Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0401_(-)_479792_480163
DateTue Jul 23 14:50:47 BST 2019
Unique Job ID44da144ee4cba295
SequenceMRPRRALAGL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.433 Y:18.441 Z:23.720
Model (left) based on template c1iijA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
Confidence and coverage
Confidence: 11.5% Coverage: 24%
30 residues ( 24% of your sequence) have been modelled with 11.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1iijA_



11.5 13
PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
2c2lowA_



10.3 28
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
3d1n93x_



9.4 36
Fold:P40 nucleoprotein
Superfamily:P40 nucleoprotein
Family:P40 nucleoprotein
4c1n93X_



9.4 36
PDB header:viral protein
Chain: X: PDB Molecule:p40 nucleoprotein;
PDBTitle: crystal structure of the borna disease virus nucleoprotein
5c2lx0A_



7.9 33
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
6c5tfyJ_



7.4 54
PDB header:cell adhesion
Chain: J: PDB Molecule:flagellin;
PDBTitle: the archaeal flagellum of methanospirillum hungatei strain jf1.
7d1g5ta_



6.8 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
8c5tp6B_



6.7 67
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: solution structure of the cam34 with the inos cam binding domain2 peptide
9d1ldda_



6.5 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:SCF ubiquitin ligase complex WHB domain
10d1yt3a2



6.2 57
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
11d1g64b_



6.2 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
12c6b2zS_



5.9 21
PDB header:membrane protein
Chain: S: PDB Molecule:atp synthase subunit j, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
13c6b2zi_



5.9 21
PDB header:membrane protein
Chain: I: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
14c5o4uK_



5.6 46
PDB header:cell adhesion
Chain: K: PDB Molecule:flagellin;
PDBTitle: the flagellin of pyrococcus furiosus
15c3n1hA_



5.6 20
PDB header:dna binding protein
Chain: A: PDB Molecule:stwhy2;
PDBTitle: crystal structure of stwhy2
16c5z1lL_



5.4 38
PDB header:protein fibril
Chain: L: PDB Molecule:flagellin;
PDBTitle: cryo-em structure of methanoccus maripaludis archaellum
17c5j6vA_



5.2 21
PDB header:antimicrobial protein
Chain: A: PDB Molecule:hylin-d;
PDBTitle: nmr structures of hylin-a1 analogs: hylin-d
18c4ogqF_



5.2 25
PDB header:electron transport
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
19c4h44F_



5.2 25
PDB header:photosynthesis
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: 2.70 a cytochrome b6f complex structure from nostoc pcc 7120

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below