3c2e11B_



28.7 27
PDB header:hydrolase
Chain: B: PDB Molecule:hydrolase;
PDBTitle: the crystal structure of xc1258 from xanthomonas campestris: a cn-2 hydrolase superfamily protein with an arsenic adduct in the active3 site
4c5zhhB_



22.5 35
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: structure of inositol monophosphatase from anabaena (nostoc) sp. pcc2 7120
5c3a5iB_



19.2 25
PDB header:protein transport
Chain: B: PDB Molecule:flagellar biosynthesis protein flha;
PDBTitle: structure of the cytoplasmic domain of flha
6c5z2wB_



16.5 56
PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein ftsb;
PDBTitle: crystal structure of the bacterial cell division protein ftsq and ftsb
7d1jlia_



15.7 29
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
8c6ohzA_



15.2 24
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of an uncharacterized protein from leptospira borgpetersenii2 serovar hardjo-bovis (strain jb197)
9c4k05B_



15.2 38
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical exported protein;
PDBTitle: crystal structure of a duf1343 family protein (bf0371) from2 bacteroides fragilis nctc 9343 at 1.65 a resolution
10c4jjaA_



13.5 47
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1343 family protein (bf0379) from2 bacteroides fragilis nctc 9343 at 1.30 a resolution
11c5j84A_



13.0 27
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
12c5fb5B_



12.1 28
PDB header:viral protein
Chain: B: PDB Molecule:distal tube protein;
PDBTitle: crystal structure of the bacteriophage phi29 tail knob protein gp9
13d1mabg_



11.5 29
Fold:Pyruvate kinase C-terminal domain-like
Superfamily:ATP synthase (F1-ATPase), gamma subunit
Family:ATP synthase (F1-ATPase), gamma subunit
14c3cjeA_



10.5 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:osmc-like protein;
PDBTitle: crystal structure of an osmc-like hydroperoxide resistance protein2 (jann_2040) from jannaschia sp. ccs1 at 1.70 a resolution
15d1seda_



9.3 38
Fold:Hypothetical protein YhaI
Superfamily:Hypothetical protein YhaI
Family:Hypothetical protein YhaI
16d1jbja2



8.9 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
17c2dxbR_



8.7 19
PDB header:hydrolase
Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma;
PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers
18c3mixA_



8.4 16
PDB header:protein transport
Chain: A: PDB Molecule:flagellar biosynthesis protein flha;
PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha
19c6omzA_



8.3 21
PDB header:ligase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of dihydropteroate synthase from mycobacterium2 smegmatis with bound 6-hydroxymethylpterin-monophosphate
20d1ppjc2



8.2 45
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
21c5zmmD_



not modelled 8.2 34
PDB header:dna binding protein
Chain: D: PDB Molecule:uncharacterized protein mcra;
PDBTitle: structure of the type iv phosphorothioation-dependent restriction2 endonuclease scomcra
22c3o4zD_



not modelled 8.1 14
PDB header:protein binding
Chain: D: PDB Molecule:telomere length regulation protein tel2;
PDBTitle: tel2 structure and function in the hsp90-dependent maturation of mtor2 and atr complexes
23d2v9va1



not modelled 8.0 53
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
24c2y5sA_



not modelled 8.0 21
PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate.
25c5uz9K_



not modelled 7.8 31
PDB header:immune system/rna
Chain: K: PDB Molecule:anti-crispr protein 30;
PDBTitle: cryo em structure of anti-crisprs, acrf1 and acrf2, bound to type i-f2 crrna-guided crispr surveillance complex
26d1ox0a2



not modelled 7.7 26
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
27d2e74a1



not modelled 7.6 27
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
28c2g7rA_



not modelled 7.5 38
PDB header:hydrolase
Chain: A: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation
PDBTitle: x-ray structure of the death domain of the human mucosa associated2 lymphoid tissue lymphoma translocation protein 1
29c2ht9A_



not modelled 7.5 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin-2;
PDBTitle: the structure of dimeric human glutaredoxin 2
30d3cx5c2



not modelled 7.3 41
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
31d2cfua2



not modelled 7.3 23
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Alkylsulfatase-like
32c2e2kC_



not modelled 7.1 35
PDB header:hydrolase
Chain: C: PDB Molecule:formamidase;
PDBTitle: helicobacter pylori formamidase amif contains a fine-tuned cysteine-2 glutamate-lysine catalytic triad
33c5td7A_



not modelled 7.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:zgc:55652;
PDBTitle: crystal structure of histone deacetylase 10
34c1jbjA_



not modelled 6.9 33
PDB header:immune system
Chain: A: PDB Molecule:cd3 epsilon and gamma ectodomain fragment
PDBTitle: cd3 epsilon and gamma ectodomain fragment complex in single-2 chain construct
35d2zjrn1



not modelled 6.9 25
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
36c3jx9B_



not modelled 6.8 30
PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution
37d1q90b_



not modelled 6.6 27
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
38d1bccc3



not modelled 6.5 41
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
39d1p5dx3



not modelled 6.4 22
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
40c2kubA_



not modelled 6.3 38
PDB header:structural protein
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: solution structure of the alpha subdomain of the major non-repeat unit2 of fap1 fimbriae of streptococcus parasanguis
41d2j01u1



not modelled 6.2 29
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
42c2e1mB_



not modelled 6.1 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:l-glutamate oxidase;
PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6
43c3ebjD_



not modelled 6.0 43
PDB header:transferase
Chain: D: PDB Molecule:polymerase acidic protein;
PDBTitle: crystal structure of an avian influenza virus protein
44c3rguA_



not modelled 5.9 38
PDB header:structural protein
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: structure of fap-nra at ph 5.0
45c4v19U_



not modelled 5.8 25
PDB header:ribosome
Chain: U: PDB Molecule:mitoribosomal protein bl20m, mrpl20;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
46c4e5gB_



not modelled 5.7 43
PDB header:viral protein, transcription
Chain: B: PDB Molecule:polymerase protein pa;
PDBTitle: crystal structure of avian influenza virus pan bound to compound 2
47c3gx1A_



not modelled 5.7 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1832 protein;
PDBTitle: crystal structure of a domain of lin1832 from listeria innocua
48c3fzaA_



not modelled 5.6 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: crystal structure of poplar glutaredoxin s12 in complex with2 glutathione and beta-mercaptoethanol
49c4i2uA_



not modelled 5.6 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: crystal structure of the reduced glutaredoxin from chlorella2 sorokiniana t-89 in complex with glutathione
50d2b8na1



not modelled 5.6 29
Fold:GckA/TtuD-like
Superfamily:GckA/TtuD-like
Family:GckA/TtuD-like
51d1jhba_



not modelled 5.3 30
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
52c2w69B_



not modelled 5.2 43
PDB header:transcription
Chain: B: PDB Molecule:polymerase acidic protein;
PDBTitle: influenza polymerase fragment
53c1x3lA_



not modelled 5.2 33
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ph0495;
PDBTitle: crystal structure of the ph0495 protein from pyrococccus horikoshii2 ot3
54c5oynB_



not modelled 5.2 18
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
55d1uj4a1



not modelled 5.2 30
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain

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