Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0407_(fgd1)_490786_491796
DateTue Jul 23 14:50:48 BST 2019
Unique Job ID6b1bf6178e7ac344
SequenceVAELKLGYKA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.658 Y:58.812 Z:48.852
Model (left) based on template c3c8nB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase
PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 99%
332 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c8nB_



100.0 97
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase
PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis
2d1rhca_



100.0 34
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
3d1ezwa_



100.0 24
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
4d1luca_



100.0 18
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
5c1tvlA_



100.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein ytnj;
PDBTitle: structure of ytnj from bacillus subtilis
6d1tvla_



100.0 16
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
7c5tlcA_



100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:dibenzothiophene desulfurization enzyme a;
PDBTitle: crystal structure of bdsa from bacillus subtilis wu-s2b
8c3sdoB_



100.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase;
PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei
9c1z69D_



100.0 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)-
PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420
10c3raoB_



100.0 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987.
11c5wanA_



100.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrimidine monooxygenase ruta;
PDBTitle: crystal structure of a flavoenzyme ruta in the pyrimidine catabolic2 pathway
12c5w4zA_



100.0 20
PDB header:flavoprotein
Chain: A: PDB Molecule:riboflavin lyase;
PDBTitle: crystal structure of riboflavin lyase (rcae) with modified fmn and2 substrate riboflavin
13d1lucb_



100.0 13
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
14c2i7gA_



100.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:monooxygenase;
PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens
15c3b9nB_



100.0 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkane monoxygenase;
PDBTitle: crystal structure of long-chain alkane monooxygenase (lada)
16c5dqpA_



100.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:edta monooxygenase;
PDBTitle: edta monooxygenase (emoa) from chelativorans sp. bnc1
17c2wgkA_



100.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase;
PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida
18d1f07a_



100.0 24
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
19d1nqka_



100.0 19
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
20c6friD_



100.0 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:alkanal monooxygenase beta chain;
PDBTitle: structure of luxb from photobacterium leiognathi
21c6ak1B_



not modelled 100.0 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:dimethyl-sulfide monooxygenase;
PDBTitle: crystal structure of dmoa from hyphomicrobium sulfonivorans
22c2b81D_



not modelled 100.0 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus
23d1nfpa_



not modelled 100.0 14
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
24d1fvpa_



not modelled 99.5 9
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
25d1jpdx1



not modelled 75.6 12
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
26c5zmyF_



not modelled 74.9 22
PDB header:hydrolase
Chain: F: PDB Molecule:cis-epoxysuccinate hydrolase;
PDBTitle: crystal structure of a cis-epoxysuccinate hydrolase producing d(-)-2 tartaric acids
27c3qy6A_



not modelled 74.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe;
PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases
28c4nncA_



not modelled 65.9 17
PDB header:lyase
Chain: A: PDB Molecule:obca, oxalate biosynthetic component a;
PDBTitle: ternary complex of obca with c4-coa adduct and oxalate
29c2uvaI_



not modelled 65.1 19
PDB header:transferase
Chain: I: PDB Molecule:fatty acid synthase beta subunits;
PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400
30c2x7vA_



not modelled 64.5 10
PDB header:hydrolase
Chain: A: PDB Molecule:probable endonuclease 4;
PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc
31d1jpma1



not modelled 63.5 18
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
32c4b3yB_



not modelled 62.4 25
PDB header:transferase
Chain: B: PDB Molecule:fatty acid synthase;
PDBTitle: cryo-em structure of the mycobacterial fatty acid synthase
33c3b8iF_



not modelled 61.1 17
PDB header:lyase
Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase;
PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
34c3chvA_



not modelled 57.1 17
PDB header:metal binding protein
Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim
PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution
35c3fa4D_



not modelled 56.4 18
PDB header:lyase
Chain: D: PDB Molecule:2,3-dimethylmalate lyase;
PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form
36d2d69a1



not modelled 53.1 9
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
37c3no5C_



not modelled 52.7 15
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf849 domain containing protein2 (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution
38c2vkzH_



not modelled 52.6 15
PDB header:transferase
Chain: H: PDB Molecule:fatty acid synthase subunit beta;
PDBTitle: structure of the cerulenin-inhibited fungal fatty acid synthase type i2 multienzyme complex
39d1muma_



not modelled 52.5 22
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
40c3eooL_



not modelled 52.2 19
PDB header:lyase
Chain: L: PDB Molecule:methylisocitrate lyase;
PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
41c3wqoB_



not modelled 52.2 19
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein mj1311;
PDBTitle: crystal structure of d-tagatose 3-epimerase-like protein
42c1zlpA_



not modelled 51.5 11
PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
43d1ujqa_



not modelled 50.9 19
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
44c3e02A_



not modelled 50.3 24
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf849;
PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution
45c2ze3A_



not modelled 48.8 19
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
46c3lyeA_



not modelled 47.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
47c2qiwA_



not modelled 47.5 11
PDB header:transferase
Chain: A: PDB Molecule:pep phosphonomutase;
PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
48c3c6cA_



not modelled 45.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution
49c2wjeA_



not modelled 44.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb;
PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4.
50d2dfaa1



not modelled 44.0 19
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
51d1tzza1



not modelled 43.7 10
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
52c5ud6B_



not modelled 43.5 13
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dhdps from cyanidioschyzon merolae with lysine2 bound
53c2y7eA_



not modelled 42.7 15
PDB header:lyase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form)
54c3ih1A_



not modelled 41.0 26
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
55d1geha1



not modelled 40.5 19
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
56c2d69B_



not modelled 40.1 9
PDB header:lyase
Chain: B: PDB Molecule:ribulose bisphosphate carboxylase;
PDBTitle: crystal structure of the complex of sulfate ion and octameric2 ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from3 pyrococcus horikoshii ot3 (form-2 crystal)
57d1s2wa_



not modelled 39.8 23
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
58c4mwaA_



not modelled 37.9 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: 1.85 angstrom crystal structure of gcpe protein from bacillus2 anthracis
59c1rldB_



not modelled 37.8 12
PDB header:lyase(carbon-carbon)
Chain: B: PDB Molecule:ribulose 1,5 bisphosphate carboxylase/oxygenase (large
PDBTitle: solid-state phase transition in the crystal structure of ribulose 1,5-2 biphosphate carboxylase(slash)oxygenase
60c6hunA_



not modelled 36.4 9
PDB header:photosynthesis
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase;
PDBTitle: dimeric archeal rubisco from hyperthermus butylicus
61c6daoB_



not modelled 36.4 9
PDB header:lyase
Chain: B: PDB Molecule:trans-o-hydroxybenzylidenepyruvate hydratase-aldolase;
PDBTitle: nahe wt selenomethionine
62c3umuA_



not modelled 34.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:histidinol-phosphatase;
PDBTitle: crystal structure of l-histidinol phosphate phosphatase (hisk) from2 lactococcus lactis subsp. lactis il1403 complexed with zn, phosphate3 and l-histidinol
63c2r8wB_



not modelled 33.9 16
PDB header:lyase
Chain: B: PDB Molecule:agr_c_1641p;
PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58
64c4rtbA_



not modelled 33.7 13
PDB header:lyase
Chain: A: PDB Molecule:hydg protein;
PDBTitle: x-ray structure of the fefe-hydrogenase maturase hydg from2 carboxydothermus hydrogenoformans
65c4qccA_



not modelled 33.7 18
PDB header:structural protein, lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase, peptidyl-
PDBTitle: structure of a cube-shaped, highly porous protein cage designed by2 fusing symmetric oligomeric domains
66c4mg4G_



not modelled 33.5 17
PDB header:unknown function
Chain: G: PDB Molecule:phosphonomutase;
PDBTitle: crystal structure of a putative phosphonomutase from burkholderia2 cenocepacia j2315
67c4lsbA_



not modelled 31.9 21
PDB header:lyase
Chain: A: PDB Molecule:lyase/mutase;
PDBTitle: crystal structure of a putative lyase/mutase from burkholderia2 cenocepacia j2315
68c1r30A_



not modelled 31.7 8
PDB header:transferase
Chain: A: PDB Molecule:biotin synthase;
PDBTitle: the crystal structure of biotin synthase, an s-adenosylmethionine-2 dependent radical enzyme
69d1r30a_



not modelled 31.7 8
Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Biotin synthase
70c1rcxH_



not modelled 30.4 12
PDB header:lyase (carbon-carbon)
Chain: H: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase;
PDBTitle: non-activated spinach rubisco in complex with its substrate2 ribulose-1,5-bisphosphate
71d1o5ka_



not modelled 30.3 17
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
72c1gehE_



not modelled 30.2 19
PDB header:lyase
Chain: E: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase;
PDBTitle: crystal structure of archaeal rubisco (ribulose 1,5-bisphosphate2 carboxylase/oxygenase)
73c3lotC_



not modelled 29.1 20
PDB header:structure genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution
74c6daqA_



not modelled 28.0 15
PDB header:lyase
Chain: A: PDB Molecule:phdj;
PDBTitle: phdj bound to substrate intermediate
75c5k9xA_



not modelled 27.9 19
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha chain from legionella2 pneumophila subsp. pneumophila
76d8ruca1



not modelled 27.0 10
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
77c4wd0A_



not modelled 26.1 21
PDB header:isomerase
Chain: A: PDB Molecule:1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)
PDBTitle: crystal structure of hisap form arthrobacter aurescens
78c5kinC_



not modelled 25.8 24
PDB header:lyase
Chain: C: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha beta complex from2 streptococcus pneumoniae
79d1ykwa1



not modelled 25.2 31
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
80c3noyA_



not modelled 24.8 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
81c3pueA_



not modelled 24.5 19
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution
82c1bf2A_



not modelled 23.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase
83c2v82A_



not modelled 23.3 18
PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase;
PDBTitle: kdpgal complexed to kdpgal
84d1wdda1



not modelled 23.3 12
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
85c3d0cB_



not modelled 23.0 14
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from oceanobacillus2 iheyensis at 1.9 a resolution
86c1zfjA_



not modelled 22.7 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
87c3e49A_



not modelled 22.6 22
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold;
PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution
88d2a6na1



not modelled 22.3 11
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
89c3qfeB_



not modelled 22.1 14
PDB header:lyase
Chain: B: PDB Molecule:putative dihydrodipicolinate synthase family protein;
PDBTitle: crystal structures of a putative dihydrodipicolinate synthase family2 protein from coccidioides immitis
90c6mywA_



not modelled 22.0 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:n-ethylmaleimide reductase;
PDBTitle: gluconobacter ene-reductase (gluer) mutant - t36a
91d1xxxa1



not modelled 22.0 15
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
92d1xcfa_



not modelled 21.9 11
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
93c3lerA_



not modelled 21.7 19
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from campylobacter2 jejuni subsp. jejuni nctc 11168
94c4a3uB_



not modelled 21.4 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh\:flavin oxidoreductase/nadh oxidase;
PDBTitle: x-structure of the old yellow enzyme homologue from zymomonas mobilis2 (ncr)
95d1ht6a2



not modelled 21.4 19
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
96d1f74a_



not modelled 20.9 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
97d1x7fa2



not modelled 20.8 24
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Outer surface protein, N-terminal domain
98c4qnwA_



not modelled 20.7 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:chanoclavine-i aldehyde reductase;
PDBTitle: crystal structure of easa, an old yellow enzyme from aspergillus2 fumigatus
99c2p0oA_



not modelled 20.5 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf871;
PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function
100d1wa3a1



not modelled 20.5 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase

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