Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0397A_(RVBD0397A)_476397_476645
DateTue Jul 23 14:50:47 BST 2019
Unique Job IDd4892128b3deeb95
SequenceMHALRLVGLA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:12.202 Y:17.396 Z:12.682
Model (left) based on template c1xrzA_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:zinc finger y-chromosomal protein;
PDBTitle: nmr structure of a zinc finger with cyclohexanylalanine2 substituted for the central aromatic residue
Confidence and coverage
Confidence: 20.6% Coverage: 9%
7 residues ( 9% of your sequence) have been modelled with 20.6% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1xrzA_



20.6 86
PDB header:transcription
Chain: A: PDB Molecule:zinc finger y-chromosomal protein;
PDBTitle: nmr structure of a zinc finger with cyclohexanylalanine2 substituted for the central aromatic residue
2d1u34a_



14.1 24
Fold:Hormone receptor domain
Superfamily:Hormone receptor domain
Family:Hormone receptor domain
3c1jy2O_



12.6 63
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of the central region of bovine fibrinogen (e52 fragment) at 1.4 angstroms resolution
4c4rwgC_



11.8 42
PDB header:membrane protein/hormone
Chain: C: PDB Molecule:maltose-binding periplasmic protein, receptor activity-
PDBTitle: crystal structure of the clr:ramp1 extracellular domain heterodimer2 with bound high affinity cgrp analog
5c2lufA_



10.5 75
PDB header:de novo protein
Chain: A: PDB Molecule:retro trp-cage peptide;
PDBTitle: retro trp-cage peptide
6c1ansA_



10.2 75
PDB header:toxin
Chain: A: PDB Molecule:neurotoxin iii;
PDBTitle: three-dimensional structure in solution of neurotoxin iii from the sea2 anemone anemonia sulcata
7c4ylyB_



9.2 43
PDB header:hydrolase
Chain: B: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from a gram-positive2 bacterium, staphylococcus aureus at 2.25 angstrom resolution
8c3v2iA_



8.9 71
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis
9c2kghA_



8.9 60
PDB header:toxin
Chain: A: PDB Molecule:venom peptide 2;
PDBTitle: solution structure of brachyperma ruhnaui toxin 2
10c1pqrA_



8.3 71
PDB header:toxin
Chain: A: PDB Molecule:alpha-a-conotoxin eiva;
PDBTitle: solution conformation of alphaa-conotoxin eiva
11c4dhwA_



7.8 86
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from pseudomonas2 aeruginosa with adipic acid at 2.4 angstrom resolution
12d3b2ua2



7.6 100
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Growth factor receptor domain
Family:Growth factor receptor domain
13d1ryba_



7.3 71
Fold:Phosphorylase/hydrolase-like
Superfamily:Peptidyl-tRNA hydrolase-like
Family:Peptidyl-tRNA hydrolase-like
14d1yy9a4



7.3 71
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Growth factor receptor domain
Family:Growth factor receptor domain
15c4fopA_



7.2 71
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from acinetobacter2 baumannii at 1.86 a resolution
16d1a0ia1



7.1 39
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
17c1wysA_



7.0 31
PDB header:metal binding protein
Chain: A: PDB Molecule:riken cdna 2310008m20 protein;
PDBTitle: solution structure of the first zf-an1 domain of mouse2 riken cdna 2310008m20 protein
18c5x29B_



6.9 80
PDB header:viral protein
Chain: B: PDB Molecule:envelope small membrane protein;
PDBTitle: nmr structure of the sars coronavirus e protein pentameric ion channel
19c5oemA_



6.8 17
PDB header:transcription
Chain: A: PDB Molecule:interferon regulatory factor 9;
PDBTitle: crystal structure of interferon regulatory factor 9 iad domain
20d1pe4a_



6.7 50
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Long-chain scorpion toxins
21d1jzaa_



not modelled 6.6 27
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Long-chain scorpion toxins
22c5zx8A_



not modelled 6.6 71
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from thermus thermophilus
23c4q55B_



not modelled 6.5 71
PDB header:hydrolase
Chain: B: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from a gram-positive2 bacterium, streptococcus pyogenes at 2.19a resolution shows the3 closed structure of the substrate binding cleft
24c5bviB_



not modelled 6.0 29
PDB header:transcription
Chain: B: PDB Molecule:interferon regulatory factor 4;
PDBTitle: x-ray structure of interferon regulatory factor 4 iad domain
25c3n7sB_



not modelled 6.0 38
PDB header:membrane protein
Chain: B: PDB Molecule:calcitonin gene-related peptide type 1 receptor;
PDBTitle: crystal structure of the ectodomain complex of the cgrp receptor, a2 class-b gpcr, reveals the site of drug antagonism
26c4g0rA_



not modelled 5.9 39
PDB header:virus/dna
Chain: A: PDB Molecule:capsid protein vp1;
PDBTitle: structural characterization of h-1 parvovirus: comparison of2 infectious virions to replication defective particles
27c4ersA_



not modelled 5.7 36
PDB header:immune system
Chain: A: PDB Molecule:glucagon receptor;
PDBTitle: a molecular basis for negative regulation of the glucagon receptor
28c2z2jA_



not modelled 5.4 71
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis

Binding site prediction 

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