Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0398c_(-)_476682_477323
DateTue Jul 23 14:50:47 BST 2019
Unique Job IDefb69b694a634ed2
SequenceMGVIARVVGV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.768 Y:34.931 Z:19.957
Model (left) based on template d1w27a_
Top template information
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:HAL/PAL-like
Confidence and coverage
Confidence: 29.5% Coverage: 18%
38 residues ( 18% of your sequence) have been modelled with 29.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1w27a_



29.5 26
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:HAL/PAL-like
2d1s4ea2



26.0 13
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
3d1ut1a_



24.8 33
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Dr-family adhesin
4d2vera1



22.4 26
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Dr-family adhesin
5c3ka5A_



19.8 56
PDB header:chaperone
Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1);
PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a
6c2bcmB_



19.5 33
PDB header:cell adhesion
Chain: B: PDB Molecule:f1845 fimbrial protein;
PDBTitle: daae adhesin
7d1xrua1



18.7 47
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
8c3k2tA_



17.9 56
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo2511 protein;
PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a
9d1piea2



17.6 18
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
10c3nz4A_



16.0 21
PDB header:lyase
Chain: A: PDB Molecule:phenylalanine ammonia-lyase;
PDBTitle: crystal structure of a taxus phenylalanine aminomutase
11d1wuua2



15.4 21
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
12c4babC_



14.8 21
PDB header:lyase
Chain: C: PDB Molecule:phenylalanine aminomutase;
PDBTitle: redesign of a phenylalanine aminomutase into a beta-phenylalanine2 ammonia lyase
13c2o6yF_



14.4 24
PDB header:lyase
Chain: F: PDB Molecule:putative histidine ammonia-lyase;
PDBTitle: tyrosine ammonia-lyase from rhodobacter sphaeroides
14c4k6lC_



13.7 31
PDB header:toxin
Chain: C: PDB Molecule:putative pertussis-like toxin subunit;
PDBTitle: structure of typhoid toxin
15c2qjvB_



13.6 44
PDB header:isomerase
Chain: B: PDB Molecule:uncharacterized iolb-like protein;
PDBTitle: crystal structure of an iolb-like protein (stm4420) from salmonella2 typhimurium lt2 at 1.90 a resolution
16c3lyvF_



12.4 75
PDB header:chaperone
Chain: F: PDB Molecule:ribosome-associated factor y;
PDBTitle: crystal structure of a domain of ribosome-associated factor y from2 streptococcus pyogenes serotype m6. northeast structural genomics3 consortium target id dr64a
17c1yxeA_



12.0 25
PDB header:immune system
Chain: A: PDB Molecule:apical membrane antigen 1;
PDBTitle: structure and inter-domain interactions of domain ii from the blood2 stage malarial protein, apical membrane antigen 1
18c3unvB_



11.7 11
PDB header:lyase
Chain: B: PDB Molecule:admh;
PDBTitle: pantoea agglomerans phenylalanine aminomutase
19c6s7qG_



11.0 18
PDB header:lyase
Chain: G: PDB Molecule:ergothionase;
PDBTitle: crystal structure of ergothioneine degrading enzyme ergothionase from2 treponema denticola in complex with desmethyl-ergothioneine sulfonic3 acid
20c3dwqD_



10.8 30
PDB header:toxin
Chain: D: PDB Molecule:subtilase cytotoxin, subunit b;
PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli with neu5gc-2,3gal-1,3glcnac
21c2qveA_



not modelled 10.7 13
PDB header:transferase
Chain: A: PDB Molecule:tyrosine aminomutase;
PDBTitle: crystal structure of sgtam bound to mechanism based inhibitor
22c4rqoB_



not modelled 10.0 22
PDB header:lyase
Chain: B: PDB Molecule:l-serine dehydratase;
PDBTitle: crystal structure of l-serine dehydratase from legionella pneumophila
23d1gkma_



not modelled 9.9 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:HAL/PAL-like
24c3czoD_



not modelled 9.4 14
PDB header:lyase
Chain: D: PDB Molecule:histidine ammonia-lyase;
PDBTitle: crystal structure of double mutant phenylalanine ammonia-lyase from2 anabaena variabilis
25c5zktA_



not modelled 9.3 41
PDB header:transcription
Chain: A: PDB Molecule:putative transcription factor pcf6;
PDBTitle: crystal structure of tcp domain of pcf6 in oryza sativa
26d1wkta_



not modelled 8.6 43
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Yeast killer toxin
27c5whvF_



not modelled 8.5 31
PDB header:toxin
Chain: F: PDB Molecule:artb protein;
PDBTitle: crystal structure of artb
28c3d0jA_



not modelled 8.2 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ca_c3497;
PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824
29c3rnvA_



not modelled 8.0 32
PDB header:hydrolase
Chain: A: PDB Molecule:helper component proteinase;
PDBTitle: structure of the autocatalytic cysteine protease domain of potyvirus2 helper-component proteinase
30c5zktB_



not modelled 7.9 41
PDB header:transcription
Chain: B: PDB Molecule:putative transcription factor pcf6;
PDBTitle: crystal structure of tcp domain of pcf6 in oryza sativa
31c2n2uA_



not modelled 7.6 23
PDB header:unknown function, structural genomics
Chain: A: PDB Molecule:or358;
PDBTitle: solution nmr structure of de novo designed ferredoxin fold protein2 sfr3, northeast structural genomics consortium (nesg) target or358
32c3zldB_



not modelled 7.5 56
PDB header:membrane protein
Chain: B: PDB Molecule:rhoptry neck protein 2;
PDBTitle: crystal structure of toxoplasma gondii sporozoite ama1 in2 complex with a 36 aa region of sporozoite ron2
33d3cnxa1



not modelled 7.4 50
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
34d2fgga1



not modelled 7.3 26
Fold:dsRBD-like
Superfamily:Rv2632c-like
Family:Rv2632c-like
35c3a9lB_



not modelled 7.2 33
PDB header:hydrolase
Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase;
PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase
36c1rfoC_



not modelled 7.0 60
PDB header:viral protein
Chain: C: PDB Molecule:whisker antigen control protein;
PDBTitle: trimeric foldon of the t4 phagehead fibritin
37c6dk9I_



not modelled 7.0 15
PDB header:lyase
Chain: I: PDB Molecule:dna damage-inducible protein;
PDBTitle: yeast ddi2 cyanamide hydratase
38d1cz5a2



not modelled 6.9 12
Fold:Cdc48 domain 2-like
Superfamily:Cdc48 domain 2-like
Family:Cdc48 domain 2-like
39d1idpa_



not modelled 6.7 50
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
40c5onkA_



not modelled 6.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:yndl;
PDBTitle: native yndl
41d2rgqa1



not modelled 6.4 38
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
42d2dsta1



not modelled 6.2 28
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:TTHA1544-like
43c5vfbB_



not modelled 6.0 31
PDB header:transferase
Chain: B: PDB Molecule:malate synthase g;
PDBTitle: 1.36 angstrom resolution crystal structure of malate synthase g from2 pseudomonas aeruginosa in complex with glycolic acid.
44c4wpyA_



not modelled 5.6 19
PDB header:de novo protein
Chain: A: PDB Molecule:protein dl-rv1738;
PDBTitle: racemic crystal structure of rv1738 from mycobacterium tuberculosis2 (form-ii)
45c5x3lA_



not modelled 5.6 54
PDB header:antimicrobial protein
Chain: A: PDB Molecule:pilosulin-1;
PDBTitle: solution structure of a novel antimicrobial peptide, p1, from jumper2 ant myrmecia pilosula
46c1sseA_



not modelled 5.3 56
PDB header:transcription activator
Chain: A: PDB Molecule:ap-1 like transcription factor yap1;
PDBTitle: solution structure of the oxidized form of the yap1 redox2 domain
47c2lnbA_



not modelled 5.3 40
PDB header:immune system
Chain: A: PDB Molecule:z-dna-binding protein 1;
PDBTitle: solution nmr structure of n-terminal domain (6-74) of human zbp12 protein, northeast structural genomics consortium target hr8174a.
48c1htlC_



not modelled 5.2 30
PDB header:enterotoxin
Chain: C: PDB Molecule:heat-labile enterotoxin, subunit a;
PDBTitle: mutation of a buried residue causes lack of activity but no2 conformational change: crystal structure of e. coli heat-3 labile enterotoxin mutant val 97--> lys
49c5yysC_



not modelled 5.2 17
PDB header:transferase
Chain: C: PDB Molecule:l-fucokinase, l-fucose-1-p guanylyltransferase;
PDBTitle: cryo-em structure of l-fucokinase, gdp-fucose pyrophosphorylase (fkp)2 in bacteroides fragilis

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