Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0403c_(mmpS1)_483231_483659
DateTue Jul 23 14:50:47 BST 2019
Unique Job IDd359f172d41b0bc2
SequenceMFGVAKRFWI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.807 Y:50.966 Z:30.832
Model (left) based on template c2lw3A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 63%
89 residues ( 63% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lw3A_
100.0 53
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
2d1fv1b1
50.6 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
3d1dmla1
37.5 19
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
4d1muja1
35.0 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
5d1zs8a1
33.9 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
6d1d5mb1
29.0 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
7d1uvqb1
28.4 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
8c3osvC_
26.2 7
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
9d1qqda1
26.1 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
10d1c16a1
25.3 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
11d1fngb1
25.2 7
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
12c5lnkm_
21.8 32
PDB header:oxidoreductase
Chain: M: PDB Molecule:mitochondrial complex i, nd4 subunit;
PDBTitle: entire ovine respiratory complex i
13d1uvqa1
20.1 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
14d1klub1
20.0 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
15d1mhca1
19.8 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
16d1es0b1
19.3 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
17c1dmlG_
19.1 19
PDB header:dna binding protein/transferase
Chain: G: PDB Molecule:dna polymerase processivity factor;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
18c2kvzA_
18.7 41
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ispe;
PDBTitle: structure of residues 161-235 of putative peptidoglycan binding2 protein lmo0835 from listeria monocytogenes: target lmr64b of the3 northeast structural genomics consortium
19d1hx0a1
18.1 19
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
20d1l3ga_
17.9 14
Fold:DNA-binding domain of Mlu1-box binding protein MBP1
Superfamily:DNA-binding domain of Mlu1-box binding protein MBP1
Family:DNA-binding domain of Mlu1-box binding protein MBP1
21c2xkuA_
not modelled 17.1 14
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: prion-like conversion during amyloid formation at atomic resolution
22d3d85d2
not modelled 17.0 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
23c4ux5B_
not modelled 17.0 17
PDB header:transcription
Chain: B: PDB Molecule:transcription factor mbp1;
PDBTitle: structure of dna complex of pcg2
24d1k8ib1
not modelled 16.5 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
25d3dhpa1
not modelled 16.4 19
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
26d1kska3
not modelled 16.2 36
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
27d1neza1
not modelled 15.8 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
28c1ywkE_
not modelled 13.5 17
PDB header:isomerase
Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol-
PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis
29d1iaka1
not modelled 13.5 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
30d1r3ha1
not modelled 13.1 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
31d1jk8a1
not modelled 13.0 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
32d1es0a1
not modelled 13.0 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
33c5lc5b_
not modelled 12.8 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class2
34d1kona_
not modelled 12.7 35
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
35c5o31b_
not modelled 12.6 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: mitochondrial complex i in the deactive state
36d1k8da1
not modelled 12.5 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
37d1a3xa1
not modelled 12.5 15
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
38d1lk2a1
not modelled 12.4 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
39c5e09A_
not modelled 12.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structural insight of a trimodular halophilic cellulase with a family2 46 carbohydrate-binding module
40c2kncA_
not modelled 11.9 21
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
41d2iada1
not modelled 11.9 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
42d1kjva1
not modelled 11.6 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
43d1ywka1
not modelled 11.5 13
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
44d1x6oa2
not modelled 11.1 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
45c2amnA_
not modelled 11.0 57
PDB header:antimicrobial protein
Chain: A: PDB Molecule:cathelicidin;
PDBTitle: solution structure of fowlicidin-1, a novel cathelicidin2 antimicrobial peptide from chicken
46c5ldxb_
not modelled 10.7 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class3.
47c5ldwb_
not modelled 10.7 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class1
48c2na6A_
not modelled 10.3 16
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
49c2na6C_
not modelled 10.3 16
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
50c2na6B_
not modelled 10.3 16
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
51c5ee2A_
not modelled 10.2 38
PDB header:metal transport
Chain: A: PDB Molecule:hemoglobin-haptoglobin-utilization protein;
PDBTitle: the crystal structure of the c-terminal beta-barrel of hpua from2 neisseria gonorrhoeae
52d1k5na1
not modelled 10.2 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
53c1q40C_
not modelled 9.9 33
PDB header:translation
Chain: C: PDB Molecule:mrna transport regulator mtr2;
PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex
54c5t9gD_
not modelled 9.8 17
PDB header:hydrolase
Chain: D: PDB Molecule:glycoside hydrolase;
PDBTitle: crystal structure of bugh2cwt in complex with galactoisofagomine
55c4f3qA_
not modelled 9.2 28
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein cbu_1566;
PDBTitle: structure of a yebc family protein (cbu_1566) from coxiella burnetii
56d2fa8a1
not modelled 9.2 32
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Selenoprotein W-related
57d1s9va1
not modelled 9.2 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
58d1xtda2
not modelled 9.0 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
59c2jp3A_
not modelled 9.0 10
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
60d1xrua1
not modelled 9.0 38
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
61d1jaea1
not modelled 8.9 24
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
62d1dgja2
not modelled 8.8 10
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
63c2obkE_
not modelled 8.7 32
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain;
PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6.
64c6ansD_
not modelled 8.6 41
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 burkholderia cenocepacia
65d1mw7a_
not modelled 8.6 13
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
66c5aeoA_
not modelled 8.5 21
PDB header:immune system
Chain: A: PDB Molecule:r. equi vapg protein;
PDBTitle: virulence-associated protein vapg from the intracellular2 pathogen rhodococcus equi
67c2kppA_
not modelled 8.3 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0431 protein;
PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
68d1vlba2
not modelled 8.2 10
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
69c2pncB_
not modelled 7.9 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase, liver isozyme;
PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine
70d1liua1
not modelled 7.9 18
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
71c2lxfA_
not modelled 7.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a potential acylphosphatase from giardia2 lamblia, seattle structural genomics center for infectious disease3 target gilaa.01396.a
72d1of5b_
not modelled 7.7 33
Fold:Cystatin-like
Superfamily:NTF2-like
Family:NTF2-like
73d1eg3a3
not modelled 7.7 19
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
74d1wbxa1
not modelled 7.5 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
75d1pkla1
not modelled 7.5 23
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
76c2yxyA_
not modelled 7.5 37
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical conserved protein, gk0453;
PDBTitle: crystarl structure of hypothetical conserved protein, gk0453
77d1g94a1
not modelled 7.1 18
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
78d1dn0b2
not modelled 7.0 6
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
79c3owrA_
not modelled 7.0 8
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized hypothetical protein;
PDBTitle: crystal structure of a putative secreted protein (bf4250) from2 bacteroides fragilis nctc 9343 at 1.81 a resolution
80d1vgka1
not modelled 7.0 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
81c3rolA_
not modelled 6.9 15
PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: murine class i major histocompatibility complex h-2kb in complex with2 post-translationally modified lcmv-derived gp34-41 peptide,3 comprising a nitrotyrosine at position 3
82d1lfpa_
not modelled 6.8 16
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
83d1fnga1
not modelled 6.7 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
84d1klua1
not modelled 6.6 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
85d3bzfa1
not modelled 6.6 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
86d1ok0a_
not modelled 6.6 16
Fold:alpha-Amylase inhibitor tendamistat
Superfamily:alpha-Amylase inhibitor tendamistat
Family:alpha-Amylase inhibitor tendamistat
87d1rm6c2
not modelled 6.4 30
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
88c4gdzA_
not modelled 6.4 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4251 family protein (bacegg_02002) from2 bacteroides eggerthii dsm 20697 at 1.95 a resolution
89c6b6lB_
not modelled 6.4 11
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, sugar binding domain protein;
PDBTitle: the crystal structure of glycosyl hydrolase family 2 (gh2) member from2 bacteroides cellulosilyticus dsm 14838
90c2p0gB_
not modelled 6.4 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:selenoprotein w-related protein;
PDBTitle: crystal structure of selenoprotein w-related protein from vibrio2 cholerae. northeast structural genomics target vcr75
91c4kw3A_
not modelled 6.3 18
PDB header:viral protein
Chain: A: PDB Molecule:ns1;
PDBTitle: crystal structure of the non-structural protein 1 n-terminal origin-2 recognition/nickase domain from the emerging human bocavirus
92d2rb6a1
not modelled 6.3 22
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
93c4gu8G_
not modelled 6.2 22
PDB header:sugar binding protein
Chain: G: PDB Molecule:burkholderia oklahomensis agglutinin (boa);
PDBTitle: crystal structure of burkholderia oklahomensis agglutinin (boa)
94c2kt7A_
not modelled 6.2 25
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:putative peptidoglycan bound protein (lpxtg
PDBTitle: solution nmr structure of mucin-binding domain of protein2 lmo0835 from listeria monocytogenes, northeast structural3 genomics consortium target lmr64a
95d1u8ib2
not modelled 5.9 6
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
96d1n62a2
not modelled 5.8 10
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
97d1t3qa2
not modelled 5.8 20
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
98c2kerA_
not modelled 5.7 23
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685;
PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus
99d2cs4a1
not modelled 5.7 30
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below